Wall clock time and date at job start Sun Mar 29 2020 21:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.21594 * 34.99893 * 11 10 9 13 13 C 1.52823 * 109.22170 * 275.61209 * 11 10 9 14 14 C 1.53738 * 109.89705 * 301.13074 * 13 11 10 15 15 N 1.47388 * 106.64548 * 307.19453 * 14 13 11 16 16 C 1.33682 * 127.75656 * 235.01141 * 15 14 13 17 17 O 1.21280 * 125.39480 * 340.64269 * 16 15 14 18 18 C 1.51506 * 109.21646 * 160.62376 * 16 15 14 19 19 C 1.54553 * 104.01276 * 25.11840 * 18 16 15 20 20 C 1.47715 * 121.15029 * 54.09520 * 15 14 13 21 21 H 1.08996 * 110.30646 * 65.08840 * 20 15 14 22 22 C 1.52954 * 107.18446 * 304.36948 * 20 15 14 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.00899 * 111.00283 * 303.95218 * 10 9 7 27 27 H 1.09000 * 109.40211 * 61.26153 * 13 11 10 28 28 H 1.09003 * 109.40427 * 181.00258 * 13 11 10 29 29 H 1.09000 * 110.01249 * 66.47586 * 14 13 11 30 30 H 1.09001 * 110.01793 * 187.81282 * 14 13 11 31 31 H 1.08992 * 110.52020 * 143.75252 * 18 16 15 32 32 H 1.09001 * 110.51581 * 266.35197 * 18 16 15 33 33 H 1.08999 * 110.70044 * 97.41353 * 19 18 16 34 34 H 1.08999 * 110.70624 * 220.64953 * 19 18 16 35 35 H 1.09002 * 109.64135 * 294.92276 * 22 20 15 36 36 H 1.09000 * 109.56696 * 174.38379 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5928 -4.8207 -0.5889 13 6 1.1417 -5.2817 1.4375 14 6 2.4152 -5.3651 2.2947 15 7 3.3393 -6.2723 1.5907 16 6 3.9293 -7.3724 2.0690 17 8 4.0726 -7.6384 3.2436 18 6 4.3901 -8.2345 0.9115 19 6 4.5743 -7.2328 -0.2510 20 6 3.7108 -6.0406 0.1799 21 1 4.2739 -5.1123 0.0846 22 6 2.4114 -5.9728 -0.6242 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8404 -3.5487 -0.7808 27 1 0.4756 -4.5248 1.8516 28 1 0.6376 -6.2481 1.4432 29 1 2.8647 -4.3769 2.3922 30 1 2.1762 -5.7648 3.2802 31 1 5.3357 -8.7210 1.1502 32 1 3.6317 -8.9768 0.6625 33 1 5.6196 -6.9381 -0.3436 34 1 4.2078 -7.6561 -1.1862 35 1 1.9118 -6.9412 -0.5954 36 1 2.6347 -5.7036 -1.6566 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172146984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:29 Heat of formation + Delta-G solvation = -59.780750 kcal Electronic energy + Delta-G solvation = -17470.723902 eV Core-core repulsion = 14760.221835 eV Total energy + Delta-G solvation = -2710.502067 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74464 -38.92187 -36.89909 -35.08556 -34.01995 -32.09794 -30.25776 -28.44958 -26.88505 -24.52276 -23.77173 -22.40697 -21.36393 -19.75601 -18.54008 -17.42244 -16.98988 -16.71758 -16.53786 -16.30020 -15.49932 -15.13190 -14.84871 -14.64530 -14.20630 -13.99099 -13.69023 -13.43749 -13.30155 -13.04774 -12.84415 -12.61713 -12.44069 -12.20076 -11.98743 -11.76782 -11.66938 -11.40972 -11.13690 -10.74693 -10.65650 -9.62641 -9.00977 -8.21833 -6.31840 1.40580 1.42060 1.54820 1.57290 2.14414 2.40111 3.12394 3.43841 3.55795 3.64379 3.96508 3.99340 4.05249 4.18791 4.27015 4.45783 4.53183 4.67183 4.72613 4.88804 4.91344 4.94778 5.04636 5.08801 5.15138 5.19069 5.20631 5.29300 5.42755 5.64055 5.66048 6.05728 6.36355 6.49731 6.77477 6.94667 7.20654 7.39489 8.89741 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038932 B = 0.005522 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.029474 B = 5069.213254 C = 5078.269232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.064 0.936 9 C 0.212 3.788 10 N -0.677 5.677 11 C 0.079 3.921 12 H 0.027 0.973 13 C -0.112 4.112 14 C 0.144 3.856 15 N -0.613 5.613 16 C 0.504 3.496 17 O -0.595 6.595 18 C -0.142 4.142 19 C -0.114 4.114 20 C 0.130 3.870 21 H 0.081 0.919 22 C -0.115 4.115 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.041 1.041 26 H 0.337 0.663 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 -15.252 -4.309 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.308 5.308 11 C -0.031 4.031 12 H 0.045 0.955 13 C -0.151 4.151 14 C 0.022 3.978 15 N -0.346 5.346 16 C 0.294 3.706 17 O -0.477 6.477 18 C -0.182 4.182 19 C -0.152 4.152 20 C 0.027 3.973 21 H 0.099 0.901 22 C -0.153 4.153 23 H 0.072 0.928 24 H 0.016 0.984 25 H -0.023 1.023 26 H 0.155 0.845 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.278 -15.215 -2.968 17.125 hybrid contribution -0.668 1.400 -0.458 1.617 sum 6.610 -13.815 -3.425 15.693 Atomic orbital electron populations 1.70092 1.07766 1.27772 1.51909 1.25899 0.95691 1.03238 0.94834 0.85346 0.79020 0.78708 0.77574 1.18657 1.20372 1.20823 1.21582 0.93763 0.91485 1.49935 0.91771 1.19186 0.90569 0.88855 0.92972 1.60588 1.20132 1.00950 1.49178 1.21529 0.95923 0.90356 0.95290 0.95542 1.21829 0.96568 1.00914 0.95760 1.21420 0.88981 0.93034 0.94321 1.48749 1.45504 1.25990 1.14340 1.21652 0.76645 0.82356 0.89955 1.90660 1.59399 1.76669 1.20997 1.22410 1.04981 0.98164 0.92597 1.22413 1.01012 0.92778 0.98978 1.21875 0.95814 1.00222 0.79345 0.90105 1.22105 0.94920 0.98843 0.99443 0.92770 0.98378 1.02338 0.84515 0.92953 0.90602 0.91903 0.91320 0.87204 0.85982 0.88606 0.86257 0.89207 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.53 -29.26 9.32 25.60 0.24 -29.02 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.42 16 9 C 0.21 10.84 5.23 85.56 0.45 11.28 16 10 N -0.68 -26.18 4.95 -495.45 -2.45 -28.64 16 11 C 0.08 2.48 2.77 44.94 0.12 2.60 16 12 H 0.03 0.91 7.78 -2.39 -0.02 0.89 16 13 C -0.11 -3.52 5.65 30.78 0.17 -3.34 16 14 C 0.14 4.68 6.66 86.46 0.58 5.26 16 15 N -0.61 -17.17 2.94 -791.15 -2.32 -19.49 16 16 C 0.50 14.41 8.01 88.08 0.71 15.12 16 17 O -0.60 -22.64 17.86 -3.03 -0.05 -22.69 16 18 C -0.14 -2.32 6.92 30.63 0.21 -2.10 16 19 C -0.11 -1.49 6.71 31.25 0.21 -1.28 16 20 C 0.13 2.80 3.26 44.87 0.15 2.94 16 21 H 0.08 1.98 7.55 -2.39 -0.02 1.96 16 22 C -0.11 -2.42 4.72 30.66 0.14 -2.27 16 23 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 24 H 0.00 -0.11 7.39 -2.39 -0.02 -0.12 16 25 H -0.04 -2.27 8.05 -2.39 -0.02 -2.29 16 26 H 0.34 12.08 8.05 -89.69 -0.72 11.36 16 27 H 0.05 1.89 7.42 -2.39 -0.02 1.87 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 2.34 7.84 -2.39 -0.02 2.32 16 30 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.12 0.90 7.81 -2.39 -0.02 0.88 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -70.34 289.50 1.26 -69.08 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.34 Total: 11.79 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 3.44 Total: -0.28 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -4.49 Total: -103.74 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.69 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.34 1.26 -69.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172146984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.296 kcal (2) G-P(sol) polarization free energy of solvation -70.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds