Wall clock time and date at job start Sun Mar 29 2020 22:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35447 * 126.77365 * 2 1 4 4 C 1.41382 * 103.98541 * 180.09962 * 3 2 1 5 5 C 1.50697 * 126.80476 * 179.89175 * 4 3 2 6 6 N 1.46894 * 109.47302 * 94.70893 * 5 4 3 7 7 C 1.46898 * 111.00329 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47037 * 34.99852 * 7 6 5 9 9 C 1.53007 * 109.47244 * 275.00457 * 7 6 5 10 10 C 1.52996 * 109.47542 * 155.00109 * 7 6 5 11 11 C 1.52997 * 109.46947 * 294.99983 * 10 7 6 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 7 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00200 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00139 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47145 * 89.99836 * 16 14 12 18 18 H 1.48496 * 109.47547 * 210.00333 * 16 14 12 19 19 H 1.48499 * 109.47030 * 330.00237 * 16 14 12 20 20 N 1.30180 * 106.39253 * 359.62765 * 4 3 2 21 21 O 1.20917 * 111.60698 * 0.23870 * 20 4 3 22 22 H 1.09001 * 109.47145 * 180.30014 * 1 2 3 23 23 H 1.08995 * 109.46870 * 300.29400 * 1 2 3 24 24 H 1.08992 * 109.47195 * 60.29784 * 1 2 3 25 25 H 1.07996 * 128.01145 * 359.96661 * 3 2 1 26 26 H 1.08997 * 109.46970 * 334.70696 * 5 4 3 27 27 H 1.09002 * 109.46929 * 214.71013 * 5 4 3 28 28 H 1.00900 * 111.00548 * 303.95525 * 6 5 4 29 29 H 1.08998 * 109.47395 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.46609 * 299.99657 * 9 7 6 31 31 H 1.08992 * 109.47067 * 59.99139 * 9 7 6 32 32 H 1.09001 * 109.47372 * 175.00293 * 10 7 6 33 33 H 1.09004 * 109.47108 * 55.00037 * 10 7 6 34 34 H 1.09001 * 109.46832 * 59.99979 * 11 10 7 35 35 H 1.09000 * 109.47611 * 300.00276 * 11 10 7 36 36 H 0.96999 * 120.00061 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9210 1.3001 -0.0057 6 7 5.4038 1.4508 1.3734 7 6 6.6717 2.1919 1.4094 8 1 6.6704 2.9522 0.6283 9 6 7.8345 1.2247 1.1776 10 6 6.8314 2.8636 2.7747 11 6 5.7398 3.9204 2.9539 12 6 5.8967 4.5817 4.2990 13 1 6.6954 4.2786 4.9597 14 6 5.0205 5.5733 4.6861 15 7 5.1577 6.1507 5.8597 16 14 3.6394 6.0979 3.5430 17 1 2.4344 5.2726 3.8113 18 1 3.3208 7.5295 3.7758 19 1 4.0650 5.9085 2.1329 20 7 3.4764 -0.7563 0.0046 21 8 2.3096 -1.0736 0.0060 22 1 -0.3633 -1.0277 0.0054 23 1 -0.3633 0.5184 0.8873 24 1 -0.3633 0.5092 -0.8926 25 1 2.0345 2.1270 -0.0005 26 1 4.7632 2.2850 -0.4451 27 1 5.6607 0.7549 -0.5921 28 1 4.7086 1.8962 1.9534 29 1 8.7753 1.7745 1.2047 30 1 7.8358 0.4644 1.9587 31 1 7.7207 0.7462 0.2050 32 1 7.8105 3.3390 2.8334 33 1 6.7439 2.1137 3.5610 34 1 4.7607 3.4449 2.8952 35 1 5.8272 4.6702 2.1676 36 1 4.5416 6.8487 6.1319 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:15 Heat of formation + Delta-G solvation = 42.743823 kcal Electronic energy + Delta-G solvation = -16692.696157 eV Core-core repulsion = 13986.639889 eV Total energy + Delta-G solvation = -2706.056268 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.90318 -37.55830 -34.67446 -33.54502 -32.90934 -31.16075 -29.54172 -27.89040 -26.10898 -24.90688 -22.94858 -21.13882 -20.16139 -19.61172 -17.61676 -17.19637 -16.83276 -15.56213 -15.22030 -14.53083 -14.20058 -13.92716 -13.66872 -13.46506 -12.97845 -12.84096 -12.70886 -12.50391 -12.17649 -11.92371 -11.61297 -11.34942 -11.08188 -10.97580 -10.60504 -10.15946 -9.98982 -9.80222 -9.48051 -9.33503 -9.21196 -8.57634 -8.20336 -6.07069 -4.04956 1.45590 2.20933 3.08422 3.25208 3.32793 3.34757 4.15344 4.34306 4.40856 4.62995 4.97705 5.08308 5.16778 5.21996 5.25861 5.34489 5.45106 5.48332 5.63855 5.70254 5.77953 5.80944 6.02905 6.07797 6.22386 6.34500 6.42546 6.69996 6.81386 7.20086 7.23669 7.45129 7.65127 7.76487 8.31192 8.51741 8.98644 9.55184 11.06584 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.006536 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.429377 B = 4283.262149 C = 5430.690265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.231 4.231 4 C 0.027 3.973 5 C 0.135 3.865 6 N -0.681 5.681 7 C 0.081 3.919 8 H 0.041 0.959 9 C -0.137 4.137 10 C -0.106 4.106 11 C -0.015 4.015 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.903 5.903 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.267 1.267 20 N -0.350 5.350 21 O 0.098 5.902 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.169 0.831 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.351 0.649 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.008 0.992 35 H 0.013 0.987 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 -10.334 -14.415 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.253 4.253 4 C -0.132 4.132 5 C 0.005 3.995 6 N -0.317 5.317 7 C -0.028 4.028 8 H 0.059 0.941 9 C -0.195 4.195 10 C -0.144 4.144 11 C -0.052 4.052 12 C -0.556 4.556 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.192 1.192 20 N -0.054 5.054 21 O 0.030 5.970 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.187 0.813 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.173 0.827 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.026 0.974 35 H 0.031 0.969 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.101 -11.836 -14.276 19.522 hybrid contribution -1.459 2.142 -0.609 2.662 sum -7.561 -9.694 -14.885 19.305 Atomic orbital electron populations 1.20319 0.84151 1.04495 1.04081 1.24458 0.96335 0.86275 1.03132 1.22476 0.91620 1.01116 1.10053 1.23489 0.97001 0.90017 1.02722 1.20219 0.89904 0.96802 0.92528 1.60566 1.06748 1.56221 1.08121 1.21682 0.88849 0.93349 0.98934 0.94137 1.21788 0.97037 0.99509 1.01163 1.21666 1.00628 0.98230 0.93878 1.19615 0.93786 0.94042 0.97797 1.21125 1.15000 1.18991 1.00522 0.90947 1.25040 0.97511 0.96001 0.94939 1.69913 1.38011 1.26240 1.20019 0.86790 0.82822 0.77855 0.81885 1.20270 1.21359 1.19226 1.73834 0.96437 1.16466 1.18616 1.84831 1.11467 1.33241 1.67458 0.89998 0.89138 0.89339 0.81310 0.93047 0.89587 0.82712 0.92657 0.92132 0.93674 0.91827 0.91779 0.97407 0.96902 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.01 0.38 -0.11 16 2 C -0.04 -0.43 7.49 -35.30 -0.26 -0.70 16 3 C -0.23 -2.91 11.06 -39.38 -0.44 -3.34 16 4 C 0.03 0.40 6.84 -82.10 -0.56 -0.16 16 5 C 0.14 1.95 6.07 -4.98 -0.03 1.92 16 6 N -0.68 -11.31 6.30 -108.00 -0.68 -11.99 16 7 C 0.08 1.34 2.65 -67.71 -0.18 1.16 16 8 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 9 C -0.14 -1.97 9.42 37.16 0.35 -1.62 16 10 C -0.11 -2.10 4.74 -26.73 -0.13 -2.23 16 11 C -0.01 -0.35 3.87 -27.88 -0.11 -0.46 16 12 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 13 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 16 Si 0.88 21.47 27.47 -169.99 -4.67 16.81 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 20 N -0.35 -5.50 12.07 33.42 0.40 -5.10 16 21 O 0.10 1.34 11.20 17.17 0.19 1.53 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 26 H 0.05 0.68 8.05 -51.93 -0.42 0.27 16 27 H 0.09 1.19 7.44 -51.93 -0.39 0.80 16 28 H 0.35 6.30 6.46 -39.29 -0.25 6.05 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.01 0.18 5.85 -51.93 -0.30 -0.12 16 35 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 301.06 15.07 4.54 4.54 Total: -1.00 -31.95 301.06 -6.35 -38.30 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.50 Total: 1.84 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.41 Total: -18.82 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.50 Total: -44.20 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: 0.19 Total: 1.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.95 -6.35 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.043 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds