Wall clock time and date at job start Sun Mar 29 2020 22:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35456 * 126.77450 * 2 1 4 4 C 1.41376 * 103.98520 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.79780 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.46789 * 95.00356 * 5 4 3 7 7 C 1.46902 * 110.99733 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47079 * 324.99814 * 7 6 5 9 9 C 1.53001 * 109.47333 * 84.99789 * 7 6 5 10 10 C 1.53001 * 109.47060 * 204.99884 * 7 6 5 11 11 C 1.53003 * 109.46995 * 65.00023 * 10 7 6 12 12 C 1.50703 * 109.46897 * 180.02562 * 11 10 7 13 13 H 1.07998 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99771 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00326 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00004 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47455 * 59.99247 * 16 14 12 18 18 H 1.48503 * 109.47371 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47049 * 299.99357 * 16 14 12 20 20 N 1.30171 * 106.39998 * 0.26306 * 4 3 2 21 21 O 1.20925 * 111.59960 * 359.53679 * 20 4 3 22 22 H 1.09007 * 109.46708 * 90.00207 * 1 2 3 23 23 H 1.09001 * 109.47156 * 209.99457 * 1 2 3 24 24 H 1.08996 * 109.47327 * 329.99934 * 1 2 3 25 25 H 1.08005 * 128.00639 * 359.94938 * 3 2 1 26 26 H 1.08999 * 109.47032 * 214.99985 * 5 4 3 27 27 H 1.08998 * 109.47488 * 335.00125 * 5 4 3 28 28 H 1.00899 * 111.00559 * 56.04582 * 6 5 4 29 29 H 1.08998 * 109.47018 * 59.99987 * 9 7 6 30 30 H 1.09001 * 109.47124 * 180.02562 * 9 7 6 31 31 H 1.08996 * 109.47133 * 300.00478 * 9 7 6 32 32 H 1.09004 * 109.47147 * 184.99854 * 10 7 6 33 33 H 1.09000 * 109.47441 * 305.00045 * 10 7 6 34 34 H 1.09004 * 109.47035 * 299.99900 * 11 10 7 35 35 H 1.08996 * 109.47597 * 60.00189 * 11 10 7 36 36 H 0.96996 * 120.00137 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9210 1.3003 0.0014 6 7 5.4036 1.4438 1.3814 7 6 6.6721 2.1837 1.4212 8 1 7.2656 1.9348 0.5415 9 6 6.3857 3.6866 1.4347 10 6 7.4465 1.8007 2.6840 11 6 7.8412 0.3242 2.6120 12 6 8.6035 -0.0531 3.8561 13 1 8.7882 0.6863 4.6213 14 6 9.0658 -1.3420 4.0169 15 7 8.8412 -2.2423 3.0849 16 14 10.0100 -1.8100 5.5593 17 1 9.1537 -1.5845 6.7515 18 1 10.3932 -3.2430 5.4895 19 1 11.2333 -0.9745 5.6634 20 7 3.4765 -0.7562 -0.0048 21 8 2.3096 -1.0735 0.0005 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 2.0344 2.1272 -0.0008 26 1 5.6608 0.7583 -0.5877 27 1 4.7632 2.2875 -0.4328 28 1 5.4964 0.5435 1.8276 29 1 5.7922 3.9355 2.3144 30 1 7.3269 4.2356 1.4637 31 1 5.8340 3.9594 0.5351 32 1 8.3447 2.4137 2.7593 33 1 6.8189 1.9668 3.5595 34 1 6.9430 -0.2887 2.5367 35 1 8.4689 0.1581 1.7366 36 1 9.1662 -3.1492 3.1983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:17 Heat of formation + Delta-G solvation = 39.530646 kcal Electronic energy + Delta-G solvation = -16569.285390 eV Core-core repulsion = 13863.089788 eV Total energy + Delta-G solvation = -2706.195602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.80056 -37.38490 -34.54579 -33.47604 -32.89103 -30.90670 -29.14660 -27.83073 -25.91558 -24.72444 -22.89947 -21.39400 -19.96000 -19.47921 -17.51417 -17.17159 -16.35901 -15.29359 -15.02704 -14.67139 -14.45887 -13.80325 -13.43905 -13.39390 -12.78790 -12.57595 -12.40721 -12.33137 -12.28024 -11.60680 -11.45628 -11.13580 -10.97322 -10.87880 -10.48458 -10.34160 -9.99899 -9.74408 -9.27622 -9.24865 -9.02292 -8.33518 -8.05858 -5.97257 -4.00180 1.56108 2.33247 3.18580 3.35299 3.39586 3.42057 4.25973 4.47551 4.48222 4.77026 5.02967 5.16013 5.19675 5.29847 5.38046 5.46931 5.54767 5.59049 5.72441 5.79381 5.88197 5.95616 6.13296 6.15663 6.33366 6.49564 6.52012 6.89532 7.08350 7.41752 7.62573 7.79084 7.84813 8.01310 8.42914 8.44244 9.06331 9.63934 11.13847 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.005172 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.533165 B = 5412.637244 C = 6243.373533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.046 4.046 3 C -0.218 4.218 4 C 0.027 3.973 5 C 0.136 3.864 6 N -0.681 5.681 7 C 0.082 3.918 8 H 0.040 0.960 9 C -0.136 4.136 10 C -0.114 4.114 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.356 5.356 21 O 0.100 5.900 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.169 0.831 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.356 0.644 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.015 0.985 35 H 0.012 0.988 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.154 8.259 -7.777 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C -0.240 4.240 4 C -0.132 4.132 5 C 0.006 3.994 6 N -0.317 5.317 7 C -0.027 4.027 8 H 0.058 0.942 9 C -0.194 4.194 10 C -0.152 4.152 11 C -0.018 4.018 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.059 5.059 21 O 0.032 5.968 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.186 0.814 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.178 0.822 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.631 7.586 -7.700 18.190 hybrid contribution 0.831 -0.261 0.495 1.002 sum -13.799 7.324 -7.206 17.204 Atomic orbital electron populations 1.20280 0.84306 1.04500 1.03729 1.24477 0.96312 0.86489 1.03721 1.22349 0.91310 1.00756 1.09578 1.23526 0.97483 0.89730 1.02455 1.20220 0.89228 0.97786 0.92174 1.60659 1.30776 1.25963 1.14346 1.21644 0.88581 0.93298 0.99225 0.94177 1.21796 1.00753 0.95506 1.01347 1.21831 0.98053 1.00326 0.94985 1.19133 0.96165 0.89313 0.97145 1.21184 1.35018 0.95468 1.04287 0.92698 1.25032 0.96272 0.96639 0.96468 1.69957 1.46351 1.03438 1.33605 0.86657 0.80355 0.77338 0.83646 1.20222 1.21296 1.20258 1.73934 0.96588 1.16571 1.18796 1.84841 1.11354 1.33162 1.67397 0.89734 0.89963 0.89244 0.81382 0.93492 0.89329 0.82151 0.92301 0.92844 0.93767 0.92521 0.92425 0.96713 0.96930 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.01 0.38 -0.09 16 2 C -0.05 -0.54 7.49 -35.30 -0.26 -0.80 16 3 C -0.22 -2.71 11.06 -39.38 -0.44 -3.15 16 4 C 0.03 0.43 6.84 -82.10 -0.56 -0.13 16 5 C 0.14 2.12 6.07 -4.97 -0.03 2.09 16 6 N -0.68 -12.13 6.30 -107.99 -0.68 -12.81 16 7 C 0.08 1.44 2.65 -67.71 -0.18 1.27 16 8 H 0.04 0.73 7.80 -51.93 -0.40 0.32 16 9 C -0.14 -1.96 9.42 37.16 0.35 -1.61 16 10 C -0.11 -2.40 4.74 -26.73 -0.13 -2.53 16 11 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 12 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 16 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 N -0.36 -6.27 12.07 33.42 0.40 -5.87 16 21 O 0.10 1.52 11.20 17.18 0.19 1.71 16 22 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.17 1.61 8.06 -52.48 -0.42 1.19 16 26 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 27 H 0.09 1.15 7.44 -51.93 -0.39 0.77 16 28 H 0.36 7.39 6.46 -39.29 -0.25 7.14 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.01 0.41 6.43 -51.93 -0.33 0.08 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -32.42 304.67 -6.72 -39.14 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.53 Total: 1.39 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.42 Total: -18.42 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.46 Total: -45.56 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.19 Total: 1.71 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.42 -6.72 -39.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.675 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds