Wall clock time and date at job start Sun Mar 29 2020 22:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35456 * 126.77450 * 2 1 4 4 C 1.41376 * 103.98520 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.79780 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.46789 * 95.00356 * 5 4 3 7 7 C 1.46902 * 110.99733 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47079 * 324.99814 * 7 6 5 9 9 C 1.53001 * 109.47333 * 84.99789 * 7 6 5 10 10 C 1.53001 * 109.47060 * 204.99884 * 7 6 5 11 11 C 1.53003 * 109.46995 * 65.00023 * 10 7 6 12 12 C 1.50703 * 109.46897 * 180.02562 * 11 10 7 13 13 H 1.07998 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99771 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00326 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00004 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47455 * 59.99247 * 16 14 12 18 18 H 1.48503 * 109.47371 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47049 * 299.99357 * 16 14 12 20 20 N 1.30171 * 106.39998 * 0.26306 * 4 3 2 21 21 O 1.20925 * 111.59960 * 359.53679 * 20 4 3 22 22 H 1.09007 * 109.46708 * 90.00207 * 1 2 3 23 23 H 1.09001 * 109.47156 * 209.99457 * 1 2 3 24 24 H 1.08996 * 109.47327 * 329.99934 * 1 2 3 25 25 H 1.08005 * 128.00639 * 359.94938 * 3 2 1 26 26 H 1.08999 * 109.47032 * 214.99985 * 5 4 3 27 27 H 1.08998 * 109.47488 * 335.00125 * 5 4 3 28 28 H 1.00899 * 111.00559 * 56.04582 * 6 5 4 29 29 H 1.08998 * 109.47018 * 59.99987 * 9 7 6 30 30 H 1.09001 * 109.47124 * 180.02562 * 9 7 6 31 31 H 1.08996 * 109.47133 * 300.00478 * 9 7 6 32 32 H 1.09004 * 109.47147 * 184.99854 * 10 7 6 33 33 H 1.09000 * 109.47441 * 305.00045 * 10 7 6 34 34 H 1.09004 * 109.47035 * 299.99900 * 11 10 7 35 35 H 1.08996 * 109.47597 * 60.00189 * 11 10 7 36 36 H 0.96996 * 120.00137 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9210 1.3003 0.0014 6 7 5.4036 1.4438 1.3814 7 6 6.6721 2.1837 1.4212 8 1 7.2656 1.9348 0.5415 9 6 6.3857 3.6866 1.4347 10 6 7.4465 1.8007 2.6840 11 6 7.8412 0.3242 2.6120 12 6 8.6035 -0.0531 3.8561 13 1 8.7882 0.6863 4.6213 14 6 9.0658 -1.3420 4.0169 15 7 8.8412 -2.2423 3.0849 16 14 10.0100 -1.8100 5.5593 17 1 9.1537 -1.5845 6.7515 18 1 10.3932 -3.2430 5.4895 19 1 11.2333 -0.9745 5.6634 20 7 3.4765 -0.7562 -0.0048 21 8 2.3096 -1.0735 0.0005 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 2.0344 2.1272 -0.0008 26 1 5.6608 0.7583 -0.5877 27 1 4.7632 2.2875 -0.4328 28 1 5.4964 0.5435 1.8276 29 1 5.7922 3.9355 2.3144 30 1 7.3269 4.2356 1.4637 31 1 5.8340 3.9594 0.5351 32 1 8.3447 2.4137 2.7593 33 1 6.8189 1.9668 3.5595 34 1 6.9430 -0.2887 2.5367 35 1 8.4689 0.1581 1.7366 36 1 9.1662 -3.1492 3.1983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:17 Heat of formation + Delta-G solvation = 17.860479 kcal Electronic energy + Delta-G solvation = -16570.225079 eV Core-core repulsion = 13863.089788 eV Total energy + Delta-G solvation = -2707.135291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.92039 -38.84033 -35.94203 -34.96353 -34.26318 -32.54351 -30.75585 -28.62219 -27.38490 -26.48625 -24.01461 -23.25787 -21.21951 -20.86865 -18.66196 -18.61043 -18.17171 -16.74257 -16.57144 -16.46011 -15.74970 -14.74690 -14.64846 -14.41386 -14.32255 -13.91160 -13.81222 -13.59029 -13.22443 -13.11777 -13.09041 -12.83010 -12.53962 -12.39244 -12.12524 -11.88037 -11.63161 -11.37046 -11.20244 -10.95196 -10.58713 -10.23067 -9.48847 -8.23199 -6.35474 0.56989 1.24595 1.36679 1.40475 1.48440 2.31305 2.38148 3.08855 3.11637 3.41352 3.54025 4.02383 4.15396 4.21158 4.31796 4.38509 4.44591 4.56629 4.69927 4.74698 4.77680 4.94193 4.97745 5.01687 5.04852 5.05696 5.17408 5.30896 5.43370 5.49864 5.62521 5.79580 6.08030 6.18081 6.21415 6.81579 7.34346 7.37604 8.88217 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.005172 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.533165 B = 5412.637244 C = 6243.373533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.037 4.037 3 C -0.222 4.222 4 C 0.008 3.992 5 C 0.138 3.862 6 N -0.680 5.680 7 C 0.084 3.916 8 H 0.031 0.969 9 C -0.126 4.126 10 C -0.101 4.101 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.062 0.938 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.264 1.264 20 N -0.407 5.407 21 O 0.085 5.915 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.200 0.800 26 H 0.027 0.973 27 H 0.121 0.879 28 H 0.334 0.666 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.055 0.945 34 H -0.011 1.011 35 H -0.018 1.018 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 10.126 -7.215 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 C -0.244 4.244 4 C -0.150 4.150 5 C 0.009 3.991 6 N -0.313 5.313 7 C -0.025 4.025 8 H 0.049 0.951 9 C -0.184 4.184 10 C -0.139 4.139 11 C -0.011 4.011 12 C -0.583 4.583 13 H 0.080 0.920 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.189 1.189 20 N -0.113 5.113 21 O 0.019 5.981 22 H 0.125 0.875 23 H 0.108 0.892 24 H 0.131 0.869 25 H 0.217 0.783 26 H 0.045 0.955 27 H 0.139 0.861 28 H 0.153 0.847 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.007 0.993 35 H 0.001 0.999 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.885 9.486 -7.147 19.834 hybrid contribution 1.140 -0.858 0.272 1.453 sum -14.745 8.627 -6.875 18.415 Atomic orbital electron populations 1.20571 0.80427 1.06026 1.05586 1.25444 0.98222 0.85227 1.01118 1.22708 0.89611 1.02444 1.09613 1.23778 0.98786 0.89652 1.02788 1.20302 0.88935 0.99231 0.90668 1.60785 1.30525 1.24428 1.15579 1.21637 0.88189 0.95790 0.96863 0.95061 1.21709 1.01859 0.92222 1.02564 1.21652 0.98832 0.96563 0.96874 1.19008 0.94245 0.92708 0.95174 1.21673 1.35330 0.96057 1.05238 0.91981 1.26035 0.97252 0.96565 1.00093 1.70113 1.47557 1.03866 1.35953 0.85473 0.79127 0.77133 0.79161 1.19112 1.20895 1.18865 1.73928 0.98135 1.18055 1.21202 1.84775 1.11094 1.34607 1.67592 0.87504 0.89162 0.86925 0.78262 0.95502 0.86110 0.84732 0.92152 0.91527 0.91495 0.91726 0.92583 0.99275 0.99924 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.45 71.24 0.74 0.06 16 2 C -0.04 -0.79 7.49 25.04 0.19 -0.61 16 3 C -0.22 -5.15 11.06 22.40 0.25 -4.90 16 4 C 0.01 0.25 6.84 43.58 0.30 0.55 16 5 C 0.14 4.33 6.07 85.56 0.52 4.84 16 6 N -0.68 -24.50 6.30 -495.56 -3.12 -27.62 16 7 C 0.08 2.96 2.65 44.92 0.12 3.08 16 8 H 0.03 1.15 7.80 -2.39 -0.02 1.13 16 9 C -0.13 -3.30 9.42 71.98 0.68 -2.62 16 10 C -0.10 -4.31 4.74 30.60 0.15 -4.16 16 11 C 0.03 1.42 4.80 29.85 0.14 1.56 16 12 C -0.55 -32.21 9.11 25.60 0.23 -31.98 16 13 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 15 N -0.93 -59.46 13.29 21.45 0.28 -59.18 16 16 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 N -0.41 -14.98 12.07 -49.57 -0.60 -15.58 16 21 O 0.09 2.63 11.20 71.64 0.80 3.43 16 22 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 23 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 26 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 27 H 0.12 2.93 7.44 -2.39 -0.02 2.91 16 28 H 0.33 14.61 6.46 -89.69 -0.58 14.03 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.47 7.45 -2.39 -0.02 1.45 16 32 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H -0.01 -0.65 6.43 -2.38 -0.02 -0.67 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -73.18 304.67 3.65 -69.53 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.48 Total: 15.49 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.78 Total: -33.82 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.43 Total: -102.38 kcal Atomic # 8 Polarization: 2.63 SS G_CDS: 0.80 Total: 3.43 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.18 3.65 -69.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.388 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds