Wall clock time and date at job start Sun Mar 29 2020 22:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34039 * 126.78039 * 2 1 4 4 N 1.20922 * 111.57074 * 179.97438 * 3 2 1 5 5 C 1.30175 * 111.59955 * 359.74627 * 4 3 2 6 6 C 1.35456 * 126.77694 * 179.97438 * 2 1 3 7 7 C 1.50696 * 128.00406 * 359.96934 * 6 2 1 8 8 N 1.46897 * 109.47624 * 79.99698 * 7 6 2 9 9 C 1.46899 * 111.00355 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47043 * 324.99919 * 9 8 7 11 11 C 1.53002 * 109.47394 * 84.99974 * 9 8 7 12 12 C 1.52997 * 109.47254 * 204.99848 * 9 8 7 13 13 C 1.53004 * 109.47236 * 64.99771 * 12 9 8 14 14 C 1.50703 * 109.47376 * 180.02562 * 13 12 9 15 15 H 1.07998 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00099 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99813 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47121 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46977 * 120.00444 * 18 16 14 21 21 H 1.48496 * 109.47124 * 240.00145 * 18 16 14 22 22 H 1.09011 * 109.46793 * 270.00044 * 1 2 3 23 23 H 1.09001 * 109.46974 * 29.99752 * 1 2 3 24 24 H 1.08993 * 109.47257 * 150.00292 * 1 2 3 25 25 H 1.08007 * 126.79751 * 180.25179 * 5 4 3 26 26 H 1.09006 * 109.47702 * 319.99248 * 7 6 2 27 27 H 1.09006 * 109.47126 * 199.99898 * 7 6 2 28 28 H 1.00901 * 110.99813 * 303.95300 * 8 7 6 29 29 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 30 30 H 1.09000 * 109.46986 * 300.00133 * 11 9 8 31 31 H 1.09002 * 109.47075 * 59.99404 * 11 9 8 32 32 H 1.09001 * 109.47630 * 184.99901 * 12 9 8 33 33 H 1.09004 * 109.47346 * 305.00031 * 12 9 8 34 34 H 1.09001 * 109.46917 * 300.00567 * 13 12 9 35 35 H 1.09004 * 109.46741 * 59.99889 * 13 12 9 36 36 H 0.96995 * 119.99701 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7563 0.0005 5 6 3.6213 -0.5373 0.0063 6 6 2.3180 -1.0850 0.0005 7 6 1.9224 -2.5391 0.0018 8 7 1.5611 -2.9496 -1.3616 9 6 1.1696 -4.3649 -1.3990 10 1 1.7686 -4.9266 -0.6822 11 6 -0.3116 -4.4942 -1.0381 12 6 1.4023 -4.9215 -2.8051 13 6 2.9000 -4.9073 -3.1178 14 6 3.1292 -5.4549 -4.5030 15 1 2.2905 -5.7801 -5.1007 16 6 4.4094 -5.5398 -5.0077 17 7 5.4307 -5.1434 -4.2800 18 14 4.6935 -6.2193 -6.7243 19 1 3.3905 -6.5932 -7.3306 20 1 5.3509 -5.1853 -7.5634 21 1 5.5651 -7.4189 -6.6439 22 1 -0.3633 0.0000 1.0278 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5137 25 1 4.5528 -1.0840 0.0118 26 1 1.0677 -2.6826 0.6629 27 1 2.7590 -3.1429 0.3534 28 1 0.8304 -2.3620 -1.7345 29 1 -0.6020 -5.5444 -1.0655 30 1 -0.4774 -4.0977 -0.0364 31 1 -0.9106 -3.9324 -1.7549 32 1 1.0299 -5.9446 -2.8572 33 1 0.8736 -4.3049 -3.5320 34 1 3.2723 -3.8842 -3.0657 35 1 3.4287 -5.5239 -2.3908 36 1 6.3314 -5.2035 -4.6349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:21 Heat of formation + Delta-G solvation = 41.481523 kcal Electronic energy + Delta-G solvation = -16786.342899 eV Core-core repulsion = 14080.231893 eV Total energy + Delta-G solvation = -2706.111006 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.81530 -37.52408 -34.71571 -33.11042 -32.94690 -31.03863 -29.11875 -27.82069 -25.59001 -24.76759 -22.49010 -21.37432 -20.52189 -19.80118 -17.52709 -17.05860 -16.11411 -15.35521 -15.04170 -14.46636 -14.40335 -14.04285 -13.40041 -13.25374 -12.85787 -12.80520 -12.48573 -12.31991 -12.23016 -11.70521 -11.35561 -11.15696 -11.04254 -10.85408 -10.42195 -10.32669 -10.11669 -9.65104 -9.22963 -9.12584 -8.89259 -8.23424 -7.93253 -5.88262 -3.89262 1.51458 2.37151 3.15005 3.36654 3.44009 3.47827 4.40469 4.54574 4.59889 4.63943 4.87605 5.05867 5.21180 5.29039 5.36696 5.47522 5.48878 5.57397 5.62405 5.62822 5.80631 5.89194 6.06262 6.19448 6.23881 6.36485 6.64220 6.86577 7.28455 7.43046 7.72614 7.85149 8.07871 8.23478 8.35602 8.57932 9.20031 9.73517 11.22935 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024899 B = 0.005500 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.287831 B = 5089.698952 C = 5851.557289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.039 4.039 3 O 0.092 5.908 4 N -0.372 5.372 5 C 0.013 3.987 6 C -0.186 4.186 7 C 0.136 3.864 8 N -0.666 5.666 9 C 0.084 3.916 10 H 0.074 0.926 11 C -0.181 4.181 12 C -0.098 4.098 13 C 0.028 3.972 14 C -0.518 4.518 15 H 0.051 0.949 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.886 3.114 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.192 0.808 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.334 0.666 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.007 0.993 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.498 7.560 11.173 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 O 0.027 5.973 4 N -0.076 5.076 5 C -0.166 4.166 6 C -0.190 4.190 7 C 0.007 3.993 8 N -0.297 5.297 9 C -0.026 4.026 10 H 0.092 0.908 11 C -0.240 4.240 12 C -0.136 4.136 13 C -0.009 4.009 14 C -0.556 4.556 15 H 0.069 0.931 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.715 3.285 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.212 1.212 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.209 0.791 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.152 0.848 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.025 0.975 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.801 8.484 10.974 16.984 hybrid contribution -0.749 -1.157 -0.614 1.509 sum -10.550 7.327 10.360 16.502 Atomic orbital electron populations 1.20290 0.84394 1.04481 1.03697 1.24234 0.96036 0.86128 1.03930 1.84768 1.11518 1.33092 1.67900 1.73857 0.96931 1.17062 1.19785 1.24973 1.00107 0.89885 1.01594 1.21089 0.92324 0.97125 1.08460 1.20149 0.99949 0.88308 0.90915 1.60537 1.46332 1.03676 1.19140 1.21770 0.92464 0.88122 1.00213 0.90797 1.22551 0.98840 1.02373 1.00273 1.21630 1.01600 0.98030 0.92359 1.19008 0.88668 0.97966 0.95218 1.21384 0.92161 1.41149 1.00918 0.93062 1.24998 0.96387 0.95812 0.97256 1.69984 0.98609 1.48129 1.36763 0.86630 0.78086 0.78660 0.85161 1.19871 1.21139 1.21165 0.89724 0.89809 0.89450 0.79145 0.94512 0.89548 0.84778 0.92094 0.93697 0.92748 0.93416 0.93486 0.94934 0.97479 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.30 36.00 0.37 -0.17 16 2 C -0.04 -0.46 7.49 -35.30 -0.26 -0.73 16 3 O 0.09 1.29 11.20 17.18 0.19 1.48 16 4 N -0.37 -5.82 12.07 30.35 0.37 -5.46 16 5 C 0.01 0.20 12.16 -17.06 -0.21 -0.01 16 6 C -0.19 -2.51 5.84 -104.43 -0.61 -3.12 16 7 C 0.14 1.78 5.81 -4.98 -0.03 1.75 16 8 N -0.67 -10.22 5.69 -107.99 -0.61 -10.84 16 9 C 0.08 1.32 2.59 -67.71 -0.18 1.14 16 10 H 0.07 1.21 7.80 -51.93 -0.40 0.80 16 11 C -0.18 -2.21 9.16 37.16 0.34 -1.87 16 12 C -0.10 -1.98 4.83 -26.73 -0.13 -2.11 16 13 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 18 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.62 7.51 -51.93 -0.39 0.23 16 25 H 0.19 2.57 8.06 -52.48 -0.42 2.15 16 26 H 0.04 0.40 7.44 -51.93 -0.39 0.02 16 27 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 28 H 0.33 4.64 7.92 -39.29 -0.31 4.33 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.47 7.45 -51.93 -0.39 0.08 16 31 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 305.72 15.07 4.61 4.61 Total: -1.00 -32.60 305.72 -6.61 -39.20 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.62 Total: -1.01 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.25 Total: -18.25 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.49 Total: -43.17 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.19 Total: 1.48 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.60 -6.61 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.685 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds