Wall clock time and date at job start Sun Mar 29 2020 22:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41380 * 126.80028 * 2 1 4 4 C 1.35448 * 103.98449 * 180.09880 * 3 2 1 5 5 C 1.50701 * 126.77479 * 179.91002 * 4 3 2 6 6 N 1.46901 * 109.46921 * 89.70898 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46871 * 35.00433 * 7 6 5 9 9 C 1.52994 * 109.47113 * 275.00325 * 7 6 5 10 10 C 1.53002 * 109.47092 * 155.00227 * 7 6 5 11 11 C 1.53004 * 109.47119 * 295.00039 * 10 7 6 12 12 C 1.50696 * 109.47273 * 179.97438 * 11 10 7 13 13 H 1.08008 * 119.99688 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00287 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99620 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00272 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47230 * 60.00165 * 16 14 12 18 18 H 1.48499 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46964 * 300.00367 * 16 14 12 20 20 O 1.34037 * 106.44709 * 359.64769 * 4 3 2 21 21 N 1.20925 * 111.56480 * 0.24221 * 20 4 3 22 22 H 1.09008 * 109.46840 * 270.28636 * 1 2 3 23 23 H 1.08997 * 109.47401 * 30.28320 * 1 2 3 24 24 H 1.08993 * 109.47238 * 150.29200 * 1 2 3 25 25 H 1.08011 * 128.00576 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47060 * 209.71079 * 5 4 3 27 27 H 1.09001 * 109.47380 * 329.71167 * 5 4 3 28 28 H 1.00899 * 111.00283 * 303.95218 * 6 5 4 29 29 H 1.08996 * 109.47268 * 180.02562 * 9 7 6 30 30 H 1.09003 * 109.47340 * 299.99821 * 9 7 6 31 31 H 1.08995 * 109.47731 * 59.99955 * 9 7 6 32 32 H 1.08998 * 109.46846 * 54.99830 * 10 7 6 33 33 H 1.08995 * 109.47022 * 175.00292 * 10 7 6 34 34 H 1.08999 * 109.47179 * 300.00188 * 11 10 7 35 35 H 1.09004 * 109.46918 * 59.99924 * 11 10 7 36 36 H 0.97000 * 119.99481 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0023 5 6 4.9021 1.3697 -0.0052 6 7 5.3236 1.6241 1.3789 7 6 6.5904 2.3671 1.4153 8 1 6.6254 3.0666 0.5800 9 6 7.7599 1.3866 1.3087 10 6 6.6909 3.1397 2.7321 11 6 5.5947 4.2059 2.7828 12 6 5.6932 4.9664 4.0800 13 1 6.4613 4.7148 4.7965 14 6 4.8037 5.9842 4.3518 15 7 3.8688 6.2909 3.4791 16 14 4.9263 6.9274 5.9595 17 1 6.2570 7.5803 6.0501 18 1 3.8623 7.9621 6.0087 19 1 4.7568 5.9891 7.0980 20 8 3.4538 -0.7252 0.0045 21 7 2.2868 -1.0422 0.0056 22 1 -0.3633 0.0051 1.0277 23 1 -0.3634 0.8874 -0.5182 24 1 -0.3633 -0.8925 -0.5093 25 1 2.0708 2.1744 0.0004 26 1 5.6663 0.7836 -0.5158 27 1 4.7653 2.3187 -0.5236 28 1 4.6040 2.1104 1.8924 29 1 8.6999 1.9378 1.3361 30 1 7.7249 0.6871 2.1439 31 1 7.6884 0.8362 0.3707 32 1 6.5668 2.4510 3.5677 33 1 7.6674 3.6193 2.7983 34 1 5.7187 4.8946 1.9471 35 1 4.6180 3.7263 2.7165 36 1 3.2427 7.0066 3.6705 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:19 Heat of formation + Delta-G solvation = 38.414857 kcal Electronic energy + Delta-G solvation = -16614.422521 eV Core-core repulsion = 13908.178535 eV Total energy + Delta-G solvation = -2706.243986 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.76927 -37.43597 -34.69015 -33.81465 -32.62005 -30.35919 -29.08733 -28.64369 -25.72798 -24.62318 -22.88976 -21.44846 -20.09194 -19.56847 -17.45524 -17.19465 -16.36867 -15.35446 -15.05118 -14.62651 -14.41515 -13.86228 -13.39093 -13.10888 -12.97645 -12.73891 -12.59696 -12.40415 -12.03626 -11.69998 -11.46754 -11.17807 -11.01715 -10.91625 -10.53766 -10.38608 -9.91402 -9.82335 -9.37464 -9.29641 -9.08256 -8.40152 -8.16472 -6.04999 -4.06952 1.55688 2.31289 3.20550 3.31126 3.35487 3.38267 4.25976 4.41835 4.42759 4.66984 5.14488 5.18707 5.31247 5.32182 5.42039 5.44634 5.53240 5.59558 5.69469 5.81504 5.84076 5.89353 6.11320 6.18064 6.29138 6.44867 6.48443 6.83853 7.01018 7.30531 7.54177 7.70854 7.75528 7.93975 8.37652 8.38218 8.99284 9.57580 11.06269 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.005541 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.946567 B = 5052.281479 C = 6109.239186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.013 3.987 3 C -0.229 4.229 4 C -0.012 4.012 5 C 0.135 3.865 6 N -0.683 5.683 7 C 0.084 3.916 8 H 0.042 0.958 9 C -0.138 4.138 10 C -0.115 4.115 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 O 0.103 5.897 21 N -0.372 5.372 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.172 0.828 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.357 0.643 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -9.463 -8.671 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.145 4.145 3 C -0.251 4.251 4 C -0.076 4.076 5 C 0.005 3.995 6 N -0.319 5.319 7 C -0.025 4.025 8 H 0.060 0.940 9 C -0.196 4.196 10 C -0.153 4.153 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 O 0.037 5.963 21 N -0.078 5.078 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.189 0.811 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.179 0.821 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.475 -11.271 -8.616 14.263 hybrid contribution -0.474 2.384 0.651 2.516 sum -1.949 -8.887 -7.965 12.092 Atomic orbital electron populations 1.20144 0.86136 1.03460 1.03413 1.23564 0.98954 0.88955 1.03050 1.22529 0.91320 1.01346 1.09941 1.24443 0.98081 0.83557 1.01518 1.20393 0.89496 0.96717 0.92852 1.60627 1.07056 1.53605 1.10649 1.21644 0.88477 0.93144 0.99269 0.93974 1.21813 0.97092 0.99322 1.01407 1.21846 1.01163 0.97988 0.94330 1.19135 0.92829 0.92625 0.97127 1.21194 1.14732 1.16649 1.03267 0.92679 1.25011 0.95336 0.97175 0.96830 1.69942 1.17837 1.30620 1.35197 0.86657 0.77671 0.79619 0.84065 1.20232 1.21308 1.20205 1.84796 1.21320 1.22945 1.67233 1.73809 0.89500 1.24283 1.20184 0.90161 0.90058 0.90837 0.81054 0.89040 0.91627 0.82059 0.92772 0.92202 0.93599 0.92319 0.92415 0.96871 0.96735 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.47 36.01 0.38 -0.37 16 2 C 0.01 0.18 7.33 -82.10 -0.60 -0.42 16 3 C -0.23 -3.17 11.06 -39.38 -0.44 -3.61 16 4 C -0.01 -0.17 7.00 -35.30 -0.25 -0.42 16 5 C 0.14 1.81 6.05 -4.97 -0.03 1.78 16 6 N -0.68 -10.92 6.30 -107.99 -0.68 -11.60 16 7 C 0.08 1.35 2.65 -67.71 -0.18 1.17 16 8 H 0.04 0.68 7.80 -51.93 -0.41 0.27 16 9 C -0.14 -1.90 9.41 37.15 0.35 -1.55 16 10 C -0.12 -2.27 4.74 -26.73 -0.13 -2.40 16 11 C 0.02 0.49 4.80 -27.88 -0.13 0.36 16 12 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 13 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 O 0.10 1.60 11.20 17.18 0.19 1.79 16 21 N -0.37 -5.86 12.07 33.42 0.40 -5.46 16 22 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 26 H 0.09 1.08 7.44 -51.93 -0.39 0.69 16 27 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 28 H 0.36 6.42 6.46 -39.29 -0.25 6.17 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.01 0.37 6.43 -51.93 -0.33 0.04 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -30.03 304.67 -6.75 -36.77 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.53 Total: 1.67 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -1.44 Total: -18.63 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.46 Total: -42.57 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.19 Total: 1.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.03 -6.75 -36.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.189 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds