Wall clock time and date at job start Sun Mar 29 2020 22:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41380 * 126.80028 * 2 1 4 4 C 1.35448 * 103.98449 * 180.09880 * 3 2 1 5 5 C 1.50701 * 126.77479 * 179.91002 * 4 3 2 6 6 N 1.46901 * 109.46921 * 89.70898 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46871 * 35.00433 * 7 6 5 9 9 C 1.52994 * 109.47113 * 275.00325 * 7 6 5 10 10 C 1.53002 * 109.47092 * 155.00227 * 7 6 5 11 11 C 1.53004 * 109.47119 * 295.00039 * 10 7 6 12 12 C 1.50696 * 109.47273 * 179.97438 * 11 10 7 13 13 H 1.08008 * 119.99688 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00287 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99620 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00272 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47230 * 60.00165 * 16 14 12 18 18 H 1.48499 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46964 * 300.00367 * 16 14 12 20 20 O 1.34037 * 106.44709 * 359.64769 * 4 3 2 21 21 N 1.20925 * 111.56480 * 0.24221 * 20 4 3 22 22 H 1.09008 * 109.46840 * 270.28636 * 1 2 3 23 23 H 1.08997 * 109.47401 * 30.28320 * 1 2 3 24 24 H 1.08993 * 109.47238 * 150.29200 * 1 2 3 25 25 H 1.08011 * 128.00576 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47060 * 209.71079 * 5 4 3 27 27 H 1.09001 * 109.47380 * 329.71167 * 5 4 3 28 28 H 1.00899 * 111.00283 * 303.95218 * 6 5 4 29 29 H 1.08996 * 109.47268 * 180.02562 * 9 7 6 30 30 H 1.09003 * 109.47340 * 299.99821 * 9 7 6 31 31 H 1.08995 * 109.47731 * 59.99955 * 9 7 6 32 32 H 1.08998 * 109.46846 * 54.99830 * 10 7 6 33 33 H 1.08995 * 109.47022 * 175.00292 * 10 7 6 34 34 H 1.08999 * 109.47179 * 300.00188 * 11 10 7 35 35 H 1.09004 * 109.46918 * 59.99924 * 11 10 7 36 36 H 0.97000 * 119.99481 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0023 5 6 4.9021 1.3697 -0.0052 6 7 5.3236 1.6241 1.3789 7 6 6.5904 2.3671 1.4153 8 1 6.6254 3.0666 0.5800 9 6 7.7599 1.3866 1.3087 10 6 6.6909 3.1397 2.7321 11 6 5.5947 4.2059 2.7828 12 6 5.6932 4.9664 4.0800 13 1 6.4613 4.7148 4.7965 14 6 4.8037 5.9842 4.3518 15 7 3.8688 6.2909 3.4791 16 14 4.9263 6.9274 5.9595 17 1 6.2570 7.5803 6.0501 18 1 3.8623 7.9621 6.0087 19 1 4.7568 5.9891 7.0980 20 8 3.4538 -0.7252 0.0045 21 7 2.2868 -1.0422 0.0056 22 1 -0.3633 0.0051 1.0277 23 1 -0.3634 0.8874 -0.5182 24 1 -0.3633 -0.8925 -0.5093 25 1 2.0708 2.1744 0.0004 26 1 5.6663 0.7836 -0.5158 27 1 4.7653 2.3187 -0.5236 28 1 4.6040 2.1104 1.8924 29 1 8.6999 1.9378 1.3361 30 1 7.7249 0.6871 2.1439 31 1 7.6884 0.8362 0.3707 32 1 6.5668 2.4510 3.5677 33 1 7.6674 3.6193 2.7983 34 1 5.7187 4.8946 1.9471 35 1 4.6180 3.7263 2.7165 36 1 3.2427 7.0066 3.6705 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:18 Heat of formation + Delta-G solvation = 19.886932 kcal Electronic energy + Delta-G solvation = -16615.225952 eV Core-core repulsion = 13908.178535 eV Total energy + Delta-G solvation = -2707.047418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.88316 -38.76841 -35.77357 -35.47583 -34.22600 -31.90272 -30.48101 -29.55892 -27.23529 -26.15174 -24.00027 -23.18547 -21.24357 -20.92269 -18.61064 -18.59847 -18.16132 -16.67579 -16.52261 -16.33419 -15.62901 -14.98263 -14.50041 -14.31763 -14.23650 -14.14998 -13.96976 -13.59495 -13.28431 -13.10846 -13.00136 -12.80997 -12.45843 -12.36970 -12.13818 -11.87028 -11.56855 -11.30249 -10.97407 -10.95170 -10.52421 -10.45476 -9.41519 -8.19222 -6.28666 0.42997 1.23895 1.40914 1.42734 1.50510 2.11192 2.41797 3.14135 3.26719 3.27806 3.55611 4.04943 4.08968 4.18408 4.33147 4.40840 4.51145 4.57704 4.61993 4.67426 4.81678 4.89327 4.92135 5.01805 5.06905 5.11548 5.23694 5.24181 5.48820 5.55896 5.71295 5.86352 6.12071 6.27312 6.31846 6.87406 7.26925 7.40218 8.91752 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.005541 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.946567 B = 5052.281479 C = 6109.239186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.238 4.238 4 C -0.016 4.016 5 C 0.138 3.862 6 N -0.690 5.690 7 C 0.089 3.911 8 H 0.044 0.956 9 C -0.131 4.131 10 C -0.104 4.104 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.056 0.944 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.270 1.270 20 O 0.087 5.913 21 N -0.397 5.397 22 H 0.087 0.913 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.183 0.817 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.342 0.658 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.061 0.939 34 H -0.010 1.010 35 H -0.001 1.001 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.069 -9.533 -8.636 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C -0.260 4.260 4 C -0.080 4.080 5 C 0.009 3.991 6 N -0.324 5.324 7 C -0.020 4.020 8 H 0.062 0.938 9 C -0.189 4.189 10 C -0.142 4.142 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.074 0.926 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.783 3.217 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.195 1.195 20 O 0.024 5.976 21 N -0.105 5.105 22 H 0.106 0.894 23 H 0.119 0.881 24 H 0.101 0.899 25 H 0.200 0.800 26 H 0.130 0.870 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.008 0.992 35 H 0.018 0.982 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.099 -11.354 -8.590 14.280 hybrid contribution -0.614 2.413 0.617 2.565 sum -1.713 -8.942 -7.972 12.101 Atomic orbital electron populations 1.20321 0.83652 1.04941 1.04304 1.24179 1.00610 0.88408 1.01448 1.22801 0.91387 1.01991 1.09801 1.24646 0.98657 0.83348 1.01348 1.20479 0.89762 0.97321 0.91571 1.60683 1.06571 1.53049 1.12146 1.21571 0.89683 0.93642 0.97058 0.93767 1.21752 0.96213 0.98726 1.02230 1.21666 0.99361 0.96780 0.96349 1.19016 0.93873 0.93145 0.95055 1.21672 1.14781 1.17231 1.04497 0.92566 1.25873 0.94975 0.98213 1.00321 1.70059 1.18582 1.31246 1.37088 0.85606 0.77995 0.78272 0.79821 1.19284 1.20877 1.19505 1.84760 1.21502 1.23458 1.67842 1.73801 0.89785 1.25256 1.21702 0.89430 0.88080 0.89890 0.79999 0.87023 0.90693 0.83757 0.91565 0.92732 0.91653 0.92997 0.92046 0.99155 0.98238 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.47 71.24 0.75 -0.65 16 2 C 0.01 0.33 7.33 43.58 0.32 0.64 16 3 C -0.24 -6.44 11.06 22.40 0.25 -6.19 16 4 C -0.02 -0.45 7.00 25.04 0.18 -0.27 16 5 C 0.14 3.52 6.05 85.56 0.52 4.04 16 6 N -0.69 -21.59 6.30 -495.56 -3.12 -24.71 16 7 C 0.09 2.78 2.65 44.91 0.12 2.90 16 8 H 0.04 1.37 7.80 -2.39 -0.02 1.35 16 9 C -0.13 -3.29 9.41 71.98 0.68 -2.61 16 10 C -0.10 -4.05 4.74 30.60 0.15 -3.90 16 11 C 0.03 1.31 4.80 29.85 0.14 1.45 16 12 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 13 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 16 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 O 0.09 2.69 11.20 71.66 0.80 3.49 16 21 N -0.40 -12.37 12.07 -49.57 -0.60 -12.97 16 22 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.18 4.41 8.06 -2.90 -0.02 4.39 16 26 H 0.11 2.39 7.44 -2.39 -0.02 2.37 16 27 H 0.08 1.79 8.06 -2.39 -0.02 1.77 16 28 H 0.34 12.44 6.46 -89.69 -0.58 11.86 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.39 7.45 -2.39 -0.02 1.38 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.00 -0.03 6.43 -2.39 -0.02 -0.05 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -63.90 304.67 3.66 -60.24 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.48 Total: 16.82 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 3.79 Total: -33.92 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -3.43 Total: -92.31 kcal Atomic # 8 Polarization: 2.69 SS G_CDS: 0.80 Total: 3.49 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -63.90 3.66 -60.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.123 kcal (2) G-P(sol) polarization free energy of solvation -63.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds