Wall clock time and date at job start Sun Mar 29 2020 22:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41379 * 126.80355 * 2 1 4 4 C 1.35452 * 103.98270 * 180.09074 * 3 2 1 5 5 C 1.50699 * 126.77555 * 179.90830 * 4 3 2 6 6 N 1.46906 * 109.46990 * 89.71064 * 5 4 3 7 7 C 1.46902 * 110.99573 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47515 * 325.00070 * 7 6 5 9 9 C 1.52999 * 109.47197 * 85.00442 * 7 6 5 10 10 C 1.53007 * 109.46831 * 204.99716 * 7 6 5 11 11 C 1.53000 * 109.46772 * 65.00357 * 10 7 6 12 12 C 1.50699 * 109.46847 * 180.02562 * 11 10 7 13 13 H 1.08001 * 120.00317 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99792 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99988 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99749 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47527 * 89.99800 * 16 14 12 18 18 H 1.48502 * 109.47235 * 209.99676 * 16 14 12 19 19 H 1.48497 * 109.47235 * 329.99505 * 16 14 12 20 20 O 1.34037 * 106.44603 * 359.64553 * 4 3 2 21 21 N 1.20915 * 111.57071 * 0.24161 * 20 4 3 22 22 H 1.09004 * 109.47378 * 270.29713 * 1 2 3 23 23 H 1.09006 * 109.46934 * 30.29547 * 1 2 3 24 24 H 1.08996 * 109.47139 * 150.28978 * 1 2 3 25 25 H 1.07995 * 128.00471 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47064 * 329.71341 * 5 4 3 27 27 H 1.09000 * 109.47099 * 209.71067 * 5 4 3 28 28 H 1.00896 * 111.00309 * 56.04484 * 6 5 4 29 29 H 1.08999 * 109.47708 * 59.99506 * 9 7 6 30 30 H 1.09000 * 109.47499 * 180.02562 * 9 7 6 31 31 H 1.09011 * 109.46887 * 299.99666 * 9 7 6 32 32 H 1.09003 * 109.47093 * 185.00164 * 10 7 6 33 33 H 1.08994 * 109.46960 * 305.00224 * 10 7 6 34 34 H 1.09003 * 109.47155 * 299.99770 * 11 10 7 35 35 H 1.09000 * 109.47401 * 59.99743 * 11 10 7 36 36 H 0.97007 * 119.99836 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0021 5 6 4.9022 1.3693 -0.0049 6 7 5.3236 1.6239 1.3792 7 6 6.5898 2.3678 1.4155 8 1 7.2214 2.0510 0.5856 9 6 6.3046 3.8662 1.2962 10 6 7.3073 2.0890 2.7378 11 6 7.7033 0.6125 2.8017 12 6 8.4095 0.3378 4.1043 13 1 8.5610 1.1364 4.8154 14 6 8.8630 -0.9331 4.3879 15 7 8.6789 -1.9055 3.5219 16 14 9.7376 -1.2738 6.0029 17 1 8.7419 -1.6681 7.0316 18 1 10.7159 -2.3749 5.8134 19 1 10.4505 -0.0494 6.4477 20 8 3.4537 -0.7254 0.0048 21 7 2.2868 -1.0424 0.0058 22 1 -0.3634 0.0053 1.0277 23 1 -0.3633 0.8874 -0.5184 24 1 -0.3633 -0.8925 -0.5093 25 1 2.0710 2.1742 0.0004 26 1 4.7655 2.3183 -0.5235 27 1 5.6663 0.7831 -0.5154 28 1 5.3948 0.7625 1.8997 29 1 5.6731 4.1832 2.1261 30 1 7.2441 4.4182 1.3227 31 1 5.7934 4.0649 0.3541 32 1 8.2019 2.7083 2.8034 33 1 6.6417 2.3229 3.5687 34 1 6.8087 -0.0068 2.7361 35 1 8.3689 0.3786 1.9707 36 1 8.9976 -2.7996 3.7216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:21 Heat of formation + Delta-G solvation = 39.217857 kcal Electronic energy + Delta-G solvation = -16591.745613 eV Core-core repulsion = 13885.536447 eV Total energy + Delta-G solvation = -2706.209166 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.77788 -37.42121 -34.70681 -33.79780 -32.59656 -30.35513 -29.10000 -28.68223 -25.70453 -24.60276 -22.93382 -21.43279 -20.05902 -19.57041 -17.45399 -17.11502 -16.41596 -15.47168 -15.11212 -14.64162 -14.45949 -13.51556 -13.40890 -13.15826 -12.99759 -12.73732 -12.57569 -12.39029 -12.27833 -11.62426 -11.50271 -11.20525 -10.97929 -10.90748 -10.49718 -10.35758 -9.93305 -9.80503 -9.36050 -9.27447 -9.04398 -8.36872 -8.16603 -6.00394 -4.02950 1.55914 2.30322 3.19426 3.32589 3.38944 3.41906 4.24044 4.44622 4.46165 4.62313 5.06422 5.21566 5.27524 5.35414 5.36737 5.42073 5.50286 5.60166 5.68165 5.78557 5.83006 5.86560 6.09552 6.14991 6.27585 6.45318 6.46328 6.84578 7.03376 7.30570 7.57037 7.72389 7.78384 7.98032 8.38291 8.41275 9.03622 9.61522 11.10741 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.005221 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.228232 B = 5362.022611 C = 6187.686899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.007 3.993 3 C -0.220 4.220 4 C -0.015 4.015 5 C 0.137 3.863 6 N -0.683 5.683 7 C 0.082 3.918 8 H 0.043 0.957 9 C -0.137 4.137 10 C -0.115 4.115 11 C 0.019 3.981 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 O 0.101 5.899 21 N -0.367 5.367 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.169 0.831 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.358 0.642 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.015 0.985 35 H 0.013 0.987 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.891 8.396 -8.764 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.151 4.151 3 C -0.242 4.242 4 C -0.079 4.079 5 C 0.007 3.993 6 N -0.319 5.319 7 C -0.027 4.027 8 H 0.061 0.939 9 C -0.195 4.195 10 C -0.153 4.153 11 C -0.018 4.018 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 O 0.035 5.965 21 N -0.072 5.072 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.187 0.813 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.181 0.819 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.452 7.435 -8.715 16.920 hybrid contribution 1.013 -0.184 0.654 1.219 sum -11.439 7.252 -8.062 15.762 Atomic orbital electron populations 1.20123 0.86202 1.03405 1.03269 1.23600 0.98928 0.89104 1.03509 1.22336 0.91038 1.00880 1.09993 1.24497 0.98503 0.83403 1.01540 1.20412 0.88726 0.97250 0.92940 1.60695 1.32914 1.28039 1.10254 1.21659 0.88359 0.93250 0.99388 0.93899 1.21810 1.00943 0.95591 1.01187 1.21840 0.98500 1.00743 0.94171 1.19146 0.96195 0.89329 0.97164 1.21216 1.36937 0.94659 1.03125 0.92654 1.25023 0.96153 0.96377 0.96835 1.69957 1.46852 1.01330 1.35199 0.86603 0.79526 0.77915 0.84021 1.20654 1.21251 1.19883 1.84850 1.21445 1.23012 1.67194 1.73855 0.89414 1.24261 1.19681 0.90280 0.90227 0.90800 0.81307 0.88158 0.92684 0.81931 0.92247 0.92754 0.93732 0.92439 0.92364 0.96664 0.96822 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.47 36.01 0.38 -0.29 16 2 C 0.01 0.10 7.33 -82.10 -0.60 -0.50 16 3 C -0.22 -2.78 11.06 -39.38 -0.44 -3.22 16 4 C -0.02 -0.22 7.00 -35.30 -0.25 -0.47 16 5 C 0.14 1.82 6.05 -4.97 -0.03 1.79 16 6 N -0.68 -10.89 6.30 -107.98 -0.68 -11.57 16 7 C 0.08 1.33 2.65 -67.71 -0.18 1.15 16 8 H 0.04 0.70 7.80 -51.93 -0.41 0.30 16 9 C -0.14 -1.82 9.41 37.16 0.35 -1.47 16 10 C -0.11 -2.27 4.74 -26.73 -0.13 -2.40 16 11 C 0.02 0.47 4.80 -27.88 -0.13 0.34 16 12 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 16 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 20 O 0.10 1.69 11.20 17.19 0.19 1.88 16 21 N -0.37 -6.02 12.07 33.42 0.40 -5.62 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 26 H 0.10 1.10 7.43 -51.93 -0.39 0.71 16 27 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 28 H 0.36 6.66 6.46 -39.29 -0.25 6.40 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.51 7.45 -51.92 -0.39 0.12 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.40 6.43 -51.93 -0.33 0.07 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -30.92 304.67 -6.75 -37.67 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.53 Total: 0.97 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.44 Total: -18.50 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.46 Total: -43.34 kcal Atomic # 8 Polarization: 1.69 SS G_CDS: 0.19 Total: 1.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.92 -6.75 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.889 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds