Wall clock time and date at job start Sun Mar 29 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41379 * 126.80355 * 2 1 4 4 C 1.35452 * 103.98270 * 180.09074 * 3 2 1 5 5 C 1.50699 * 126.77555 * 179.90830 * 4 3 2 6 6 N 1.46906 * 109.46990 * 89.71064 * 5 4 3 7 7 C 1.46902 * 110.99573 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47515 * 325.00070 * 7 6 5 9 9 C 1.52999 * 109.47197 * 85.00442 * 7 6 5 10 10 C 1.53007 * 109.46831 * 204.99716 * 7 6 5 11 11 C 1.53000 * 109.46772 * 65.00357 * 10 7 6 12 12 C 1.50699 * 109.46847 * 180.02562 * 11 10 7 13 13 H 1.08001 * 120.00317 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99792 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99988 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99749 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47527 * 89.99800 * 16 14 12 18 18 H 1.48502 * 109.47235 * 209.99676 * 16 14 12 19 19 H 1.48497 * 109.47235 * 329.99505 * 16 14 12 20 20 O 1.34037 * 106.44603 * 359.64553 * 4 3 2 21 21 N 1.20915 * 111.57071 * 0.24161 * 20 4 3 22 22 H 1.09004 * 109.47378 * 270.29713 * 1 2 3 23 23 H 1.09006 * 109.46934 * 30.29547 * 1 2 3 24 24 H 1.08996 * 109.47139 * 150.28978 * 1 2 3 25 25 H 1.07995 * 128.00471 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47064 * 329.71341 * 5 4 3 27 27 H 1.09000 * 109.47099 * 209.71067 * 5 4 3 28 28 H 1.00896 * 111.00309 * 56.04484 * 6 5 4 29 29 H 1.08999 * 109.47708 * 59.99506 * 9 7 6 30 30 H 1.09000 * 109.47499 * 180.02562 * 9 7 6 31 31 H 1.09011 * 109.46887 * 299.99666 * 9 7 6 32 32 H 1.09003 * 109.47093 * 185.00164 * 10 7 6 33 33 H 1.08994 * 109.46960 * 305.00224 * 10 7 6 34 34 H 1.09003 * 109.47155 * 299.99770 * 11 10 7 35 35 H 1.09000 * 109.47401 * 59.99743 * 11 10 7 36 36 H 0.97007 * 119.99836 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0021 5 6 4.9022 1.3693 -0.0049 6 7 5.3236 1.6239 1.3792 7 6 6.5898 2.3678 1.4155 8 1 7.2214 2.0510 0.5856 9 6 6.3046 3.8662 1.2962 10 6 7.3073 2.0890 2.7378 11 6 7.7033 0.6125 2.8017 12 6 8.4095 0.3378 4.1043 13 1 8.5610 1.1364 4.8154 14 6 8.8630 -0.9331 4.3879 15 7 8.6789 -1.9055 3.5219 16 14 9.7376 -1.2738 6.0029 17 1 8.7419 -1.6681 7.0316 18 1 10.7159 -2.3749 5.8134 19 1 10.4505 -0.0494 6.4477 20 8 3.4537 -0.7254 0.0048 21 7 2.2868 -1.0424 0.0058 22 1 -0.3634 0.0053 1.0277 23 1 -0.3633 0.8874 -0.5184 24 1 -0.3633 -0.8925 -0.5093 25 1 2.0710 2.1742 0.0004 26 1 4.7655 2.3183 -0.5235 27 1 5.6663 0.7831 -0.5154 28 1 5.3948 0.7625 1.8997 29 1 5.6731 4.1832 2.1261 30 1 7.2441 4.4182 1.3227 31 1 5.7934 4.0649 0.3541 32 1 8.2019 2.7083 2.8034 33 1 6.6417 2.3229 3.5687 34 1 6.8087 -0.0068 2.7361 35 1 8.3689 0.3786 1.9707 36 1 8.9976 -2.7996 3.7216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:20 Heat of formation + Delta-G solvation = 19.291236 kcal Electronic energy + Delta-G solvation = -16592.609696 eV Core-core repulsion = 13885.536447 eV Total energy + Delta-G solvation = -2707.073249 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.86778 -38.75661 -35.74910 -35.48714 -34.21673 -31.90165 -30.48768 -29.54393 -27.22596 -26.13092 -24.00134 -23.20026 -21.20411 -20.90993 -18.60476 -18.58468 -18.12184 -16.80066 -16.55161 -16.42633 -15.64366 -14.67100 -14.43799 -14.29663 -14.23929 -14.14143 -13.89490 -13.68916 -13.33163 -13.07556 -13.04801 -12.84307 -12.50080 -12.34393 -12.06420 -11.85762 -11.58175 -11.31311 -10.96747 -10.94311 -10.55240 -10.42318 -9.43774 -8.20443 -6.31174 0.45429 1.30444 1.39241 1.40253 1.51278 2.14519 2.40461 3.12803 3.30827 3.33709 3.50962 4.03284 4.11774 4.19244 4.38661 4.40483 4.50859 4.58915 4.66558 4.71316 4.81004 4.93899 4.96118 5.02702 5.07520 5.11241 5.22942 5.29598 5.48955 5.55316 5.68920 5.84791 6.11084 6.23307 6.26590 6.86226 7.29060 7.38306 8.90829 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.005221 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.228232 B = 5362.022611 C = 6187.686899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.009 3.991 3 C -0.209 4.209 4 C -0.031 4.031 5 C 0.140 3.860 6 N -0.684 5.684 7 C 0.087 3.913 8 H 0.039 0.961 9 C -0.128 4.128 10 C -0.103 4.103 11 C 0.024 3.976 12 C -0.543 4.543 13 H 0.059 0.941 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.262 1.262 20 O 0.063 5.937 21 N -0.405 5.405 22 H 0.089 0.911 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.203 0.797 26 H 0.134 0.866 27 H 0.047 0.953 28 H 0.338 0.662 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.054 0.946 34 H -0.005 1.005 35 H -0.013 1.013 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.783 10.503 -8.601 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.150 4.150 3 C -0.231 4.231 4 C -0.095 4.095 5 C 0.010 3.990 6 N -0.318 5.318 7 C -0.022 4.022 8 H 0.057 0.943 9 C -0.186 4.186 10 C -0.140 4.140 11 C -0.013 4.013 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.186 1.186 20 O 0.002 5.998 21 N -0.115 5.115 22 H 0.107 0.893 23 H 0.128 0.872 24 H 0.094 0.906 25 H 0.220 0.780 26 H 0.152 0.848 27 H 0.066 0.934 28 H 0.157 0.843 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.013 0.987 35 H 0.005 0.995 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.315 9.581 -8.562 18.504 hybrid contribution 1.233 -0.833 0.572 1.595 sum -12.082 8.748 -7.990 16.921 Atomic orbital electron populations 1.20332 0.83291 1.05010 1.04366 1.24379 1.00779 0.88660 1.01181 1.22776 0.89919 1.02149 1.08223 1.24798 0.99595 0.82886 1.02210 1.20546 0.88236 0.98627 0.91556 1.60798 1.32538 1.26836 1.11633 1.21612 0.88173 0.95599 0.96835 0.94261 1.21732 1.01811 0.92597 1.02467 1.21658 0.99051 0.96861 0.96475 1.19035 0.94448 0.92740 0.95097 1.21713 1.37054 0.95024 1.04296 0.92228 1.25958 0.96977 0.96216 1.00606 1.70095 1.48047 1.01776 1.37372 0.85490 0.78367 0.78109 0.79361 1.19995 1.20853 1.18561 1.84801 1.21998 1.24428 1.68574 1.73860 0.89696 1.26018 1.21960 0.89285 0.87239 0.90603 0.78039 0.84792 0.93447 0.84264 0.92359 0.91724 0.91272 0.91946 0.92725 0.98724 0.99470 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.47 71.24 0.75 -0.43 16 2 C 0.01 0.23 7.33 43.58 0.32 0.55 16 3 C -0.21 -4.86 11.06 22.40 0.25 -4.61 16 4 C -0.03 -0.89 7.00 25.04 0.18 -0.71 16 5 C 0.14 3.61 6.05 85.56 0.52 4.13 16 6 N -0.68 -21.55 6.30 -495.55 -3.12 -24.67 16 7 C 0.09 2.72 2.65 44.92 0.12 2.84 16 8 H 0.04 1.26 7.80 -2.39 -0.02 1.24 16 9 C -0.13 -3.01 9.41 71.98 0.68 -2.34 16 10 C -0.10 -4.07 4.74 30.60 0.15 -3.92 16 11 C 0.02 1.25 4.80 29.85 0.14 1.39 16 12 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.00 0.01 5.46 84.66 0.46 0.47 16 15 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 16 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 O 0.06 2.19 11.20 71.68 0.80 2.99 16 21 N -0.40 -13.52 12.07 -49.57 -0.60 -14.12 16 22 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 26 H 0.13 2.52 7.43 -2.39 -0.02 2.51 16 27 H 0.05 1.29 8.06 -2.39 -0.02 1.27 16 28 H 0.34 13.04 6.46 -89.70 -0.58 12.46 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.31 7.45 -2.38 -0.02 1.29 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H -0.01 -0.30 6.43 -2.39 -0.02 -0.32 16 35 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.26 15.29 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -68.68 304.67 3.66 -65.02 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.48 Total: 14.63 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 3.79 Total: -33.44 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -3.43 Total: -96.07 kcal Atomic # 8 Polarization: 2.19 SS G_CDS: 0.80 Total: 2.99 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.68 3.66 -65.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.308 kcal (2) G-P(sol) polarization free energy of solvation -68.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds