Wall clock time and date at job start Sun Mar 29 2020 22:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46974 * 2 1 4 4 C 1.53001 * 109.46732 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46718 * 179.97438 * 4 3 2 6 6 C 1.37097 * 119.99667 * 270.00082 * 5 4 3 7 7 H 1.07994 * 119.99690 * 140.74157 * 6 5 4 8 8 C 1.38948 * 120.00011 * 320.73484 * 6 5 4 9 9 N 1.31407 * 120.00182 * 161.06201 * 8 6 5 10 10 Si 1.86804 * 120.00138 * 341.06231 * 8 6 5 11 11 H 1.48499 * 109.46858 * 95.26339 * 10 8 6 12 12 H 1.48502 * 109.47294 * 215.26129 * 10 8 6 13 13 H 1.48496 * 109.46891 * 335.26521 * 10 8 6 14 14 C 1.34773 * 119.99922 * 90.00224 * 5 4 3 15 15 O 1.21294 * 120.00177 * 354.54429 * 14 5 4 16 16 C 1.50699 * 119.99999 * 174.55748 * 14 5 4 17 17 H 1.09005 * 110.28953 * 38.23102 * 16 14 5 18 18 C 1.54687 * 110.32007 * 275.99690 * 16 14 5 19 19 C 1.54824 * 100.79640 * 217.14139 * 18 16 14 20 20 C 1.51264 * 103.78646 * 23.53348 * 19 18 16 21 21 N 1.27272 * 111.23666 * 344.07532 * 20 19 18 22 22 H 1.08999 * 109.47455 * 59.99867 * 1 2 3 23 23 H 1.09008 * 109.47324 * 299.99843 * 1 2 3 24 24 H 1.09008 * 109.47265 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47237 * 119.99631 * 2 1 3 26 26 H 1.08998 * 109.46859 * 240.00004 * 2 1 3 27 27 H 1.09001 * 109.46837 * 299.99876 * 3 2 1 28 28 H 1.08999 * 109.46872 * 60.00010 * 3 2 1 29 29 H 1.09001 * 109.47137 * 299.99422 * 4 3 2 30 30 H 1.08998 * 109.47200 * 59.99943 * 4 3 2 31 31 H 0.96997 * 120.00436 * 180.02562 * 9 8 6 32 32 H 1.09000 * 111.15320 * 335.03062 * 18 16 14 33 33 H 1.09000 * 111.15121 * 99.25751 * 18 16 14 34 34 H 1.09000 * 110.56516 * 264.95349 * 19 18 16 35 35 H 1.08999 * 110.55906 * 142.10296 * 19 18 16 36 36 H 1.07999 * 124.38208 * 164.04085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2862 3.4697 -1.1889 7 1 4.0272 4.5127 -1.2946 8 6 4.8506 2.7823 -2.2564 9 7 4.7346 3.2546 -3.4771 10 14 5.7744 1.1866 -1.9563 11 1 4.8583 0.0371 -2.1673 12 1 6.9157 1.0900 -2.9014 13 1 6.2834 1.1643 -0.5615 14 6 4.2834 3.4594 1.1656 15 8 3.9890 2.9251 2.2140 16 6 4.9007 4.8342 1.1679 17 1 4.5140 5.4236 0.3364 18 6 6.4419 4.7311 1.0853 19 6 6.8607 5.8982 2.0125 20 6 5.6618 6.0899 2.9146 21 7 4.6316 5.5116 2.4414 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9336 0.9286 0.8892 30 1 3.9329 0.9288 -0.8908 31 1 5.1283 2.7746 -4.2224 32 1 6.7936 3.7750 1.4730 33 1 6.7929 4.8931 0.0662 34 1 7.0504 6.8002 1.4308 35 1 7.7398 5.6263 2.5968 36 1 5.6780 6.6452 3.8408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187363531.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:09 Heat of formation + Delta-G solvation = -14.370750 kcal Electronic energy + Delta-G solvation = -17573.932706 eV Core-core repulsion = 14865.399763 eV Total energy + Delta-G solvation = -2708.532942 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.60839 -37.78566 -35.38595 -34.01584 -31.91389 -30.10422 -29.26809 -27.77526 -24.85007 -23.53625 -21.38180 -20.67070 -19.84923 -18.65012 -16.86797 -16.52523 -15.52511 -15.09710 -14.84447 -14.41963 -14.03164 -13.69445 -13.13759 -12.93095 -12.60918 -12.56201 -12.12715 -11.78743 -11.71269 -11.39991 -11.36106 -11.20244 -10.94856 -10.66547 -10.58843 -10.37198 -10.07503 -9.76759 -9.58816 -9.17226 -9.10281 -8.42009 -7.79674 -6.52146 -4.14833 2.64135 3.00781 3.16712 3.23669 3.66611 4.07357 4.27779 4.77398 4.87743 4.97693 5.24090 5.38637 5.39372 5.46645 5.55197 5.73049 5.81769 5.98607 6.07379 6.12807 6.13738 6.18692 6.26261 6.27184 6.40921 6.41838 6.51532 6.54243 6.70859 6.82680 6.94847 7.35026 7.99969 8.08145 8.20694 8.92970 9.32260 9.67143 10.58275 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.010040 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.764564 B = 2788.209483 C = 3758.638626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.106 3.894 5 N -0.465 5.465 6 C -0.343 4.343 7 H 0.102 0.898 8 C 0.069 3.931 9 N -0.861 5.861 10 Si 0.877 3.123 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.263 1.263 14 C 0.498 3.502 15 O -0.583 6.583 16 C 0.040 3.960 17 H 0.117 0.883 18 C -0.128 4.128 19 C -0.148 4.148 20 C 0.107 3.893 21 N -0.466 5.466 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.275 0.725 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 0.314 5.301 5.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.017 4.017 5 N -0.187 5.187 6 C -0.470 4.470 7 H 0.120 0.880 8 C -0.138 4.138 9 N -0.496 5.496 10 Si 0.705 3.295 11 H -0.200 1.200 12 H -0.215 1.215 13 H -0.187 1.187 14 C 0.286 3.714 15 O -0.466 6.466 16 C -0.072 4.072 17 H 0.134 0.866 18 C -0.168 4.168 19 C -0.188 4.188 20 C -0.108 4.108 21 N -0.171 5.171 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.579 -0.230 5.670 5.704 hybrid contribution 1.325 -0.782 -0.641 1.667 sum 1.904 -1.012 5.029 5.472 Atomic orbital electron populations 1.21739 0.96142 1.00838 1.01791 1.21485 0.95641 0.97516 1.01502 1.21845 0.95969 0.95934 1.02697 1.21606 0.94183 0.85197 1.00668 1.43705 1.57449 1.11946 1.05553 1.19031 1.42344 0.98194 0.87436 0.88045 1.25338 0.95612 0.98110 0.94748 1.69730 1.41245 1.40221 0.98447 0.86926 0.79964 0.83505 0.79101 1.20013 1.21531 1.18701 1.19928 0.80699 0.87272 0.83484 1.90542 1.55612 1.68547 1.31917 1.22702 0.95337 0.95687 0.93449 0.86587 1.22829 0.94416 0.98416 1.01121 1.22537 0.99214 0.99365 0.97654 1.26589 0.90911 0.95263 0.98036 1.72645 1.30653 1.05910 1.07927 0.92761 0.92888 0.93301 0.92338 0.92340 0.91201 0.91858 0.91670 0.91977 0.91454 0.91022 0.88950 0.89558 0.90208 0.81576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.13 -2.55 5.54 -26.73 -0.15 -2.70 16 4 C 0.11 2.42 4.14 -4.04 -0.02 2.40 16 5 N -0.47 -11.43 2.16 -114.81 -0.25 -11.68 16 6 C -0.34 -8.81 9.00 -14.93 -0.13 -8.94 16 7 H 0.10 2.74 6.83 -52.49 -0.36 2.38 16 8 C 0.07 1.80 5.35 -17.47 -0.09 1.70 16 9 N -0.86 -23.29 13.96 55.50 0.77 -22.52 16 10 Si 0.88 20.32 24.88 -169.99 -4.23 16.09 16 11 H -0.27 -6.13 6.72 56.52 0.38 -5.75 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.26 -6.18 7.11 56.52 0.40 -5.77 16 14 C 0.50 12.22 6.80 -10.99 -0.07 12.15 16 15 O -0.58 -15.64 16.24 5.55 0.09 -15.55 16 16 C 0.04 0.85 3.22 -68.07 -0.22 0.63 16 17 H 0.12 2.50 6.59 -51.93 -0.34 2.16 16 18 C -0.13 -2.30 6.78 -24.88 -0.17 -2.47 16 19 C -0.15 -2.01 6.90 -26.65 -0.18 -2.19 16 20 C 0.11 1.59 12.07 -13.89 -0.17 1.42 16 21 N -0.47 -9.23 10.63 -52.30 -0.56 -9.79 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 24 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.48 7.51 -51.93 -0.39 1.09 16 30 H 0.06 1.43 3.23 -51.93 -0.17 1.26 16 31 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.07 1.37 7.90 -51.93 -0.41 0.95 16 33 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 294.29 15.07 4.43 4.43 Total: -1.00 -30.54 294.29 -6.21 -36.74 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.48 Total: 4.20 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.00 Total: -1.92 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.03 Total: -43.99 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.23 Total: 16.09 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.54 -6.21 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187363531.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.372 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds