Wall clock time and date at job start Sun Mar 29 2020 22:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46974 * 2 1 4 4 C 1.53001 * 109.46732 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46718 * 179.97438 * 4 3 2 6 6 C 1.37097 * 119.99667 * 270.00082 * 5 4 3 7 7 H 1.07994 * 119.99690 * 140.74157 * 6 5 4 8 8 C 1.38948 * 120.00011 * 320.73484 * 6 5 4 9 9 N 1.31407 * 120.00182 * 161.06201 * 8 6 5 10 10 Si 1.86804 * 120.00138 * 341.06231 * 8 6 5 11 11 H 1.48499 * 109.46858 * 95.26339 * 10 8 6 12 12 H 1.48502 * 109.47294 * 215.26129 * 10 8 6 13 13 H 1.48496 * 109.46891 * 335.26521 * 10 8 6 14 14 C 1.34773 * 119.99922 * 90.00224 * 5 4 3 15 15 O 1.21294 * 120.00177 * 354.54429 * 14 5 4 16 16 C 1.50699 * 119.99999 * 174.55748 * 14 5 4 17 17 H 1.09005 * 110.28953 * 38.23102 * 16 14 5 18 18 C 1.54687 * 110.32007 * 275.99690 * 16 14 5 19 19 C 1.54824 * 100.79640 * 217.14139 * 18 16 14 20 20 C 1.51264 * 103.78646 * 23.53348 * 19 18 16 21 21 N 1.27272 * 111.23666 * 344.07532 * 20 19 18 22 22 H 1.08999 * 109.47455 * 59.99867 * 1 2 3 23 23 H 1.09008 * 109.47324 * 299.99843 * 1 2 3 24 24 H 1.09008 * 109.47265 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47237 * 119.99631 * 2 1 3 26 26 H 1.08998 * 109.46859 * 240.00004 * 2 1 3 27 27 H 1.09001 * 109.46837 * 299.99876 * 3 2 1 28 28 H 1.08999 * 109.46872 * 60.00010 * 3 2 1 29 29 H 1.09001 * 109.47137 * 299.99422 * 4 3 2 30 30 H 1.08998 * 109.47200 * 59.99943 * 4 3 2 31 31 H 0.96997 * 120.00436 * 180.02562 * 9 8 6 32 32 H 1.09000 * 111.15320 * 335.03062 * 18 16 14 33 33 H 1.09000 * 111.15121 * 99.25751 * 18 16 14 34 34 H 1.09000 * 110.56516 * 264.95349 * 19 18 16 35 35 H 1.08999 * 110.55906 * 142.10296 * 19 18 16 36 36 H 1.07999 * 124.38208 * 164.04085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2862 3.4697 -1.1889 7 1 4.0272 4.5127 -1.2946 8 6 4.8506 2.7823 -2.2564 9 7 4.7346 3.2546 -3.4771 10 14 5.7744 1.1866 -1.9563 11 1 4.8583 0.0371 -2.1673 12 1 6.9157 1.0900 -2.9014 13 1 6.2834 1.1643 -0.5615 14 6 4.2834 3.4594 1.1656 15 8 3.9890 2.9251 2.2140 16 6 4.9007 4.8342 1.1679 17 1 4.5140 5.4236 0.3364 18 6 6.4419 4.7311 1.0853 19 6 6.8607 5.8982 2.0125 20 6 5.6618 6.0899 2.9146 21 7 4.6316 5.5116 2.4414 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9336 0.9286 0.8892 30 1 3.9329 0.9288 -0.8908 31 1 5.1283 2.7746 -4.2224 32 1 6.7936 3.7750 1.4730 33 1 6.7929 4.8931 0.0662 34 1 7.0504 6.8002 1.4308 35 1 7.7398 5.6263 2.5968 36 1 5.6780 6.6452 3.8408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187363531.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:09 Heat of formation + Delta-G solvation = -35.090389 kcal Electronic energy + Delta-G solvation = -17574.831177 eV Core-core repulsion = 14865.399763 eV Total energy + Delta-G solvation = -2709.431413 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29258 -39.37632 -37.21111 -35.66848 -33.89721 -31.54167 -30.69946 -29.25955 -26.84456 -25.08748 -22.84344 -22.16659 -21.38272 -20.37260 -18.62776 -18.38678 -17.26088 -16.65368 -16.31933 -16.10181 -15.74982 -15.25916 -14.73597 -14.62916 -14.18226 -14.10215 -13.69545 -13.41205 -13.12884 -13.08666 -12.97638 -12.57536 -12.53236 -12.21554 -12.16086 -11.96169 -11.81477 -11.51781 -11.16571 -10.94726 -10.49152 -10.23476 -9.77542 -8.55115 -6.20730 1.14469 1.26507 1.37359 1.40401 1.78859 2.13195 2.52354 2.90396 3.44336 3.68171 3.84815 3.97351 3.99721 4.05699 4.18830 4.23946 4.28547 4.42302 4.53287 4.70231 4.73800 4.83618 4.87656 4.90046 5.00723 5.05592 5.12382 5.17809 5.29417 5.36695 5.44365 5.52018 5.97678 6.20129 6.81402 6.91267 7.34179 7.71871 8.58648 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.010040 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.764564 B = 2788.209483 C = 3758.638626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.117 4.117 4 C 0.099 3.901 5 N -0.473 5.473 6 C -0.340 4.340 7 H 0.078 0.922 8 C 0.038 3.962 9 N -0.893 5.893 10 Si 0.924 3.076 11 H -0.258 1.258 12 H -0.279 1.279 13 H -0.271 1.271 14 C 0.488 3.512 15 O -0.611 6.611 16 C 0.041 3.959 17 H 0.097 0.903 18 C -0.131 4.131 19 C -0.138 4.138 20 C 0.138 3.862 21 N -0.528 5.528 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.281 0.719 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 0.074 6.243 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.156 4.156 4 C -0.023 4.023 5 N -0.194 5.194 6 C -0.467 4.467 7 H 0.096 0.904 8 C -0.167 4.167 9 N -0.530 5.530 10 Si 0.750 3.250 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.195 1.195 14 C 0.277 3.723 15 O -0.497 6.497 16 C -0.071 4.071 17 H 0.115 0.885 18 C -0.171 4.171 19 C -0.177 4.177 20 C -0.075 4.075 21 N -0.235 5.235 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.597 -0.467 6.602 6.808 hybrid contribution 1.036 -0.614 -0.870 1.485 sum 2.633 -1.080 5.732 6.399 Atomic orbital electron populations 1.21714 0.94088 1.02557 1.01783 1.21486 0.97454 0.94636 1.02217 1.21756 0.94259 0.98459 1.01103 1.21751 0.95807 0.84383 1.00386 1.43851 1.57649 1.12591 1.05322 1.18824 1.42465 0.97456 0.87969 0.90435 1.25793 0.95893 1.00701 0.94301 1.69784 1.42222 1.41800 0.99175 0.86167 0.79336 0.80944 0.78531 1.18392 1.20565 1.19539 1.20649 0.80058 0.88659 0.82896 1.90493 1.56809 1.69687 1.32681 1.22589 0.96890 0.93341 0.94330 0.88529 1.22848 0.92287 0.99753 1.02185 1.22585 0.99717 0.98397 0.97007 1.27458 0.89800 0.91907 0.98344 1.72711 1.33000 1.09548 1.08275 0.92849 0.92903 0.90694 0.91470 0.91737 0.92667 0.93442 0.91917 0.91995 0.90857 0.92630 0.89297 0.86875 0.86842 0.76847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.12 -3.84 5.93 30.60 0.18 -3.66 16 3 C -0.12 -4.82 5.54 30.60 0.17 -4.65 16 4 C 0.10 4.57 4.14 86.38 0.36 4.93 16 5 N -0.47 -23.92 2.16 -635.53 -1.37 -25.29 16 6 C -0.34 -18.02 9.00 84.04 0.76 -17.27 16 7 H 0.08 4.42 6.83 -2.91 -0.02 4.40 16 8 C 0.04 1.99 5.35 84.93 0.45 2.45 16 9 N -0.89 -48.82 13.96 21.66 0.30 -48.52 16 10 Si 0.92 41.58 24.88 68.60 1.71 43.28 16 11 H -0.26 -10.93 6.72 99.48 0.67 -10.26 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 14 C 0.49 24.68 6.80 87.66 0.60 25.27 16 15 O -0.61 -33.63 16.24 -3.07 -0.05 -33.68 16 16 C 0.04 1.76 3.22 44.78 0.14 1.90 16 17 H 0.10 4.39 6.59 -2.38 -0.02 4.37 16 18 C -0.13 -4.64 6.78 31.79 0.22 -4.42 16 19 C -0.14 -3.27 6.90 30.65 0.21 -3.06 16 20 C 0.14 3.67 12.07 88.95 1.07 4.74 16 21 N -0.53 -20.65 10.63 -317.95 -3.38 -24.03 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 24 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.89 7.51 -2.39 -0.02 2.87 16 30 H 0.06 2.83 3.23 -2.39 -0.01 2.82 16 31 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.05 2.11 7.90 -2.39 -0.02 2.09 16 33 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.22 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -68.07 294.29 3.10 -64.97 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 1.01 Total: 20.15 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 4.87 Total: 3.12 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -4.45 Total: -97.84 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.05 Total: -33.68 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.71 Total: 43.28 kcal Total: -68.07 3.10 -64.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187363531.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.881 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds