Wall clock time and date at job start Sun Mar 29 2020 22:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46669 * 2 1 4 4 C 1.52996 * 109.46962 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47303 * 180.02562 * 4 3 2 6 6 C 1.37094 * 119.99931 * 269.99961 * 5 4 3 7 7 H 1.08010 * 119.99908 * 141.82336 * 6 5 4 8 8 C 1.38946 * 120.00421 * 321.82375 * 6 5 4 9 9 N 1.31420 * 119.99498 * 339.97476 * 8 6 5 10 10 Si 1.86797 * 120.00423 * 159.97240 * 8 6 5 11 11 H 1.48499 * 109.47426 * 90.00267 * 10 8 6 12 12 H 1.48502 * 109.47017 * 210.00311 * 10 8 6 13 13 H 1.48500 * 109.47220 * 330.00016 * 10 8 6 14 14 C 1.34776 * 120.00143 * 89.99908 * 5 4 3 15 15 O 1.21293 * 120.00335 * 4.98057 * 14 5 4 16 16 C 1.50708 * 120.00076 * 184.98044 * 14 5 4 17 17 H 1.08995 * 110.28564 * 324.02201 * 16 14 5 18 18 C 1.54687 * 110.32203 * 86.15019 * 16 14 5 19 19 C 1.54823 * 100.79607 * 142.85518 * 18 16 14 20 20 C 1.51264 * 103.78714 * 336.47044 * 19 18 16 21 21 N 1.27271 * 111.23874 * 16.15266 * 20 19 18 22 22 H 1.09002 * 109.47447 * 299.99538 * 1 2 3 23 23 H 1.08996 * 109.47261 * 60.00060 * 1 2 3 24 24 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47173 * 240.00097 * 2 1 3 26 26 H 1.08996 * 109.47261 * 119.99940 * 2 1 3 27 27 H 1.09002 * 109.46809 * 60.00071 * 3 2 1 28 28 H 1.08996 * 109.47230 * 299.99959 * 3 2 1 29 29 H 1.08997 * 109.47077 * 59.99976 * 4 3 2 30 30 H 1.09003 * 109.47271 * 300.00333 * 4 3 2 31 31 H 0.96999 * 119.99306 * 185.07331 * 9 8 6 32 32 H 1.09000 * 111.15121 * 24.97230 * 18 16 14 33 33 H 1.08999 * 111.18744 * 260.75728 * 18 16 14 34 34 H 1.09000 * 110.56701 * 217.89335 * 19 18 16 35 35 H 1.09005 * 110.68589 * 95.10496 * 19 18 16 36 36 H 1.07996 * 124.38248 * 195.88267 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2861 3.4708 -1.1870 7 1 4.0433 4.5185 -1.2863 8 6 4.8296 2.7788 -2.2623 9 7 5.4813 1.6557 -2.0592 10 14 4.6341 3.4445 -3.9966 11 1 5.7758 4.3390 -4.3152 12 1 4.6064 2.3149 -4.9603 13 1 3.3645 4.2088 -4.0933 14 6 4.2833 3.4585 1.1674 15 8 4.1687 2.8590 2.2156 16 6 4.6773 4.9132 1.1706 17 1 5.3207 5.1322 0.3184 18 6 3.4181 5.8110 1.1380 19 6 3.8645 6.9702 2.0621 20 6 4.9424 6.3501 2.9233 21 7 5.3600 5.2568 2.4232 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9328 0.9290 -0.8908 30 1 3.9336 0.9286 0.8891 31 1 5.9235 1.2110 -2.7991 32 1 2.5533 5.2906 1.5496 33 1 3.2152 6.1685 0.1285 34 1 3.0320 7.3116 2.6775 35 1 4.2698 7.7953 1.4764 36 1 5.3131 6.7816 3.8413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187363532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:12 Heat of formation + Delta-G solvation = -22.243146 kcal Electronic energy + Delta-G solvation = -17501.840998 eV Core-core repulsion = 14792.966683 eV Total energy + Delta-G solvation = -2708.874315 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.44835 -37.54898 -35.17113 -33.91841 -31.50736 -30.05785 -29.13120 -27.63673 -24.91217 -23.12187 -21.29641 -20.49560 -19.62606 -18.74889 -16.81209 -16.23469 -15.28296 -14.72819 -14.71909 -14.37978 -14.00350 -13.73157 -13.04559 -12.74042 -12.36235 -12.19950 -11.98830 -11.73628 -11.55421 -11.32501 -11.20763 -11.11685 -10.83671 -10.55810 -10.48594 -10.34412 -10.23671 -9.71854 -9.52014 -9.12165 -9.07214 -8.23562 -7.43450 -6.37683 -4.08321 2.70679 3.07650 3.18260 3.21033 3.82798 4.09226 4.61711 4.83186 4.91054 5.02974 5.29080 5.40235 5.48744 5.55296 5.66414 5.78347 5.96996 6.06627 6.10856 6.24610 6.25772 6.29193 6.38855 6.44380 6.54765 6.61971 6.74236 6.75499 6.83521 7.14650 7.34932 7.50721 7.97916 8.13408 8.37354 9.06900 9.54253 9.97703 10.64224 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.010193 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.550104 B = 2746.243303 C = 3870.702930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.126 4.126 4 C 0.114 3.886 5 N -0.439 5.439 6 C -0.344 4.344 7 H 0.087 0.913 8 C 0.046 3.954 9 N -0.858 5.858 10 Si 0.912 3.088 11 H -0.277 1.277 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.489 3.511 15 O -0.592 6.592 16 C 0.037 3.963 17 H 0.117 0.883 18 C -0.133 4.133 19 C -0.146 4.146 20 C 0.102 3.898 21 N -0.459 5.459 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.271 0.729 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 5.746 1.315 8.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.009 4.009 5 N -0.157 5.157 6 C -0.472 4.472 7 H 0.104 0.896 8 C -0.160 4.160 9 N -0.494 5.494 10 Si 0.739 3.261 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.277 3.723 15 O -0.476 6.476 16 C -0.076 4.076 17 H 0.135 0.865 18 C -0.173 4.173 19 C -0.186 4.186 20 C -0.114 4.114 21 N -0.164 5.164 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.994 4.367 1.730 6.856 hybrid contribution -0.621 0.871 -1.386 1.751 sum -5.615 5.238 0.344 7.687 Atomic orbital electron populations 1.21756 0.96644 1.00682 1.01430 1.21434 0.94951 0.97759 1.01661 1.21900 0.97981 0.95456 1.01150 1.21405 0.91005 0.84966 1.03549 1.43351 1.56145 1.12001 1.04224 1.19338 1.43317 0.96166 0.88363 0.89586 1.25394 0.94395 0.96028 1.00203 1.69864 1.28961 1.17865 1.32678 0.86167 0.79044 0.78654 0.82271 1.20235 1.20653 1.19284 1.19830 0.80321 0.87827 0.84339 1.90519 1.56848 1.67975 1.32263 1.22761 0.95136 0.95596 0.94091 0.86502 1.22891 0.98331 0.95482 1.00572 1.22505 0.98918 0.99245 0.97917 1.26567 0.94209 0.92477 0.98142 1.72632 1.23580 1.13086 1.07112 0.93145 0.93032 0.93406 0.92179 0.92405 0.93299 0.92220 0.87752 0.92804 0.91904 0.90891 0.89686 0.90297 0.89746 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.06 5.93 -26.73 -0.16 -2.22 16 3 C -0.13 -2.61 5.54 -26.73 -0.15 -2.76 16 4 C 0.11 2.80 5.04 -4.05 -0.02 2.78 16 5 N -0.44 -11.32 2.52 -114.81 -0.29 -11.61 16 6 C -0.34 -8.68 8.25 -14.94 -0.12 -8.81 16 7 H 0.09 2.04 6.73 -52.48 -0.35 1.69 16 8 C 0.05 1.17 4.99 -17.47 -0.09 1.08 16 9 N -0.86 -22.83 11.42 55.50 0.63 -22.20 16 10 Si 0.91 19.21 29.60 -169.99 -5.03 14.18 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 14 C 0.49 12.68 6.80 -10.98 -0.07 12.61 16 15 O -0.59 -16.99 16.18 5.55 0.09 -16.90 16 16 C 0.04 0.79 3.05 -68.06 -0.21 0.59 16 17 H 0.12 2.61 7.01 -51.93 -0.36 2.24 16 18 C -0.13 -2.31 6.59 -24.88 -0.16 -2.48 16 19 C -0.15 -1.97 6.90 -26.65 -0.18 -2.15 16 20 C 0.10 1.56 12.07 -13.89 -0.17 1.39 16 21 N -0.46 -9.55 10.66 -52.30 -0.56 -10.11 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.10 2.69 5.51 -51.93 -0.29 2.41 16 30 H 0.05 1.40 7.36 -51.93 -0.38 1.01 16 31 H 0.27 6.78 8.32 -40.82 -0.34 6.44 16 32 H 0.07 1.34 7.90 -51.93 -0.41 0.93 16 33 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -31.25 298.82 -7.19 -38.44 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.57 Total: 5.42 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.97 Total: -1.73 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.21 Total: -43.91 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.09 Total: -16.90 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.25 -7.19 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187363532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.193 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds