Wall clock time and date at job start Sun Mar 29 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46669 * 2 1 4 4 C 1.52996 * 109.46962 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47303 * 180.02562 * 4 3 2 6 6 C 1.37094 * 119.99931 * 269.99961 * 5 4 3 7 7 H 1.08010 * 119.99908 * 141.82336 * 6 5 4 8 8 C 1.38946 * 120.00421 * 321.82375 * 6 5 4 9 9 N 1.31420 * 119.99498 * 339.97476 * 8 6 5 10 10 Si 1.86797 * 120.00423 * 159.97240 * 8 6 5 11 11 H 1.48499 * 109.47426 * 90.00267 * 10 8 6 12 12 H 1.48502 * 109.47017 * 210.00311 * 10 8 6 13 13 H 1.48500 * 109.47220 * 330.00016 * 10 8 6 14 14 C 1.34776 * 120.00143 * 89.99908 * 5 4 3 15 15 O 1.21293 * 120.00335 * 4.98057 * 14 5 4 16 16 C 1.50708 * 120.00076 * 184.98044 * 14 5 4 17 17 H 1.08995 * 110.28564 * 324.02201 * 16 14 5 18 18 C 1.54687 * 110.32203 * 86.15019 * 16 14 5 19 19 C 1.54823 * 100.79607 * 142.85518 * 18 16 14 20 20 C 1.51264 * 103.78714 * 336.47044 * 19 18 16 21 21 N 1.27271 * 111.23874 * 16.15266 * 20 19 18 22 22 H 1.09002 * 109.47447 * 299.99538 * 1 2 3 23 23 H 1.08996 * 109.47261 * 60.00060 * 1 2 3 24 24 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47173 * 240.00097 * 2 1 3 26 26 H 1.08996 * 109.47261 * 119.99940 * 2 1 3 27 27 H 1.09002 * 109.46809 * 60.00071 * 3 2 1 28 28 H 1.08996 * 109.47230 * 299.99959 * 3 2 1 29 29 H 1.08997 * 109.47077 * 59.99976 * 4 3 2 30 30 H 1.09003 * 109.47271 * 300.00333 * 4 3 2 31 31 H 0.96999 * 119.99306 * 185.07331 * 9 8 6 32 32 H 1.09000 * 111.15121 * 24.97230 * 18 16 14 33 33 H 1.08999 * 111.18744 * 260.75728 * 18 16 14 34 34 H 1.09000 * 110.56701 * 217.89335 * 19 18 16 35 35 H 1.09005 * 110.68589 * 95.10496 * 19 18 16 36 36 H 1.07996 * 124.38248 * 195.88267 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2861 3.4708 -1.1870 7 1 4.0433 4.5185 -1.2863 8 6 4.8296 2.7788 -2.2623 9 7 5.4813 1.6557 -2.0592 10 14 4.6341 3.4445 -3.9966 11 1 5.7758 4.3390 -4.3152 12 1 4.6064 2.3149 -4.9603 13 1 3.3645 4.2088 -4.0933 14 6 4.2833 3.4585 1.1674 15 8 4.1687 2.8590 2.2156 16 6 4.6773 4.9132 1.1706 17 1 5.3207 5.1322 0.3184 18 6 3.4181 5.8110 1.1380 19 6 3.8645 6.9702 2.0621 20 6 4.9424 6.3501 2.9233 21 7 5.3600 5.2568 2.4232 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9328 0.9290 -0.8908 30 1 3.9336 0.9286 0.8891 31 1 5.9235 1.2110 -2.7991 32 1 2.5533 5.2906 1.5496 33 1 3.2152 6.1685 0.1285 34 1 3.0320 7.3116 2.6775 35 1 4.2698 7.7953 1.4764 36 1 5.3131 6.7816 3.8413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187363532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:11 Heat of formation + Delta-G solvation = -43.196678 kcal Electronic energy + Delta-G solvation = -17502.749611 eV Core-core repulsion = 14792.966683 eV Total energy + Delta-G solvation = -2709.782928 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12495 -39.22066 -37.06099 -35.58906 -33.46731 -31.49298 -30.60372 -29.15463 -26.85828 -24.72944 -22.75802 -22.03155 -21.27168 -20.45089 -18.57666 -18.06646 -16.89577 -16.38598 -16.26777 -16.13090 -15.60553 -15.37144 -14.54482 -14.30340 -13.92141 -13.83299 -13.56188 -13.21317 -13.05220 -12.98618 -12.78561 -12.57345 -12.44713 -12.16553 -12.06366 -12.00024 -11.84870 -11.46836 -11.07282 -10.97030 -10.45150 -10.12333 -9.44294 -8.31591 -6.09611 1.39351 1.43610 1.47214 1.58323 1.94164 2.30446 2.91067 3.02150 3.48354 3.70944 3.97686 4.04602 4.07580 4.18180 4.26744 4.34230 4.45926 4.64502 4.77128 4.79134 4.83659 4.86371 4.96177 5.03509 5.04842 5.14292 5.14505 5.32679 5.39485 5.42219 5.51226 5.56998 6.02186 6.39682 6.87077 7.09346 7.56314 8.00579 8.71910 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.010193 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.550104 B = 2746.243303 C = 3870.702930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.114 3.886 5 N -0.448 5.448 6 C -0.358 4.358 7 H 0.100 0.900 8 C 0.002 3.998 9 N -0.896 5.896 10 Si 0.986 3.014 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.255 1.255 14 C 0.470 3.530 15 O -0.634 6.634 16 C 0.040 3.960 17 H 0.099 0.901 18 C -0.132 4.132 19 C -0.136 4.136 20 C 0.132 3.868 21 N -0.533 5.533 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.025 0.975 31 H 0.273 0.727 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 8.036 0.676 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.150 4.150 4 C -0.010 4.010 5 N -0.166 5.166 6 C -0.485 4.485 7 H 0.118 0.882 8 C -0.201 4.201 9 N -0.533 5.533 10 Si 0.809 3.191 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.178 1.178 14 C 0.259 3.741 15 O -0.522 6.522 16 C -0.072 4.072 17 H 0.117 0.883 18 C -0.171 4.171 19 C -0.175 4.175 20 C -0.081 4.081 21 N -0.240 5.240 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.346 6.679 1.087 9.276 hybrid contribution -0.151 0.183 -1.090 1.116 sum -6.497 6.862 -0.004 9.449 Atomic orbital electron populations 1.21703 0.93808 1.02452 1.01876 1.21424 0.97379 0.95051 1.01652 1.21744 0.94959 0.97889 1.00364 1.21382 0.93602 0.84700 1.01276 1.43668 1.55889 1.12240 1.04817 1.19739 1.43575 0.96931 0.88258 0.88248 1.26334 0.93502 0.96140 1.04141 1.69994 1.29952 1.19395 1.33989 0.85047 0.79517 0.77967 0.76595 1.19620 1.20730 1.17845 1.20755 0.79698 0.89966 0.83684 1.90456 1.58765 1.69433 1.33518 1.22596 0.96813 0.93149 0.94689 0.88313 1.22914 0.95733 0.96035 1.02435 1.22565 0.99382 0.98145 0.97408 1.27453 0.92252 0.90209 0.98183 1.72689 1.26477 1.16737 1.08084 0.92951 0.92351 0.90990 0.91965 0.92713 0.94525 0.92234 0.89141 0.95655 0.91737 0.92651 0.88391 0.86946 0.86567 0.77258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.12 -4.03 5.93 30.60 0.18 -3.85 16 3 C -0.11 -4.73 5.54 30.59 0.17 -4.56 16 4 C 0.11 5.90 5.04 86.38 0.44 6.34 16 5 N -0.45 -24.13 2.52 -635.54 -1.60 -25.73 16 6 C -0.36 -18.39 8.25 84.04 0.69 -17.69 16 7 H 0.10 4.72 6.73 -2.91 -0.02 4.70 16 8 C 0.00 0.09 4.99 84.92 0.42 0.52 16 9 N -0.90 -49.05 11.42 21.66 0.25 -48.80 16 10 Si 0.99 39.07 29.60 68.60 2.03 41.10 16 11 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 12 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 13 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 14 C 0.47 25.45 6.80 87.66 0.60 26.04 16 15 O -0.63 -38.40 16.18 -3.07 -0.05 -38.45 16 16 C 0.04 1.76 3.05 44.78 0.14 1.90 16 17 H 0.10 4.54 7.01 -2.39 -0.02 4.52 16 18 C -0.13 -4.40 6.59 31.79 0.21 -4.19 16 19 C -0.14 -3.12 6.90 30.65 0.21 -2.91 16 20 C 0.13 3.67 12.07 88.95 1.07 4.75 16 21 N -0.53 -22.09 10.66 -317.95 -3.39 -25.48 16 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.09 4.92 5.51 -2.39 -0.01 4.90 16 30 H 0.02 1.40 7.36 -2.39 -0.02 1.39 16 31 H 0.27 13.99 8.32 -92.71 -0.77 13.22 16 32 H 0.05 2.02 7.90 -2.39 -0.02 2.00 16 33 H 0.10 2.95 7.89 -2.39 -0.02 2.93 16 34 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.21 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -72.36 298.82 3.13 -69.23 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 1.05 Total: 24.89 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 4.84 Total: 3.24 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.74 Total: -100.01 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.05 Total: -38.45 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -72.36 3.13 -69.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187363532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.034 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds