Wall clock time and date at job start Sun Mar 29 2020 22:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00340 * 2 1 4 4 N 1.46498 * 109.47273 * 125.00113 * 3 2 1 5 5 C 1.34775 * 120.00050 * 180.02562 * 4 3 2 6 6 O 1.21589 * 120.00167 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00223 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00104 * 185.26413 * 7 5 4 9 9 C 1.50705 * 110.43460 * 297.94420 * 8 7 5 10 10 H 1.07994 * 119.99964 * 122.57614 * 9 8 7 11 11 C 1.37880 * 119.99684 * 302.57980 * 9 8 7 12 12 N 1.31513 * 119.99969 * 355.00005 * 11 9 8 13 13 Si 1.86797 * 119.99686 * 175.00300 * 11 9 8 14 14 H 1.48504 * 109.47327 * 59.99694 * 13 11 9 15 15 H 1.48499 * 109.47041 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47155 * 299.99664 * 13 11 9 17 17 C 1.54889 * 110.48809 * 60.62923 * 8 7 5 18 18 C 1.54885 * 102.74820 * 80.73658 * 17 8 7 19 19 C 1.54272 * 104.19677 * 37.94163 * 18 17 8 20 20 C 1.53866 * 106.59643 * 336.39066 * 19 18 17 21 21 H 1.08000 * 119.99575 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.00199 * 179.97438 * 1 2 3 23 23 H 1.08002 * 120.00476 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46947 * 4.99961 * 3 2 1 25 25 H 1.09001 * 109.47229 * 245.00362 * 3 2 1 26 26 H 0.96999 * 119.99894 * 359.97438 * 4 3 2 27 27 H 0.97000 * 119.99623 * 5.25565 * 7 5 4 28 28 H 0.97005 * 119.99483 * 185.00084 * 12 11 9 29 29 H 1.08997 * 110.75468 * 322.41879 * 17 8 7 30 30 H 1.09005 * 110.75287 * 199.04999 * 17 8 7 31 31 H 1.08996 * 110.48739 * 279.26609 * 18 17 8 32 32 H 1.09007 * 110.48872 * 156.61917 * 18 17 8 33 33 H 1.09003 * 110.03123 * 95.67591 * 19 18 17 34 34 H 1.08998 * 110.02879 * 217.05535 * 19 18 17 35 35 H 1.09002 * 110.03199 * 119.28616 * 20 19 18 36 36 H 1.09008 * 110.02946 * 240.71196 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7784 2.4089 1.3334 6 8 3.7144 3.3582 0.5764 7 7 4.6338 2.4338 2.3745 8 6 5.4024 3.6473 2.6623 9 6 6.3104 3.9814 1.5069 10 1 6.2339 4.9425 1.0203 11 6 7.2389 3.0600 1.0710 12 7 7.4001 1.9297 1.7237 13 14 8.2677 3.4171 -0.4466 14 1 9.0634 4.6514 -0.2261 15 1 9.1842 2.2771 -0.7028 16 1 7.3739 3.6070 -1.6172 17 6 4.4517 4.8313 2.9683 18 6 4.0715 4.5901 4.4502 19 6 5.3739 4.0732 5.0957 20 6 6.2200 3.4739 3.9589 21 1 -0.5399 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 3.0446 0.5747 1.7355 27 1 4.7406 1.6482 2.9334 28 1 8.1021 1.3139 1.4611 29 1 3.5681 4.7917 2.3314 30 1 4.9704 5.7830 2.8525 31 1 3.2848 3.8394 4.5249 32 1 3.7567 5.5221 4.9199 33 1 5.9103 4.8975 5.5658 34 1 5.1450 3.3066 5.8360 35 1 7.1671 4.0072 3.8773 36 1 6.4019 2.4156 4.1469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202579952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:36 Heat of formation + Delta-G solvation = -38.233548 kcal Electronic energy + Delta-G solvation = -17719.577931 eV Core-core repulsion = 15010.010220 eV Total energy + Delta-G solvation = -2709.567711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81469 -38.68017 -36.40749 -34.58392 -33.93614 -32.86073 -29.38379 -29.23297 -26.72696 -25.69148 -22.07076 -21.22004 -20.95426 -20.35992 -18.66417 -18.44317 -17.01642 -16.67257 -16.39247 -15.87806 -15.59419 -15.34322 -14.66369 -14.59448 -14.08392 -13.68547 -13.60518 -13.23368 -12.94475 -12.68231 -12.47883 -12.11935 -11.96495 -11.81649 -11.70049 -11.31904 -11.13249 -11.09465 -10.84361 -10.48925 -10.32303 -9.86255 -9.11411 -8.02988 -6.09073 1.23010 1.34026 1.37564 1.44792 2.37842 2.44557 2.76696 3.25115 3.91412 3.94735 4.14213 4.18197 4.21779 4.30524 4.64347 4.80573 4.84748 5.00624 5.02041 5.04868 5.14353 5.22584 5.31103 5.42261 5.44404 5.64718 5.67119 5.71386 5.77278 5.87219 5.90658 6.29866 6.44012 6.62983 6.88720 7.52929 7.69427 8.21653 8.98451 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.009692 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.010045 B = 2888.222874 C = 3905.997963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.178 4.178 3 C 0.169 3.831 4 N -0.746 5.746 5 C 0.693 3.307 6 O -0.636 6.636 7 N -0.694 5.694 8 C 0.302 3.698 9 C -0.511 4.511 10 H 0.027 0.973 11 C 0.039 3.961 12 N -0.892 5.892 13 Si 0.928 3.072 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.297 1.297 17 C -0.124 4.124 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.089 4.089 21 H 0.099 0.901 22 H 0.127 0.873 23 H 0.125 0.875 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.403 0.597 27 H 0.385 0.615 28 H 0.257 0.743 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 -5.078 4.509 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.197 4.197 3 C 0.045 3.955 4 N -0.404 5.404 5 C 0.393 3.607 6 O -0.518 6.518 7 N -0.345 5.345 8 C 0.217 3.783 9 C -0.550 4.550 10 H 0.045 0.955 11 C -0.162 4.162 12 N -0.530 5.530 13 Si 0.756 3.244 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.224 1.224 17 C -0.163 4.163 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.128 4.128 21 H 0.118 0.882 22 H 0.145 0.855 23 H 0.143 0.857 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.237 0.763 27 H 0.218 0.782 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.803 -4.368 3.819 11.391 hybrid contribution 1.015 -0.435 -0.921 1.438 sum -8.788 -4.803 2.898 10.426 Atomic orbital electron populations 1.24132 0.95092 1.03338 0.96732 1.22910 0.96565 0.96910 1.03268 1.20104 0.90676 0.96467 0.88300 1.45079 1.43192 1.19504 1.32671 1.16254 0.79694 0.82842 0.81872 1.90782 1.73651 1.38357 1.48979 1.45373 1.42268 1.16717 1.30110 1.18533 0.86695 0.80802 0.92250 1.21408 1.17515 0.99821 1.16300 0.95488 1.25313 0.97887 0.95048 0.97992 1.69945 1.32341 1.09827 1.40922 0.86102 0.78649 0.77944 0.81698 1.19613 1.20417 1.22355 1.22731 0.98855 0.98547 0.96194 1.22273 0.97406 1.00570 0.94517 1.22196 0.95750 1.00267 0.97371 1.22031 0.97573 0.99787 0.93409 0.88233 0.85540 0.85707 0.92782 0.93923 0.76260 0.78224 0.93377 0.94121 0.93178 0.92221 0.90990 0.91621 0.90954 0.93900 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 14.32 67.79 0.97 -1.76 16 2 C -0.18 -3.95 9.63 25.65 0.25 -3.70 16 3 C 0.17 5.38 6.11 85.63 0.52 5.90 16 4 N -0.75 -26.74 5.55 -482.29 -2.68 -29.42 16 5 C 0.69 32.42 7.86 179.06 1.41 33.83 16 6 O -0.64 -35.67 14.04 -4.00 -0.06 -35.73 16 7 N -0.69 -31.31 4.45 -436.50 -1.94 -33.25 16 8 C 0.30 14.58 0.32 3.93 0.00 14.58 16 9 C -0.51 -29.22 6.73 25.60 0.17 -29.05 16 10 H 0.03 1.65 7.78 -2.91 -0.02 1.63 16 11 C 0.04 2.17 5.28 84.66 0.45 2.62 16 12 N -0.89 -48.72 11.96 21.45 0.26 -48.47 16 13 Si 0.93 46.43 29.54 68.60 2.03 48.45 16 14 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 16 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 17 C -0.12 -5.54 5.67 31.88 0.18 -5.36 16 18 C -0.11 -3.76 6.79 31.67 0.22 -3.55 16 19 C -0.12 -3.93 6.80 31.32 0.21 -3.72 16 20 C -0.09 -3.83 5.16 31.32 0.16 -3.66 16 21 H 0.10 1.75 7.84 -2.91 -0.02 1.73 16 22 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 23 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 24 H 0.05 1.78 7.79 -2.39 -0.02 1.76 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.40 11.82 8.48 -92.71 -0.79 11.03 16 27 H 0.38 15.70 8.29 -92.71 -0.77 14.94 16 28 H 0.26 13.67 8.32 -92.70 -0.77 12.90 16 29 H 0.04 1.97 6.41 -2.39 -0.02 1.96 16 30 H 0.05 2.27 8.05 -2.38 -0.02 2.25 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.04 2.00 7.83 -2.39 -0.02 1.98 16 36 H 0.05 2.36 7.57 -2.38 -0.02 2.34 16 Total: -1.00 -67.88 296.74 1.66 -66.22 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.48 Total: 26.07 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.54 Total: 6.13 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -4.37 Total: -111.14 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.06 Total: -35.73 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -67.88 1.66 -66.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202579952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.982 kcal (2) G-P(sol) polarization free energy of solvation -67.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds