Wall clock time and date at job start Sun Mar 29 2020 22:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30836 * 125.89591 * 2 1 4 4 N 1.40077 * 108.20799 * 179.97438 * 3 2 1 5 5 C 1.46497 * 126.04083 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.92254 * 0.02562 * 4 3 2 7 7 C 1.35316 * 107.74600 * 359.74216 * 6 4 3 8 8 C 1.50702 * 126.03889 * 180.27396 * 7 6 4 9 9 H 1.09006 * 109.46753 * 145.14345 * 8 7 6 10 10 C 1.52995 * 109.47218 * 265.14613 * 8 7 6 11 11 O 1.42898 * 109.46990 * 25.15181 * 8 7 6 12 12 C 1.42898 * 113.99905 * 149.99814 * 11 8 7 13 13 C 1.53001 * 109.47040 * 179.97438 * 12 11 8 14 14 C 1.50700 * 109.47227 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00015 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00100 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00018 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00254 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47215 * 90.00026 * 18 16 14 20 20 H 1.48499 * 109.47397 * 210.00127 * 18 16 14 21 21 H 1.48501 * 109.46696 * 330.00046 * 18 16 14 22 22 H 1.08999 * 109.46995 * 90.02443 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02130 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02571 * 1 2 3 25 25 H 1.09002 * 109.46771 * 89.98253 * 5 4 3 26 26 H 1.09007 * 109.47331 * 209.97653 * 5 4 3 27 27 H 1.08994 * 109.47325 * 329.98338 * 5 4 3 28 28 H 1.08002 * 126.12743 * 179.97438 * 6 4 3 29 29 H 1.08998 * 109.47333 * 300.00041 * 10 8 7 30 30 H 1.09000 * 109.47054 * 60.00309 * 10 8 7 31 31 H 1.09000 * 109.46879 * 180.02562 * 10 8 7 32 32 H 1.08998 * 109.47128 * 299.99760 * 12 11 8 33 33 H 1.09002 * 109.47000 * 59.99936 * 12 11 8 34 34 H 1.08998 * 109.47567 * 300.00229 * 13 12 11 35 35 H 1.09007 * 109.46999 * 60.00146 * 13 12 11 36 36 H 0.97002 * 119.99620 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6343 0.0006 5 6 4.7898 1.5010 0.0003 6 6 3.6143 -0.7152 0.0004 7 6 2.3272 -1.1329 0.0055 8 6 1.8601 -2.5657 0.0130 9 1 0.9471 -2.6471 0.6030 10 6 1.5823 -3.0191 -1.4216 11 8 2.8733 -3.3941 0.5867 12 6 2.3681 -4.5507 1.2566 13 6 3.5345 -5.3593 1.8280 14 6 3.0017 -6.5788 2.5352 15 1 1.9375 -6.7593 2.5729 16 6 3.8727 -7.4640 3.1340 17 7 3.4077 -8.5286 3.7506 18 14 5.7133 -7.1516 3.0694 19 1 6.1194 -6.3417 4.2459 20 1 6.4365 -8.4484 3.0877 21 1 6.0470 -6.4162 1.8232 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3634 0.8902 0.5134 25 1 5.0823 1.7168 1.0279 26 1 5.6096 0.9979 -0.5127 27 1 4.5565 2.4329 -0.5145 28 1 4.4892 -1.3484 0.0003 29 1 0.8094 -2.3873 -1.8592 30 1 2.4952 -2.9377 -2.0116 31 1 1.2440 -4.0553 -1.4161 32 1 1.7081 -4.2418 2.0673 33 1 1.8117 -5.1661 0.5496 34 1 4.1942 -5.6683 1.0172 35 1 4.0913 -4.7441 2.5350 36 1 4.0205 -9.1512 4.1722 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:54 Heat of formation + Delta-G solvation = 16.972141 kcal Electronic energy + Delta-G solvation = -16691.001984 eV Core-core repulsion = 13983.828171 eV Total energy + Delta-G solvation = -2707.173812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23352 -37.65638 -34.22180 -33.25047 -31.83347 -30.01684 -29.85899 -28.59510 -25.59337 -24.66277 -22.59764 -20.69911 -20.34111 -19.35718 -16.95819 -16.72117 -15.65708 -15.58426 -14.78000 -14.59731 -14.06201 -13.99250 -13.64167 -13.27919 -12.93083 -12.76632 -12.53640 -12.33329 -12.15354 -12.05783 -11.85325 -11.34043 -11.17491 -10.78242 -10.42835 -10.30410 -9.92318 -9.80129 -9.23811 -9.16412 -8.94766 -8.54541 -8.24622 -6.06654 -4.05803 1.93393 2.51265 2.78076 3.32072 3.38926 3.44885 4.24959 4.43241 4.44927 4.93215 4.98961 5.01255 5.21294 5.24294 5.28031 5.36790 5.47783 5.52410 5.62374 5.79188 5.82786 5.99966 6.11757 6.12572 6.18137 6.34682 6.41090 6.68897 6.71607 7.05240 7.15751 7.40196 7.70233 7.75367 7.99091 8.48872 8.96063 9.55033 11.06357 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030460 B = 0.005184 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.029937 B = 5400.049515 C = 5990.509864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.081 3.919 3 N -0.305 5.305 4 N -0.383 5.383 5 C 0.105 3.895 6 C 0.083 3.917 7 C -0.231 4.231 8 C 0.164 3.836 9 H 0.062 0.938 10 C -0.164 4.164 11 O -0.389 6.389 12 C 0.077 3.923 13 C -0.009 4.009 14 C -0.523 4.523 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.902 5.902 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.263 1.263 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.178 0.822 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 18.036 -9.592 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.128 5.128 4 N -0.165 5.165 5 C -0.036 4.036 6 C -0.063 4.063 7 C -0.243 4.243 8 C 0.105 3.895 9 H 0.080 0.920 10 C -0.222 4.222 11 O -0.309 6.309 12 C 0.002 3.998 13 C -0.046 4.046 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.188 1.188 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.195 0.805 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.424 19.286 -9.501 21.503 hybrid contribution 0.876 -0.921 0.139 1.279 sum 0.452 18.364 -9.362 20.618 Atomic orbital electron populations 1.20194 0.86816 1.03347 1.02859 1.22134 0.96745 0.90024 0.99630 1.77221 0.86544 1.22650 1.26382 1.48327 1.05345 1.04931 1.57911 1.21802 0.83784 0.94799 1.03263 1.22358 0.99879 0.84020 0.99995 1.19894 0.92281 0.95215 1.16882 1.19990 0.90854 0.85226 0.93457 0.91979 1.22226 1.01764 1.01298 0.96919 1.87868 1.32854 1.37188 1.72988 1.22656 0.98376 0.84771 0.94024 1.19529 0.94182 0.94762 0.96138 1.20953 0.95570 1.05311 1.34231 0.90906 1.24955 0.98959 0.94721 0.94551 1.69910 1.35204 1.12717 1.36221 0.86755 0.85618 0.77603 0.79244 1.20228 1.21338 1.18794 0.90556 0.90325 0.90986 0.90907 0.89519 0.89602 0.80490 0.92268 0.92243 0.92142 0.94111 0.94010 0.95820 0.96331 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.26 36.01 0.37 -0.40 16 2 C 0.08 1.14 7.22 -82.41 -0.59 0.54 16 3 N -0.30 -4.51 12.57 33.67 0.42 -4.09 16 4 N -0.38 -5.04 4.01 -68.16 -0.27 -5.32 16 5 C 0.11 0.87 11.47 59.85 0.69 1.55 16 6 C 0.08 1.18 10.91 -17.22 -0.19 0.99 16 7 C -0.23 -3.46 5.24 -105.05 -0.55 -4.01 16 8 C 0.16 2.53 2.96 -27.88 -0.08 2.45 16 9 H 0.06 0.92 7.05 -51.93 -0.37 0.55 16 10 C -0.16 -2.21 9.51 37.16 0.35 -1.85 16 11 O -0.39 -7.38 9.54 -35.23 -0.34 -7.72 16 12 C 0.08 1.62 5.69 37.16 0.21 1.83 16 13 C -0.01 -0.21 4.41 -27.88 -0.12 -0.34 16 14 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 15 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 18 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.76 7.36 -51.93 -0.38 0.37 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.18 2.29 8.04 -52.49 -0.42 1.87 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.04 0.85 7.87 -51.93 -0.41 0.44 16 34 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 35 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -33.45 305.45 -5.55 -38.99 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -5.72 Total: -4.01 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.35 Total: -12.66 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.92 Total: -36.46 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.34 Total: -7.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.45 -5.55 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.965 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds