Wall clock time and date at job start Sun Mar 29 2020 22:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30836 * 125.89591 * 2 1 4 4 N 1.40077 * 108.20799 * 179.97438 * 3 2 1 5 5 C 1.46497 * 126.04083 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.92254 * 0.02562 * 4 3 2 7 7 C 1.35316 * 107.74600 * 359.74216 * 6 4 3 8 8 C 1.50702 * 126.03889 * 180.27396 * 7 6 4 9 9 H 1.09006 * 109.46753 * 145.14345 * 8 7 6 10 10 C 1.52995 * 109.47218 * 265.14613 * 8 7 6 11 11 O 1.42898 * 109.46990 * 25.15181 * 8 7 6 12 12 C 1.42898 * 113.99905 * 149.99814 * 11 8 7 13 13 C 1.53001 * 109.47040 * 179.97438 * 12 11 8 14 14 C 1.50700 * 109.47227 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00015 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00100 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00018 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00254 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47215 * 90.00026 * 18 16 14 20 20 H 1.48499 * 109.47397 * 210.00127 * 18 16 14 21 21 H 1.48501 * 109.46696 * 330.00046 * 18 16 14 22 22 H 1.08999 * 109.46995 * 90.02443 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02130 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02571 * 1 2 3 25 25 H 1.09002 * 109.46771 * 89.98253 * 5 4 3 26 26 H 1.09007 * 109.47331 * 209.97653 * 5 4 3 27 27 H 1.08994 * 109.47325 * 329.98338 * 5 4 3 28 28 H 1.08002 * 126.12743 * 179.97438 * 6 4 3 29 29 H 1.08998 * 109.47333 * 300.00041 * 10 8 7 30 30 H 1.09000 * 109.47054 * 60.00309 * 10 8 7 31 31 H 1.09000 * 109.46879 * 180.02562 * 10 8 7 32 32 H 1.08998 * 109.47128 * 299.99760 * 12 11 8 33 33 H 1.09002 * 109.47000 * 59.99936 * 12 11 8 34 34 H 1.08998 * 109.47567 * 300.00229 * 13 12 11 35 35 H 1.09007 * 109.46999 * 60.00146 * 13 12 11 36 36 H 0.97002 * 119.99620 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6343 0.0006 5 6 4.7898 1.5010 0.0003 6 6 3.6143 -0.7152 0.0004 7 6 2.3272 -1.1329 0.0055 8 6 1.8601 -2.5657 0.0130 9 1 0.9471 -2.6471 0.6030 10 6 1.5823 -3.0191 -1.4216 11 8 2.8733 -3.3941 0.5867 12 6 2.3681 -4.5507 1.2566 13 6 3.5345 -5.3593 1.8280 14 6 3.0017 -6.5788 2.5352 15 1 1.9375 -6.7593 2.5729 16 6 3.8727 -7.4640 3.1340 17 7 3.4077 -8.5286 3.7506 18 14 5.7133 -7.1516 3.0694 19 1 6.1194 -6.3417 4.2459 20 1 6.4365 -8.4484 3.0877 21 1 6.0470 -6.4162 1.8232 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3634 0.8902 0.5134 25 1 5.0823 1.7168 1.0279 26 1 5.6096 0.9979 -0.5127 27 1 4.5565 2.4329 -0.5145 28 1 4.4892 -1.3484 0.0003 29 1 0.8094 -2.3873 -1.8592 30 1 2.4952 -2.9377 -2.0116 31 1 1.2440 -4.0553 -1.4161 32 1 1.7081 -4.2418 2.0673 33 1 1.8117 -5.1661 0.5496 34 1 4.1942 -5.6683 1.0172 35 1 4.0913 -4.7441 2.5350 36 1 4.0205 -9.1512 4.1722 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:53 Heat of formation + Delta-G solvation = -4.725114 kcal Electronic energy + Delta-G solvation = -16691.942847 eV Core-core repulsion = 13983.828171 eV Total energy + Delta-G solvation = -2708.114676 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24878 -39.07892 -35.54605 -34.93120 -33.32697 -31.72325 -30.74977 -29.60976 -26.82084 -26.24725 -23.70386 -22.57864 -21.47569 -20.39949 -19.05158 -17.74267 -17.13349 -16.59026 -16.31910 -16.23367 -15.60597 -15.08054 -14.67654 -14.51405 -14.23118 -14.01901 -13.93074 -13.36129 -13.16252 -13.02437 -12.96925 -12.86274 -12.84537 -12.28103 -12.01966 -11.81610 -11.67874 -11.50542 -11.33853 -10.79736 -10.42106 -10.16024 -9.29004 -8.31089 -6.36520 0.91027 1.37318 1.38778 1.51964 1.65475 1.72265 2.36359 2.85603 3.04322 3.57403 3.97217 4.11978 4.23928 4.35811 4.38064 4.42088 4.45897 4.52260 4.53602 4.66435 4.78694 4.84472 4.88362 4.94666 5.01126 5.06030 5.20665 5.26995 5.32406 5.46648 5.59987 5.71542 6.11471 6.22370 6.47832 6.70035 6.74410 7.28650 8.85095 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030460 B = 0.005184 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.029937 B = 5400.049515 C = 5990.509864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.075 3.925 3 N -0.330 5.330 4 N -0.383 5.383 5 C 0.095 3.905 6 C 0.076 3.924 7 C -0.254 4.254 8 C 0.161 3.839 9 H 0.067 0.933 10 C -0.158 4.158 11 O -0.398 6.398 12 C 0.090 3.910 13 C -0.005 4.005 14 C -0.535 4.535 15 H 0.039 0.961 16 C 0.011 3.989 17 N -0.947 5.947 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.249 1.249 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.186 0.814 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 19.508 -10.481 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 N -0.154 5.154 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.071 4.071 7 C -0.265 4.265 8 C 0.102 3.898 9 H 0.085 0.915 10 C -0.216 4.216 11 O -0.318 6.318 12 C 0.014 3.986 13 C -0.043 4.043 14 C -0.573 4.573 15 H 0.057 0.943 16 C -0.187 4.187 17 N -0.587 5.587 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.172 1.172 22 H 0.112 0.888 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.114 0.886 28 H 0.203 0.797 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.675 20.794 -10.403 23.261 hybrid contribution 0.477 -1.330 0.409 1.471 sum 1.152 19.465 -9.994 21.911 Atomic orbital electron populations 1.20322 0.84780 1.03982 1.04168 1.22598 0.98186 0.89410 0.98909 1.77175 0.87510 1.23347 1.27331 1.48700 1.05872 1.05092 1.56818 1.22172 0.82924 0.94957 1.04452 1.22572 1.00044 0.84784 0.99695 1.19976 0.93032 0.95031 1.18470 1.20176 0.90175 0.85108 0.94309 0.91535 1.22175 1.02294 1.01466 0.95652 1.87818 1.34216 1.36708 1.73068 1.22288 0.96644 0.85435 0.94226 1.19404 0.95385 0.93657 0.95831 1.21245 0.94271 1.07063 1.34693 0.94309 1.25912 1.04442 0.94308 0.94026 1.70047 1.37265 1.13951 1.37422 0.85662 0.78982 0.77980 0.80081 1.19184 1.20598 1.17220 0.88834 0.89728 0.90300 0.89947 0.87137 0.88584 0.79661 0.90062 0.92601 0.92510 0.94284 0.93663 0.95698 0.96192 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.26 71.24 0.73 -0.67 16 2 C 0.07 1.99 7.22 43.10 0.31 2.30 16 3 N -0.33 -9.31 12.57 -47.38 -0.60 -9.90 16 4 N -0.38 -9.45 4.01 -369.56 -1.48 -10.93 16 5 C 0.09 1.36 11.47 127.77 1.47 2.82 16 6 C 0.08 2.04 10.91 83.54 0.91 2.95 16 7 C -0.25 -7.23 5.24 -20.14 -0.11 -7.34 16 8 C 0.16 4.73 2.96 29.85 0.09 4.82 16 9 H 0.07 1.88 7.05 -2.38 -0.02 1.86 16 10 C -0.16 -3.97 9.51 71.98 0.68 -3.29 16 11 O -0.40 -14.58 9.54 -148.98 -1.42 -16.00 16 12 C 0.09 3.72 5.69 71.98 0.41 4.13 16 13 C -0.01 -0.26 4.41 29.85 0.13 -0.12 16 14 C -0.53 -31.12 9.66 25.60 0.25 -30.88 16 15 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 16 C 0.01 0.62 5.47 84.65 0.46 1.08 16 17 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 18 Si 0.95 44.58 27.47 68.60 1.88 46.46 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 22 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.08 1.48 7.36 -2.39 -0.02 1.46 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.19 4.50 8.04 -2.91 -0.02 4.48 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.45 7.87 -2.39 -0.02 1.43 16 32 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 33 H 0.05 1.81 7.87 -2.39 -0.02 1.79 16 34 H 0.02 1.20 7.20 -2.39 -0.02 1.18 16 35 H 0.02 0.96 7.57 -2.38 -0.02 0.94 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -71.24 305.45 5.01 -66.23 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.99 Total: 7.27 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 5.34 Total: -24.19 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.78 Total: -79.76 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -1.42 Total: -16.00 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -71.24 5.01 -66.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.507 kcal (2) G-P(sol) polarization free energy of solvation -71.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds