Wall clock time and date at job start Sun Mar 29 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35315 * 126.12760 * 2 1 4 4 C 1.50699 * 126.03917 * 0.02562 * 3 2 1 5 5 H 1.09004 * 109.47169 * 34.71242 * 4 3 2 6 6 C 1.53002 * 109.47073 * 274.71561 * 4 3 2 7 7 O 1.42898 * 109.47250 * 154.71463 * 4 3 2 8 8 C 1.42906 * 113.99821 * 210.00344 * 7 4 3 9 9 C 1.53006 * 109.46748 * 179.97438 * 8 7 4 10 10 C 1.50699 * 109.46866 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00270 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99834 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00496 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47325 * 59.99531 * 14 12 10 16 16 H 1.48496 * 109.47425 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47183 * 299.99726 * 14 12 10 18 18 C 1.39871 * 107.92247 * 179.75995 * 3 2 1 19 19 N 1.30835 * 108.19773 * 0.24182 * 18 3 2 20 20 N 1.34946 * 126.12544 * 180.17580 * 2 1 3 21 21 C 1.46498 * 126.04127 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.47258 * 90.00034 * 1 2 3 23 23 H 1.08998 * 109.47251 * 210.00001 * 1 2 3 24 24 H 1.08999 * 109.47484 * 330.00450 * 1 2 3 25 25 H 1.08995 * 109.47093 * 59.99942 * 6 4 3 26 26 H 1.09006 * 109.46773 * 179.97438 * 6 4 3 27 27 H 1.08996 * 109.47002 * 299.99559 * 6 4 3 28 28 H 1.09000 * 109.47490 * 59.99859 * 8 7 4 29 29 H 1.09001 * 109.47232 * 299.99213 * 8 7 4 30 30 H 1.08993 * 109.46955 * 299.99993 * 9 8 7 31 31 H 1.09000 * 109.47050 * 59.99822 * 9 8 7 32 32 H 0.96992 * 120.00032 * 180.02562 * 13 12 10 33 33 H 1.07993 * 125.89712 * 180.26666 * 18 3 2 34 34 H 1.08996 * 109.47158 * 270.25924 * 21 20 2 35 35 H 1.09001 * 109.47187 * 30.26208 * 21 20 2 36 36 H 1.09003 * 109.47175 * 150.26145 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 0.0005 5 1 0.9280 2.6146 0.5861 6 6 1.5737 2.9771 -1.4369 7 8 2.8572 3.3539 0.5758 8 6 2.3535 4.5149 1.2397 9 6 3.5206 5.3202 1.8145 10 6 2.9895 6.5448 2.5140 11 1 1.9259 6.7303 2.5451 12 6 3.8612 7.4289 3.1134 13 7 5.1564 7.2033 3.0752 14 14 3.2029 8.9465 3.9811 15 1 2.2974 8.5330 5.0829 16 1 4.3355 9.7282 4.5389 17 1 2.4524 9.7845 3.0117 18 6 3.6335 0.6560 0.0056 19 7 3.6333 -0.6524 0.0036 20 7 2.3026 -1.0900 -0.0033 21 6 1.8539 -2.4846 -0.0071 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 0.8003 2.3468 -1.8757 26 1 1.2394 4.0146 -1.4364 27 1 2.4889 2.8901 -2.0224 28 1 1.6888 4.2113 2.0484 29 1 1.8027 5.1300 0.5281 30 1 4.0710 4.7049 2.5261 31 1 4.1856 5.6238 1.0060 32 1 5.7697 7.8250 3.4971 33 1 4.5083 1.2892 0.0110 34 1 1.7386 -2.8319 1.0196 35 1 0.8975 -2.5572 -0.5249 36 1 2.5919 -3.1023 -0.5189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:56 Heat of formation + Delta-G solvation = 14.560879 kcal Electronic energy + Delta-G solvation = -16656.140695 eV Core-core repulsion = 13948.862322 eV Total energy + Delta-G solvation = -2707.278373 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22639 -37.52012 -33.70328 -33.23405 -32.61498 -30.48562 -29.18236 -26.87800 -26.60033 -24.56476 -22.56305 -20.92998 -20.41365 -19.16291 -16.85102 -16.22090 -15.70428 -15.30739 -14.82776 -14.61227 -14.34033 -13.99469 -13.45044 -13.16751 -12.90008 -12.65201 -12.41584 -12.32629 -12.17625 -12.14628 -11.68509 -11.23285 -10.96430 -10.78878 -10.49836 -10.28725 -10.10160 -9.44154 -9.16156 -9.14157 -8.84495 -8.31157 -8.15743 -5.98900 -4.02387 1.90223 2.55245 2.96569 3.34729 3.38973 3.41033 4.25309 4.47411 4.58289 4.67892 4.97191 5.00681 5.18881 5.23549 5.28913 5.36964 5.44193 5.49221 5.62744 5.68346 5.85933 5.98135 6.12756 6.29737 6.31037 6.42988 6.50163 6.83672 6.96278 7.06116 7.62202 7.81678 7.85827 7.92004 8.20620 8.41497 9.04225 9.60968 11.12736 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044085 B = 0.004374 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.978355 B = 6399.880788 C = 6614.595391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.225 4.225 4 C 0.164 3.836 5 H 0.057 0.943 6 C -0.164 4.164 7 O -0.381 6.381 8 C 0.070 3.930 9 C 0.026 3.974 10 C -0.524 4.524 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.081 3.919 19 N -0.307 5.307 20 N -0.381 5.381 21 C 0.105 3.895 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.188 0.812 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 -16.356 -7.798 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.236 4.236 4 C 0.104 3.896 5 H 0.075 0.925 6 C -0.222 4.222 7 O -0.300 6.300 8 C -0.005 4.005 9 C -0.012 4.012 10 C -0.562 4.562 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.530 5.530 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.105 4.105 19 N -0.127 5.127 20 N -0.165 5.165 21 C -0.037 4.037 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.205 0.795 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.451 -17.546 -7.748 21.383 hybrid contribution -1.004 1.589 0.556 1.960 sum -10.455 -15.957 -7.192 20.388 Atomic orbital electron populations 1.20451 0.87557 1.03828 1.03103 1.20650 0.94229 0.87051 1.02827 1.19784 0.93017 0.94584 1.16264 1.19968 0.90754 0.85571 0.93297 0.92538 1.22227 1.01764 1.01125 0.97085 1.87940 1.32288 1.36806 1.73005 1.22894 0.99278 0.84781 0.93579 1.19057 0.92560 0.93389 0.96154 1.21028 0.93169 1.06875 1.35145 0.92652 1.24988 0.94819 0.98166 0.96286 1.69973 1.01654 1.37048 1.44307 0.86602 0.78366 0.82795 0.79898 1.20217 1.21215 1.20186 1.23785 0.98264 0.91214 0.97216 1.77379 0.96104 1.13280 1.25954 1.48347 1.04131 1.05558 1.58425 1.21741 1.00703 0.78242 1.03028 0.90320 0.91291 0.89544 0.92644 0.92227 0.91958 0.94857 0.94729 0.95767 0.95726 0.92830 0.79481 0.91089 0.89894 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.68 36.00 0.35 -0.43 16 2 C 0.08 1.03 6.93 -82.27 -0.57 0.46 16 3 C -0.23 -3.51 5.22 -105.05 -0.55 -4.06 16 4 C 0.16 2.63 2.92 -27.88 -0.08 2.55 16 5 H 0.06 0.85 6.94 -51.93 -0.36 0.49 16 6 C -0.16 -2.29 9.51 37.16 0.35 -1.94 16 7 O -0.38 -7.81 9.58 -35.23 -0.34 -8.14 16 8 C 0.07 1.56 5.69 37.16 0.21 1.77 16 9 C 0.03 0.69 5.34 -27.88 -0.15 0.55 16 10 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 11 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 14 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.08 1.35 11.49 -17.37 -0.20 1.15 16 19 N -0.31 -4.95 12.58 30.62 0.39 -4.57 16 20 N -0.38 -5.00 4.01 -63.89 -0.26 -5.26 16 21 C 0.10 0.83 11.09 59.85 0.66 1.49 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.45 7.74 -51.93 -0.40 0.05 16 24 H 0.09 0.74 7.25 -51.93 -0.38 0.36 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.83 7.87 -51.93 -0.41 0.43 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.03 0.73 7.87 -51.93 -0.41 0.32 16 30 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.19 3.04 8.06 -52.49 -0.42 2.62 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.43 7.67 -51.93 -0.40 0.03 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -33.62 307.28 -5.94 -39.56 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -5.70 Total: -4.23 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -0.38 Total: -12.23 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.87 Total: -36.30 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.34 Total: -8.14 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.62 -5.94 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.126 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds