Wall clock time and date at job start Sun Mar 29 2020 22:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35315 * 126.12760 * 2 1 4 4 C 1.50699 * 126.03917 * 0.02562 * 3 2 1 5 5 H 1.09004 * 109.47169 * 34.71242 * 4 3 2 6 6 C 1.53002 * 109.47073 * 274.71561 * 4 3 2 7 7 O 1.42898 * 109.47250 * 154.71463 * 4 3 2 8 8 C 1.42906 * 113.99821 * 210.00344 * 7 4 3 9 9 C 1.53006 * 109.46748 * 179.97438 * 8 7 4 10 10 C 1.50699 * 109.46866 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00270 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99834 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00496 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47325 * 59.99531 * 14 12 10 16 16 H 1.48496 * 109.47425 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47183 * 299.99726 * 14 12 10 18 18 C 1.39871 * 107.92247 * 179.75995 * 3 2 1 19 19 N 1.30835 * 108.19773 * 0.24182 * 18 3 2 20 20 N 1.34946 * 126.12544 * 180.17580 * 2 1 3 21 21 C 1.46498 * 126.04127 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.47258 * 90.00034 * 1 2 3 23 23 H 1.08998 * 109.47251 * 210.00001 * 1 2 3 24 24 H 1.08999 * 109.47484 * 330.00450 * 1 2 3 25 25 H 1.08995 * 109.47093 * 59.99942 * 6 4 3 26 26 H 1.09006 * 109.46773 * 179.97438 * 6 4 3 27 27 H 1.08996 * 109.47002 * 299.99559 * 6 4 3 28 28 H 1.09000 * 109.47490 * 59.99859 * 8 7 4 29 29 H 1.09001 * 109.47232 * 299.99213 * 8 7 4 30 30 H 1.08993 * 109.46955 * 299.99993 * 9 8 7 31 31 H 1.09000 * 109.47050 * 59.99822 * 9 8 7 32 32 H 0.96992 * 120.00032 * 180.02562 * 13 12 10 33 33 H 1.07993 * 125.89712 * 180.26666 * 18 3 2 34 34 H 1.08996 * 109.47158 * 270.25924 * 21 20 2 35 35 H 1.09001 * 109.47187 * 30.26208 * 21 20 2 36 36 H 1.09003 * 109.47175 * 150.26145 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 0.0005 5 1 0.9280 2.6146 0.5861 6 6 1.5737 2.9771 -1.4369 7 8 2.8572 3.3539 0.5758 8 6 2.3535 4.5149 1.2397 9 6 3.5206 5.3202 1.8145 10 6 2.9895 6.5448 2.5140 11 1 1.9259 6.7303 2.5451 12 6 3.8612 7.4289 3.1134 13 7 5.1564 7.2033 3.0752 14 14 3.2029 8.9465 3.9811 15 1 2.2974 8.5330 5.0829 16 1 4.3355 9.7282 4.5389 17 1 2.4524 9.7845 3.0117 18 6 3.6335 0.6560 0.0056 19 7 3.6333 -0.6524 0.0036 20 7 2.3026 -1.0900 -0.0033 21 6 1.8539 -2.4846 -0.0071 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 0.8003 2.3468 -1.8757 26 1 1.2394 4.0146 -1.4364 27 1 2.4889 2.8901 -2.0224 28 1 1.6888 4.2113 2.0484 29 1 1.8027 5.1300 0.5281 30 1 4.0710 4.7049 2.5261 31 1 4.1856 5.6238 1.0060 32 1 5.7697 7.8250 3.4971 33 1 4.5083 1.2892 0.0110 34 1 1.7386 -2.8319 1.0196 35 1 0.8975 -2.5572 -0.5249 36 1 2.5919 -3.1023 -0.5189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:55 Heat of formation + Delta-G solvation = -7.570764 kcal Electronic energy + Delta-G solvation = -16657.100395 eV Core-core repulsion = 13948.862322 eV Total energy + Delta-G solvation = -2708.238073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29609 -39.03590 -35.51401 -34.41943 -33.92695 -31.98219 -30.72749 -27.84083 -27.46259 -26.58130 -23.79024 -22.85507 -21.58864 -20.23255 -18.66164 -17.67182 -16.86975 -16.59512 -16.52466 -16.28069 -15.68316 -15.08002 -14.43096 -14.27955 -14.23391 -13.92107 -13.69223 -13.44531 -13.26977 -13.06672 -12.99228 -12.82312 -12.79078 -12.39067 -12.22557 -11.99711 -11.43908 -11.42312 -11.24741 -10.63327 -10.35074 -10.16937 -9.25461 -8.20700 -6.34056 0.87292 1.42467 1.46953 1.54826 1.66942 1.76326 2.40287 2.95965 3.13001 3.69441 3.80233 4.18442 4.21547 4.29498 4.39153 4.42511 4.49026 4.53894 4.55955 4.65842 4.74917 4.81349 4.92442 4.99076 5.03464 5.10607 5.22452 5.34411 5.42589 5.62581 5.64956 5.77300 6.14433 6.17908 6.55574 6.74730 6.82532 7.35746 8.92275 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044085 B = 0.004374 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.978355 B = 6399.880788 C = 6614.595391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 C -0.259 4.259 4 C 0.160 3.840 5 H 0.072 0.928 6 C -0.158 4.158 7 O -0.405 6.405 8 C 0.088 3.912 9 C 0.028 3.972 10 C -0.545 4.545 11 H 0.069 0.931 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.975 3.025 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.263 1.263 18 C 0.055 3.945 19 N -0.337 5.337 20 N -0.378 5.378 21 C 0.091 3.909 22 H 0.103 0.897 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.048 0.952 30 H -0.010 1.010 31 H -0.007 1.007 32 H 0.265 0.735 33 H 0.172 0.828 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.777 -16.960 -7.879 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C -0.270 4.270 4 C 0.102 3.898 5 H 0.090 0.910 6 C -0.215 4.215 7 O -0.325 6.325 8 C 0.012 3.988 9 C -0.009 4.009 10 C -0.583 4.583 11 H 0.088 0.912 12 C -0.199 4.199 13 N -0.573 5.573 14 Si 0.798 3.202 15 H -0.189 1.189 16 H -0.209 1.209 17 H -0.187 1.187 18 C -0.129 4.129 19 N -0.159 5.159 20 N -0.161 5.161 21 C -0.048 4.048 22 H 0.121 0.879 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.008 0.992 31 H 0.012 0.988 32 H 0.074 0.926 33 H 0.189 0.811 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.734 -18.185 -7.844 23.545 hybrid contribution 0.013 1.603 0.543 1.693 sum -12.721 -16.581 -7.301 22.138 Atomic orbital electron populations 1.20669 0.83868 1.05317 1.05066 1.21268 0.96181 0.85944 0.99842 1.19865 0.93000 0.95126 1.19013 1.20217 0.90085 0.85228 0.94291 0.91009 1.22178 1.02067 1.01627 0.95654 1.87904 1.34559 1.36733 1.73322 1.22466 0.96797 0.85291 0.94205 1.18927 0.93760 0.93741 0.94506 1.21469 0.94016 1.07441 1.35381 0.91238 1.26067 0.94945 1.01939 0.96961 1.70135 1.03325 1.38566 1.45319 0.85357 0.77862 0.78083 0.78865 1.18871 1.20913 1.18717 1.23707 0.98766 0.91729 0.98713 1.77281 0.98538 1.12941 1.27104 1.48780 1.03087 1.07485 1.56720 1.22208 1.02432 0.75559 1.04604 0.87900 0.88637 0.89268 0.89481 0.92393 0.93389 0.93905 0.93330 0.99194 0.98845 0.92630 0.81133 0.89705 0.86282 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.68 71.24 0.69 -0.47 16 2 C 0.10 2.28 6.93 41.40 0.29 2.57 16 3 C -0.26 -7.99 5.22 -20.14 -0.11 -8.10 16 4 C 0.16 5.06 2.92 29.85 0.09 5.14 16 5 H 0.07 2.02 6.94 -2.39 -0.02 2.00 16 6 C -0.16 -4.21 9.51 71.98 0.68 -3.52 16 7 O -0.41 -17.09 9.58 -148.98 -1.43 -18.51 16 8 C 0.09 3.95 5.69 71.98 0.41 4.36 16 9 C 0.03 1.58 5.34 29.85 0.16 1.74 16 10 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 11 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 12 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 13 N -0.93 -58.56 13.29 21.45 0.28 -58.28 16 14 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 15 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 18 C 0.06 1.94 11.49 85.24 0.98 2.91 16 19 N -0.34 -11.05 12.58 -57.03 -0.72 -11.77 16 20 N -0.38 -9.23 4.01 -356.04 -1.43 -10.66 16 21 C 0.09 1.17 11.09 127.77 1.42 2.59 16 22 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.09 0.75 7.74 -2.39 -0.02 0.73 16 24 H 0.09 1.16 7.25 -2.39 -0.02 1.14 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.54 7.87 -2.38 -0.02 1.52 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 29 H 0.05 2.02 7.87 -2.39 -0.02 2.00 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.17 6.19 8.06 -2.91 -0.02 6.17 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.12 0.68 7.67 -2.39 -0.02 0.66 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.68 307.28 5.08 -70.60 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.04 Total: 6.05 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 5.30 Total: -23.85 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -1.86 Total: -80.71 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -1.43 Total: -18.51 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -75.68 5.08 -70.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.027 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds