Wall clock time and date at job start Sun Mar 29 2020 22:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35308 * 126.12402 * 2 1 4 4 C 1.50704 * 126.04457 * 359.97438 * 3 2 1 5 5 H 1.08999 * 109.47080 * 325.00487 * 4 3 2 6 6 C 1.53008 * 109.46819 * 84.99653 * 4 3 2 7 7 O 1.42899 * 109.47338 * 204.99986 * 4 3 2 8 8 C 1.42903 * 113.99629 * 150.00083 * 7 4 3 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 4 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00241 * 14 12 10 16 16 H 1.48494 * 109.47178 * 209.99936 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00183 * 14 12 10 18 18 C 1.39872 * 107.91964 * 180.23765 * 3 2 1 19 19 N 1.30832 * 108.20186 * 359.56052 * 18 3 2 20 20 N 1.34950 * 126.12725 * 179.97438 * 2 1 3 21 21 C 1.46501 * 126.03878 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46638 * 90.00422 * 1 2 3 23 23 H 1.09003 * 109.47116 * 209.99983 * 1 2 3 24 24 H 1.08991 * 109.47284 * 330.00192 * 1 2 3 25 25 H 1.09000 * 109.46387 * 180.02562 * 6 4 3 26 26 H 1.08994 * 109.47301 * 300.00333 * 6 4 3 27 27 H 1.08999 * 109.46614 * 60.00548 * 6 4 3 28 28 H 1.09002 * 109.47382 * 59.99956 * 8 7 4 29 29 H 1.09001 * 109.46938 * 299.99942 * 8 7 4 30 30 H 1.09001 * 109.47194 * 299.99575 * 9 8 7 31 31 H 1.08992 * 109.47399 * 59.99748 * 9 8 7 32 32 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 33 33 H 1.08005 * 125.89933 * 179.73142 * 18 3 2 34 34 H 1.08998 * 109.47396 * 89.99180 * 21 20 2 35 35 H 1.08995 * 109.47020 * 210.00058 * 21 20 2 36 36 H 1.09004 * 109.47010 * 329.99500 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0929 0.0000 4 6 1.8432 2.5276 -0.0005 5 1 0.9308 2.6155 -0.5903 6 6 1.5668 2.9749 1.4363 7 8 2.8599 3.3548 -0.5698 8 6 2.3594 4.5168 -1.2341 9 6 3.5291 5.3230 -1.8022 10 6 3.0012 6.5488 -2.5022 11 1 1.9379 6.7339 -2.5387 12 6 3.8759 7.4338 -3.0961 13 7 5.1708 7.2086 -3.0513 14 14 3.2216 8.9528 -3.9645 15 1 3.1322 10.0760 -2.9971 16 1 4.1396 9.3244 -5.0709 17 1 1.8729 8.6655 -4.5156 18 6 3.6334 0.6560 -0.0055 19 7 3.6334 -0.6523 0.0008 20 7 2.3027 -1.0900 0.0005 21 6 1.8540 -2.4846 0.0006 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.2326 4.0124 1.4358 26 1 0.7913 2.3439 1.8705 27 1 2.4792 2.8870 2.0261 28 1 1.8051 5.1308 -0.5242 29 1 1.6984 4.2145 -2.0464 30 1 4.1903 5.6254 -0.9901 31 1 4.0829 4.7089 -2.5121 32 1 5.7862 7.8314 -3.4688 33 1 4.5083 1.2892 -0.0110 34 1 1.7429 -2.8307 -1.0270 35 1 2.5897 -3.1029 0.5148 36 1 0.8953 -2.5578 0.5142 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:58 Heat of formation + Delta-G solvation = 14.636065 kcal Electronic energy + Delta-G solvation = -16656.553765 eV Core-core repulsion = 13949.278653 eV Total energy + Delta-G solvation = -2707.275112 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.22791 -37.52031 -33.70610 -33.24139 -32.62391 -30.47287 -29.17802 -26.90115 -26.60001 -24.56466 -22.54249 -20.92979 -20.41451 -19.17257 -16.85717 -16.22422 -15.71687 -15.31807 -14.82406 -14.60804 -14.33159 -13.98741 -13.42368 -13.21250 -12.97746 -12.60139 -12.36908 -12.32066 -12.18659 -12.16327 -11.64884 -11.25347 -10.98618 -10.78172 -10.49229 -10.29623 -10.09924 -9.44058 -9.15172 -9.14655 -8.84666 -8.31545 -8.14699 -5.99151 -4.02519 1.90467 2.54932 2.96402 3.33343 3.39182 3.42302 4.25031 4.47515 4.58909 4.68748 4.91140 5.00236 5.18810 5.24749 5.32962 5.36874 5.44547 5.48186 5.63028 5.65371 5.87267 5.99437 6.12278 6.28602 6.31212 6.43125 6.50263 6.83728 6.96321 7.05928 7.62354 7.81757 7.85746 7.91995 8.20533 8.41445 9.04305 9.60910 11.12512 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044115 B = 0.004374 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.555934 B = 6400.368433 C = 6616.328667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.079 3.921 3 C -0.226 4.226 4 C 0.164 3.836 5 H 0.057 0.943 6 C -0.165 4.165 7 O -0.381 6.381 8 C 0.070 3.930 9 C 0.025 3.975 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.081 3.919 19 N -0.307 5.307 20 N -0.381 5.381 21 C 0.104 3.896 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.188 0.812 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 -16.382 7.699 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.237 4.237 4 C 0.104 3.896 5 H 0.075 0.925 6 C -0.223 4.223 7 O -0.300 6.300 8 C -0.005 4.005 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.530 5.530 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.105 4.105 19 N -0.127 5.127 20 N -0.164 5.164 21 C -0.037 4.037 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.205 0.795 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.508 -17.575 7.653 21.398 hybrid contribution -0.987 1.596 -0.548 1.955 sum -10.495 -15.979 7.105 20.395 Atomic orbital electron populations 1.20465 0.87563 1.03605 1.03358 1.20653 0.94228 0.87058 1.02809 1.19784 0.93005 0.94577 1.16325 1.19957 0.90761 0.85558 0.93328 0.92525 1.22240 1.01759 1.01130 0.97147 1.87939 1.32202 1.36691 1.73181 1.22892 0.99311 0.84754 0.93570 1.19063 0.92538 0.93396 0.96206 1.21066 0.93172 1.06746 1.35155 0.92598 1.24990 0.94820 0.98179 0.96287 1.69980 1.01576 1.36883 1.44534 0.86546 0.78751 0.83109 0.79303 1.20600 1.21159 1.19855 1.23786 0.98272 0.91216 0.97195 1.77382 0.96073 1.13279 1.26015 1.48346 1.04146 1.05565 1.58358 1.21745 1.00691 0.78229 1.03067 0.90162 0.91325 0.89610 0.92205 0.92651 0.91931 0.94732 0.94848 0.95724 0.95759 0.92887 0.79475 0.91033 0.89509 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.80 36.01 0.35 -0.43 16 2 C 0.08 1.03 6.93 -82.26 -0.57 0.46 16 3 C -0.23 -3.52 5.23 -105.05 -0.55 -4.07 16 4 C 0.16 2.63 2.73 -27.88 -0.08 2.56 16 5 H 0.06 0.85 7.66 -51.93 -0.40 0.46 16 6 C -0.17 -2.30 9.51 37.16 0.35 -1.95 16 7 O -0.38 -7.80 9.58 -35.23 -0.34 -8.14 16 8 C 0.07 1.56 5.69 37.16 0.21 1.77 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 18 C 0.08 1.35 11.48 -17.37 -0.20 1.15 16 19 N -0.31 -4.96 12.58 30.63 0.39 -4.57 16 20 N -0.38 -4.99 4.01 -63.89 -0.26 -5.25 16 21 C 0.10 0.83 11.27 59.85 0.67 1.50 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.42 7.08 -51.93 -0.37 0.06 16 24 H 0.09 0.69 7.51 -51.93 -0.39 0.30 16 25 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 26 H 0.05 0.63 7.76 -51.93 -0.40 0.23 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.72 7.87 -51.93 -0.41 0.32 16 29 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.19 3.05 8.06 -52.48 -0.42 2.62 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.43 7.05 -51.93 -0.37 0.06 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -33.65 306.71 -5.90 -39.54 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.66 Total: -4.22 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.36 Total: -12.21 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.87 Total: -36.29 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.34 Total: -8.14 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.65 -5.90 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.178 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds