Wall clock time and date at job start Sun Mar 29 2020 22:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35308 * 126.12402 * 2 1 4 4 C 1.50704 * 126.04457 * 359.97438 * 3 2 1 5 5 H 1.08999 * 109.47080 * 325.00487 * 4 3 2 6 6 C 1.53008 * 109.46819 * 84.99653 * 4 3 2 7 7 O 1.42899 * 109.47338 * 204.99986 * 4 3 2 8 8 C 1.42903 * 113.99629 * 150.00083 * 7 4 3 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 4 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00241 * 14 12 10 16 16 H 1.48494 * 109.47178 * 209.99936 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00183 * 14 12 10 18 18 C 1.39872 * 107.91964 * 180.23765 * 3 2 1 19 19 N 1.30832 * 108.20186 * 359.56052 * 18 3 2 20 20 N 1.34950 * 126.12725 * 179.97438 * 2 1 3 21 21 C 1.46501 * 126.03878 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46638 * 90.00422 * 1 2 3 23 23 H 1.09003 * 109.47116 * 209.99983 * 1 2 3 24 24 H 1.08991 * 109.47284 * 330.00192 * 1 2 3 25 25 H 1.09000 * 109.46387 * 180.02562 * 6 4 3 26 26 H 1.08994 * 109.47301 * 300.00333 * 6 4 3 27 27 H 1.08999 * 109.46614 * 60.00548 * 6 4 3 28 28 H 1.09002 * 109.47382 * 59.99956 * 8 7 4 29 29 H 1.09001 * 109.46938 * 299.99942 * 8 7 4 30 30 H 1.09001 * 109.47194 * 299.99575 * 9 8 7 31 31 H 1.08992 * 109.47399 * 59.99748 * 9 8 7 32 32 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 33 33 H 1.08005 * 125.89933 * 179.73142 * 18 3 2 34 34 H 1.08998 * 109.47396 * 89.99180 * 21 20 2 35 35 H 1.08995 * 109.47020 * 210.00058 * 21 20 2 36 36 H 1.09004 * 109.47010 * 329.99500 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0929 0.0000 4 6 1.8432 2.5276 -0.0005 5 1 0.9308 2.6155 -0.5903 6 6 1.5668 2.9749 1.4363 7 8 2.8599 3.3548 -0.5698 8 6 2.3594 4.5168 -1.2341 9 6 3.5291 5.3230 -1.8022 10 6 3.0012 6.5488 -2.5022 11 1 1.9379 6.7339 -2.5387 12 6 3.8759 7.4338 -3.0961 13 7 5.1708 7.2086 -3.0513 14 14 3.2216 8.9528 -3.9645 15 1 3.1322 10.0760 -2.9971 16 1 4.1396 9.3244 -5.0709 17 1 1.8729 8.6655 -4.5156 18 6 3.6334 0.6560 -0.0055 19 7 3.6334 -0.6523 0.0008 20 7 2.3027 -1.0900 0.0005 21 6 1.8540 -2.4846 0.0006 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.2326 4.0124 1.4358 26 1 0.7913 2.3439 1.8705 27 1 2.4792 2.8870 2.0261 28 1 1.8051 5.1308 -0.5242 29 1 1.6984 4.2145 -2.0464 30 1 4.1903 5.6254 -0.9901 31 1 4.0829 4.7089 -2.5121 32 1 5.7862 7.8314 -3.4688 33 1 4.5083 1.2892 -0.0110 34 1 1.7429 -2.8307 -1.0270 35 1 2.5897 -3.1029 0.5148 36 1 0.8953 -2.5578 0.5142 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:57 Heat of formation + Delta-G solvation = -7.533682 kcal Electronic energy + Delta-G solvation = -16657.515117 eV Core-core repulsion = 13949.278653 eV Total energy + Delta-G solvation = -2708.236465 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29817 -39.03656 -35.51623 -34.42256 -33.94107 -31.97835 -30.71457 -27.86404 -27.46357 -26.58193 -23.77055 -22.85482 -21.59009 -20.24211 -18.66467 -17.67972 -16.85175 -16.62378 -16.52451 -16.28630 -15.66421 -15.08036 -14.44665 -14.29639 -14.23444 -13.94194 -13.71169 -13.45544 -13.25246 -13.07182 -12.95467 -12.84828 -12.73589 -12.36094 -12.24816 -12.03608 -11.44011 -11.40451 -11.24201 -10.64152 -10.35410 -10.17729 -9.24502 -8.20935 -6.34144 0.87308 1.42473 1.45228 1.56268 1.66734 1.75923 2.40121 2.95892 3.12921 3.70139 3.80302 4.21112 4.22306 4.27303 4.39576 4.39867 4.45567 4.53111 4.56199 4.65094 4.75698 4.80813 4.94503 4.99749 5.04625 5.08549 5.22428 5.35268 5.42692 5.62549 5.64853 5.77295 6.14247 6.17770 6.55654 6.74695 6.82627 7.35696 8.92245 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044115 B = 0.004374 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.555934 B = 6400.368433 C = 6616.328667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.097 3.903 3 C -0.259 4.259 4 C 0.160 3.840 5 H 0.072 0.928 6 C -0.159 4.159 7 O -0.405 6.405 8 C 0.088 3.912 9 C 0.028 3.972 10 C -0.544 4.544 11 H 0.069 0.931 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.975 3.025 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.259 1.259 18 C 0.055 3.945 19 N -0.337 5.337 20 N -0.377 5.377 21 C 0.091 3.909 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.043 0.957 30 H -0.007 1.007 31 H -0.010 1.010 32 H 0.265 0.735 33 H 0.172 0.828 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.817 -16.981 7.770 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.032 4.032 3 C -0.270 4.270 4 C 0.102 3.898 5 H 0.090 0.910 6 C -0.216 4.216 7 O -0.325 6.325 8 C 0.012 3.988 9 C -0.010 4.010 10 C -0.582 4.582 11 H 0.088 0.912 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.182 1.182 18 C -0.129 4.129 19 N -0.159 5.159 20 N -0.160 5.160 21 C -0.048 4.048 22 H 0.111 0.889 23 H 0.118 0.882 24 H 0.113 0.887 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.012 0.988 31 H 0.008 0.992 32 H 0.074 0.926 33 H 0.189 0.811 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.778 -18.208 7.739 23.552 hybrid contribution 0.027 1.610 -0.535 1.697 sum -12.750 -16.598 7.204 22.135 Atomic orbital electron populations 1.20683 0.83881 1.05679 1.04747 1.21268 0.96176 0.85951 0.99846 1.19868 0.92991 0.95123 1.19046 1.20202 0.90063 0.85211 0.94342 0.91030 1.22193 1.02079 1.01657 0.95684 1.87903 1.34478 1.36618 1.73486 1.22464 0.96820 0.85263 0.94207 1.18933 0.93748 0.93750 0.94539 1.21496 0.93979 1.07318 1.35398 0.91245 1.26065 0.94941 1.01952 0.96970 1.70137 1.03243 1.38432 1.45541 0.85304 0.78544 0.78347 0.77967 1.19508 1.20822 1.18243 1.23708 0.98773 0.91733 0.98701 1.77284 0.98507 1.12938 1.27156 1.48781 1.03107 1.07495 1.56639 1.22214 1.02440 0.75542 1.04624 0.88914 0.88153 0.88699 0.92351 0.89460 0.93370 0.93319 0.93918 0.98836 0.99174 0.92633 0.81130 0.89680 0.89088 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.80 71.24 0.70 -0.48 16 2 C 0.10 2.28 6.93 41.40 0.29 2.57 16 3 C -0.26 -8.00 5.23 -20.14 -0.11 -8.11 16 4 C 0.16 5.06 2.73 29.85 0.08 5.14 16 5 H 0.07 2.02 7.66 -2.39 -0.02 2.00 16 6 C -0.16 -4.22 9.51 71.98 0.68 -3.54 16 7 O -0.40 -17.07 9.58 -148.98 -1.43 -18.49 16 8 C 0.09 3.95 5.69 71.98 0.41 4.36 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 11 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 12 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 13 N -0.93 -58.53 13.29 21.45 0.28 -58.25 16 14 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 C 0.06 1.93 11.48 85.24 0.98 2.91 16 19 N -0.34 -11.06 12.58 -57.02 -0.72 -11.78 16 20 N -0.38 -9.23 4.01 -356.03 -1.43 -10.65 16 21 C 0.09 1.17 11.27 127.77 1.44 2.61 16 22 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.10 0.67 7.08 -2.39 -0.02 0.66 16 24 H 0.09 1.09 7.51 -2.39 -0.02 1.08 16 25 H 0.06 1.55 7.87 -2.39 -0.02 1.53 16 26 H 0.09 1.74 7.76 -2.39 -0.02 1.72 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 2.02 7.87 -2.39 -0.02 2.00 16 29 H 0.04 1.81 8.08 -2.39 -0.02 1.79 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 32 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.17 6.20 8.06 -2.91 -0.02 6.17 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 0.67 7.05 -2.38 -0.02 0.65 16 Total: -1.00 -75.70 306.71 5.11 -70.59 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.04 Total: 5.95 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 5.33 Total: -23.82 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.86 Total: -80.68 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -1.43 Total: -18.49 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -75.70 5.11 -70.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.059 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds