Wall clock time and date at job start Sun Mar 29 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47352 * 227.06694 * 3 2 1 5 5 C 1.52996 * 109.47486 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47178 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47168 * 179.97438 * 6 5 4 8 8 C 1.42901 * 114.00102 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.91650 * 333.90283 * 8 7 6 10 10 C 1.55157 * 111.00253 * 210.00265 * 8 7 6 11 11 C 1.54325 * 102.94184 * 206.42518 * 10 8 7 12 12 N 1.47022 * 107.26948 * 22.19107 * 11 10 8 13 13 C 1.36945 * 125.64832 * 181.02381 * 12 11 10 14 14 H 1.07997 * 119.99756 * 180.02562 * 13 12 11 15 15 C 1.38805 * 119.99878 * 0.02562 * 13 12 11 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 300.00154 * 17 15 13 20 20 H 1.48498 * 109.47018 * 60.00200 * 17 15 13 21 21 C 1.47423 * 108.70390 * 1.29074 * 12 11 10 22 22 H 1.09004 * 109.47362 * 107.06380 * 3 2 1 23 23 H 1.09004 * 109.47143 * 347.06806 * 3 2 1 24 24 H 1.09004 * 109.47143 * 59.99552 * 4 3 2 25 25 H 1.09004 * 109.47088 * 300.00145 * 4 3 2 26 26 H 1.09003 * 109.46947 * 60.00080 * 5 4 3 27 27 H 1.09004 * 109.47094 * 300.00164 * 5 4 3 28 28 H 1.09003 * 109.46980 * 60.00267 * 6 5 4 29 29 H 1.08995 * 109.47326 * 299.99877 * 6 5 4 30 30 H 1.09000 * 110.72140 * 88.06348 * 10 8 7 31 31 H 1.08998 * 110.72520 * 324.78667 * 10 8 7 32 32 H 1.09002 * 109.88274 * 262.77538 * 11 10 8 33 33 H 1.08996 * 109.88444 * 141.60894 * 11 10 8 34 34 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.37068 * 94.48354 * 21 12 11 36 36 H 1.09005 * 110.36651 * 216.80519 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9834 1.0561 5 6 4.6476 0.9836 1.0565 6 6 5.1571 1.9669 2.1122 7 8 6.5861 1.9667 2.1131 8 6 7.1669 2.8569 3.0681 9 1 6.4899 3.6807 3.2943 10 6 8.5394 3.3849 2.5734 11 6 9.2797 3.7085 3.8882 12 7 8.6466 2.9155 4.9521 13 6 8.9980 2.9308 6.2756 14 1 8.4690 2.3082 6.9819 15 6 10.0340 3.7465 6.7092 16 7 10.6783 4.5057 5.8484 17 14 10.5129 3.7679 8.5147 18 1 11.6396 4.7139 8.7167 19 1 9.3500 4.2011 9.3301 20 1 10.9303 2.4054 8.9322 21 6 7.5750 2.0963 4.3571 22 1 2.9712 0.3024 -0.9824 23 1 2.9718 -1.0008 0.2300 24 1 2.7543 0.6817 2.0385 25 1 2.7538 1.9849 0.8261 26 1 5.0111 1.2852 0.0742 27 1 5.0110 -0.0179 1.2868 28 1 4.7935 1.6657 3.0947 29 1 4.7937 2.9683 1.8816 30 1 8.4122 4.2844 1.9710 31 1 9.0692 2.6153 2.0120 32 1 9.1880 4.7711 4.1134 33 1 10.3312 3.4359 3.7985 34 1 11.4021 5.0760 6.1515 35 1 7.9491 1.1024 4.1116 36 1 6.7280 2.0258 5.0396 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205663075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:31 Heat of formation + Delta-G solvation = -10.202319 kcal Electronic energy + Delta-G solvation = -16209.472064 eV Core-core repulsion = 13501.119879 eV Total energy + Delta-G solvation = -2708.352185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.46578 -37.39311 -36.18698 -34.71323 -32.19133 -30.07879 -29.02325 -27.01379 -24.67337 -23.90415 -21.54201 -20.24402 -20.01692 -17.79944 -16.95835 -16.50110 -16.28579 -15.02518 -14.69407 -14.42697 -14.33081 -13.73690 -13.45495 -13.34227 -12.95434 -12.33252 -12.32760 -11.98657 -11.85825 -11.82379 -11.52933 -11.16533 -11.01537 -10.91866 -10.78197 -10.63297 -10.19066 -10.10987 -9.77018 -9.70965 -9.04656 -8.59345 -6.83418 -5.70903 -3.05008 2.43371 2.48176 3.41039 3.44891 3.46410 3.55578 3.96486 4.51049 4.57382 4.62331 4.95640 5.03885 5.22500 5.29664 5.39785 5.45163 5.50676 5.52207 5.57369 5.68620 5.77728 5.85543 6.01321 6.03591 6.29141 6.49071 6.54843 6.69620 6.73678 7.25051 7.55451 7.62326 7.63963 7.82905 8.26072 9.21905 9.82090 10.47839 11.40762 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.053650 B = 0.003558 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.775248 B = 7867.704091 C = 8248.963486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.207 3.793 3 C -0.026 4.026 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.060 3.940 7 O -0.381 6.381 8 C 0.073 3.927 9 H 0.067 0.933 10 C -0.140 4.140 11 C 0.178 3.822 12 N -0.605 5.605 13 C -0.229 4.229 14 H 0.078 0.922 15 C -0.009 4.009 16 N -0.923 5.923 17 Si 0.914 3.086 18 H -0.290 1.290 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.120 3.880 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.253 0.747 35 H 0.028 0.972 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 -5.880 -11.173 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.110 4.110 3 C -0.066 4.066 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.017 4.017 7 O -0.299 6.299 8 C 0.014 3.986 9 H 0.085 0.915 10 C -0.178 4.178 11 C 0.053 3.947 12 N -0.333 5.333 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.571 5.571 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.007 4.007 22 H 0.129 0.871 23 H 0.129 0.871 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.170 -5.881 -11.169 17.534 hybrid contribution 0.586 0.222 1.153 1.312 sum -11.584 -5.659 -10.016 16.326 Atomic orbital electron populations 1.81246 1.13245 1.08800 1.08759 1.29327 0.95439 0.93124 0.93134 1.19339 0.81239 1.03260 1.02750 1.21463 0.95833 0.99337 0.98757 1.21477 0.93302 1.00692 0.99997 1.22437 0.82455 0.98375 0.98399 1.87850 1.18312 1.64577 1.59176 1.23462 0.94578 0.91235 0.89295 0.91542 1.23007 0.94834 0.99903 1.00071 1.21166 0.95070 0.95889 0.82528 1.44363 1.36819 1.47658 1.04433 1.19021 1.13421 1.20807 0.82464 0.90454 1.24816 0.98505 0.99112 0.98052 1.69950 1.25072 1.29677 1.32370 0.86175 0.77789 0.77331 0.84319 1.21569 1.21169 1.21140 1.21932 0.91908 0.94382 0.92440 0.87144 0.87095 0.90746 0.90837 0.90651 0.90507 0.93427 0.93669 0.91946 0.91492 0.93392 0.93618 0.93657 0.95452 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.15 18.54 42.15 0.78 -4.37 16 2 C 0.21 1.66 15.43 -20.76 -0.32 1.34 16 3 C -0.03 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.11 -0.64 5.17 -26.74 -0.14 -0.78 16 5 C -0.12 -0.89 5.58 -26.73 -0.15 -1.03 16 6 C 0.06 0.68 5.77 37.16 0.21 0.90 16 7 O -0.38 -5.95 10.15 -35.23 -0.36 -6.31 16 8 C 0.07 1.32 3.56 -24.46 -0.09 1.23 16 9 H 0.07 1.16 7.83 -51.93 -0.41 0.76 16 10 C -0.14 -2.69 6.68 -24.90 -0.17 -2.86 16 11 C 0.18 4.37 5.37 -3.06 -0.02 4.36 16 12 N -0.60 -15.74 3.39 -169.94 -0.58 -16.32 16 13 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 16 N -0.92 -27.20 10.31 55.49 0.57 -26.63 16 17 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.12 2.56 6.97 -2.41 -0.02 2.54 16 22 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.28 7.38 -51.93 -0.38 0.90 16 33 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -32.82 305.82 -6.89 -39.71 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -5.80 Total: -6.25 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.10 Total: -1.52 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.78 Total: -47.31 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.36 Total: -6.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.82 -6.89 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.510 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds