Wall clock time and date at job start Sun Mar 29 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47352 * 227.06694 * 3 2 1 5 5 C 1.52996 * 109.47486 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47178 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47168 * 179.97438 * 6 5 4 8 8 C 1.42901 * 114.00102 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.91650 * 333.90283 * 8 7 6 10 10 C 1.55157 * 111.00253 * 210.00265 * 8 7 6 11 11 C 1.54325 * 102.94184 * 206.42518 * 10 8 7 12 12 N 1.47022 * 107.26948 * 22.19107 * 11 10 8 13 13 C 1.36945 * 125.64832 * 181.02381 * 12 11 10 14 14 H 1.07997 * 119.99756 * 180.02562 * 13 12 11 15 15 C 1.38805 * 119.99878 * 0.02562 * 13 12 11 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 300.00154 * 17 15 13 20 20 H 1.48498 * 109.47018 * 60.00200 * 17 15 13 21 21 C 1.47423 * 108.70390 * 1.29074 * 12 11 10 22 22 H 1.09004 * 109.47362 * 107.06380 * 3 2 1 23 23 H 1.09004 * 109.47143 * 347.06806 * 3 2 1 24 24 H 1.09004 * 109.47143 * 59.99552 * 4 3 2 25 25 H 1.09004 * 109.47088 * 300.00145 * 4 3 2 26 26 H 1.09003 * 109.46947 * 60.00080 * 5 4 3 27 27 H 1.09004 * 109.47094 * 300.00164 * 5 4 3 28 28 H 1.09003 * 109.46980 * 60.00267 * 6 5 4 29 29 H 1.08995 * 109.47326 * 299.99877 * 6 5 4 30 30 H 1.09000 * 110.72140 * 88.06348 * 10 8 7 31 31 H 1.08998 * 110.72520 * 324.78667 * 10 8 7 32 32 H 1.09002 * 109.88274 * 262.77538 * 11 10 8 33 33 H 1.08996 * 109.88444 * 141.60894 * 11 10 8 34 34 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.37068 * 94.48354 * 21 12 11 36 36 H 1.09005 * 110.36651 * 216.80519 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9834 1.0561 5 6 4.6476 0.9836 1.0565 6 6 5.1571 1.9669 2.1122 7 8 6.5861 1.9667 2.1131 8 6 7.1669 2.8569 3.0681 9 1 6.4899 3.6807 3.2943 10 6 8.5394 3.3849 2.5734 11 6 9.2797 3.7085 3.8882 12 7 8.6466 2.9155 4.9521 13 6 8.9980 2.9308 6.2756 14 1 8.4690 2.3082 6.9819 15 6 10.0340 3.7465 6.7092 16 7 10.6783 4.5057 5.8484 17 14 10.5129 3.7679 8.5147 18 1 11.6396 4.7139 8.7167 19 1 9.3500 4.2011 9.3301 20 1 10.9303 2.4054 8.9322 21 6 7.5750 2.0963 4.3571 22 1 2.9712 0.3024 -0.9824 23 1 2.9718 -1.0008 0.2300 24 1 2.7543 0.6817 2.0385 25 1 2.7538 1.9849 0.8261 26 1 5.0111 1.2852 0.0742 27 1 5.0110 -0.0179 1.2868 28 1 4.7935 1.6657 3.0947 29 1 4.7937 2.9683 1.8816 30 1 8.4122 4.2844 1.9710 31 1 9.0692 2.6153 2.0120 32 1 9.1880 4.7711 4.1134 33 1 10.3312 3.4359 3.7985 34 1 11.4021 5.0760 6.1515 35 1 7.9491 1.1024 4.1116 36 1 6.7280 2.0258 5.0396 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:31 Heat of formation + Delta-G solvation = -30.789003 kcal Electronic energy + Delta-G solvation = -16210.364770 eV Core-core repulsion = 13501.119879 eV Total energy + Delta-G solvation = -2709.244891 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.84619 -38.15772 -37.53816 -35.53620 -34.09983 -31.29370 -30.44068 -28.70043 -26.39791 -24.89495 -22.25977 -22.03141 -21.55778 -18.94028 -18.37238 -17.75909 -16.91954 -16.68255 -16.11338 -15.70515 -15.44859 -14.93711 -14.69059 -14.32579 -14.07134 -13.82762 -13.77103 -13.38272 -12.96811 -12.78632 -12.71143 -12.50363 -12.42588 -12.06404 -12.05330 -11.96795 -11.78516 -11.63057 -11.40074 -11.36146 -10.70418 -10.33460 -8.91598 -7.85080 -5.21994 1.46935 1.50597 1.56927 1.82527 1.89306 2.47365 2.70920 3.21962 3.33614 3.76999 3.88277 4.04507 4.12869 4.16509 4.22440 4.46942 4.49451 4.61436 4.68062 4.73729 4.81354 4.89956 4.98499 5.01776 5.08394 5.09731 5.21282 5.43299 5.44158 5.51893 5.65120 5.74436 6.17560 6.44063 6.68331 7.09302 7.75793 8.40161 9.25168 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.053650 B = 0.003558 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.775248 B = 7867.704091 C = 8248.963486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.236 3.764 3 C -0.020 4.020 4 C -0.109 4.109 5 C -0.108 4.108 6 C 0.047 3.953 7 O -0.386 6.386 8 C 0.092 3.908 9 H 0.076 0.924 10 C -0.127 4.127 11 C 0.185 3.815 12 N -0.627 5.627 13 C -0.247 4.247 14 H 0.083 0.917 15 C -0.066 4.066 16 N -0.952 5.952 17 Si 0.982 3.018 18 H -0.293 1.293 19 H -0.275 1.275 20 H -0.277 1.277 21 C 0.115 3.885 22 H 0.138 0.862 23 H 0.136 0.864 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.018 0.982 33 H 0.009 0.991 34 H 0.248 0.752 35 H 0.024 0.976 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.493 -6.649 -11.863 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.080 4.080 3 C -0.059 4.059 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.029 4.029 7 O -0.304 6.304 8 C 0.034 3.966 9 H 0.094 0.906 10 C -0.165 4.165 11 C 0.060 3.940 12 N -0.355 5.355 13 C -0.376 4.376 14 H 0.101 0.899 15 C -0.259 4.259 16 N -0.601 5.601 17 Si 0.810 3.190 18 H -0.219 1.219 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.011 4.011 22 H 0.156 0.844 23 H 0.153 0.847 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.963 -6.677 -11.875 18.805 hybrid contribution 0.815 0.416 1.347 1.629 sum -12.148 -6.261 -10.527 17.251 Atomic orbital electron populations 1.81277 1.15572 1.11275 1.11227 1.30018 0.96013 0.90962 0.90970 1.19579 0.78381 1.04270 1.03690 1.21371 0.94403 0.99886 0.99134 1.21423 0.94239 0.99739 0.99133 1.22817 0.80016 1.00252 0.99864 1.87838 1.20985 1.63774 1.57830 1.23072 0.94318 0.91192 0.88065 0.90643 1.22835 0.94981 1.01371 0.97326 1.20925 0.94027 0.94022 0.85042 1.44682 1.38159 1.48399 1.04290 1.19443 1.13531 1.20695 0.83899 0.89922 1.25702 0.98716 0.99089 1.02420 1.70175 1.25392 1.30353 1.34155 0.85106 0.77352 0.77355 0.79230 1.21928 1.20110 1.20300 1.22101 0.90831 0.93972 0.94160 0.84392 0.84658 0.91185 0.90790 0.89573 0.90106 0.93599 0.92699 0.89408 0.90847 0.96411 0.97254 0.94249 0.95787 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.67 18.54 20.01 0.37 -11.30 16 2 C 0.24 3.32 15.43 89.44 1.38 4.70 16 3 C -0.02 -0.09 5.70 28.79 0.16 0.08 16 4 C -0.11 -0.85 5.17 30.59 0.16 -0.69 16 5 C -0.11 -1.24 5.58 30.59 0.17 -1.07 16 6 C 0.05 0.92 5.77 71.98 0.42 1.34 16 7 O -0.39 -11.01 10.15 -148.98 -1.51 -12.52 16 8 C 0.09 3.18 3.56 32.06 0.11 3.29 16 9 H 0.08 2.47 7.83 -2.39 -0.02 2.45 16 10 C -0.13 -4.73 6.68 31.78 0.21 -4.52 16 11 C 0.18 9.27 5.37 86.73 0.47 9.73 16 12 N -0.63 -32.99 3.39 -691.55 -2.35 -35.33 16 13 C -0.25 -14.04 10.28 84.03 0.86 -13.17 16 14 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 15 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 16 N -0.95 -57.62 10.31 21.65 0.22 -57.40 16 17 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 18 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 C 0.12 4.81 6.97 86.93 0.61 5.42 16 22 H 0.14 -0.03 8.14 -2.38 -0.02 -0.05 16 23 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 33 H 0.01 0.52 7.51 -2.39 -0.02 0.50 16 34 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -73.04 305.82 4.82 -68.22 By element: Atomic # 1 Polarization: -2.27 SS G_CDS: 1.04 Total: -1.23 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.02 Total: 1.77 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -1.75 Total: -104.03 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -1.51 Total: -12.52 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -73.04 4.82 -68.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.428 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds