Wall clock time and date at job start Sun Mar 29 2020 22:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46972 * 305.83184 * 3 2 1 5 5 C 1.52999 * 109.46871 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47285 * 180.02562 * 5 4 3 7 7 O 1.42894 * 109.47526 * 179.97438 * 6 5 4 8 8 C 1.42897 * 114.00388 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.88557 * 32.42445 * 8 7 6 10 10 C 1.55159 * 111.04153 * 156.33047 * 8 7 6 11 11 C 1.54318 * 102.94169 * 153.58854 * 10 8 7 12 12 N 1.47292 * 107.31103 * 337.81949 * 11 10 8 13 13 C 1.36935 * 125.79485 * 178.92456 * 12 11 10 14 14 H 1.08000 * 119.99782 * 174.82802 * 13 12 11 15 15 C 1.38813 * 119.99748 * 354.82496 * 13 12 11 16 16 N 1.31620 * 120.00341 * 7.02995 * 15 13 12 17 17 Si 1.86808 * 119.99539 * 187.02565 * 15 13 12 18 18 H 1.48502 * 109.46896 * 94.99260 * 17 15 13 19 19 H 1.48501 * 109.46951 * 214.98619 * 17 15 13 20 20 H 1.48492 * 109.47136 * 334.98799 * 17 15 13 21 21 C 1.47424 * 108.55382 * 358.92245 * 12 11 10 22 22 H 1.09006 * 109.46816 * 185.83347 * 3 2 1 23 23 H 1.09001 * 109.46882 * 65.83672 * 3 2 1 24 24 H 1.08997 * 109.47055 * 60.00493 * 4 3 2 25 25 H 1.08996 * 109.47030 * 299.99854 * 4 3 2 26 26 H 1.08995 * 109.47512 * 60.00022 * 5 4 3 27 27 H 1.09004 * 109.47277 * 299.99580 * 5 4 3 28 28 H 1.09005 * 109.47017 * 59.99501 * 6 5 4 29 29 H 1.09004 * 109.46938 * 300.00386 * 6 5 4 30 30 H 1.08999 * 110.71715 * 271.95425 * 10 8 7 31 31 H 1.08999 * 110.71645 * 35.22751 * 10 8 7 32 32 H 1.09004 * 109.88141 * 97.22592 * 11 10 8 33 33 H 1.09001 * 109.88609 * 218.23118 * 11 10 8 34 34 H 0.96997 * 119.99818 * 179.97438 * 16 15 13 35 35 H 1.08992 * 110.36982 * 265.26424 * 21 12 11 36 36 H 1.09001 * 110.36388 * 143.04866 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.8435 1.1695 5 6 4.6483 -0.8423 1.1698 6 6 5.1588 -1.6871 2.3389 7 8 6.5877 -1.6865 2.3390 8 6 7.1693 -2.4513 3.3966 9 1 6.5425 -3.3070 3.6475 10 6 8.6078 -2.9038 3.0311 11 6 9.2803 -3.0654 4.4106 12 7 8.5185 -2.2457 5.3683 13 6 8.7778 -2.1307 6.7079 14 1 8.2098 -1.4372 7.3103 15 6 9.7708 -2.9055 7.2916 16 7 10.5549 -3.6472 6.5384 17 14 9.9941 -2.8953 9.1463 18 1 9.2493 -4.0343 9.7407 19 1 11.4372 -3.0238 9.4717 20 1 9.4732 -1.6200 9.7005 21 6 7.4283 -1.5684 4.6429 22 1 2.9708 1.0232 0.1045 23 1 2.9715 -0.4199 -0.9376 24 1 2.7555 -1.8660 1.0650 25 1 2.7548 -0.4229 2.1070 26 1 5.0109 0.1802 1.2745 27 1 5.0122 -1.2627 0.2323 28 1 4.7962 -2.7097 2.2339 29 1 4.7948 -1.2672 3.2767 30 1 8.5892 -3.8540 2.4973 31 1 9.1145 -2.1393 2.4422 32 1 9.2538 -4.1116 4.7156 33 1 10.3128 -2.7196 4.3624 34 1 11.2490 -4.1883 6.9463 35 1 7.7377 -0.5678 4.3412 36 1 6.5340 -1.5171 5.2639 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205663084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:33 Heat of formation + Delta-G solvation = -10.610576 kcal Electronic energy + Delta-G solvation = -16222.508888 eV Core-core repulsion = 13514.138999 eV Total energy + Delta-G solvation = -2708.369889 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.47674 -37.38989 -36.17064 -34.70812 -32.19915 -30.08325 -29.03238 -27.02304 -24.69761 -23.89056 -21.53078 -20.24724 -20.02332 -17.79380 -16.96582 -16.51113 -16.26523 -15.04068 -14.69920 -14.41661 -14.33819 -13.76614 -13.44960 -13.33703 -12.93771 -12.35208 -12.32340 -11.98772 -11.88161 -11.81861 -11.53869 -11.15738 -11.01233 -10.92049 -10.80527 -10.59949 -10.19722 -10.08875 -9.78884 -9.71086 -9.06855 -8.58378 -6.83848 -5.73161 -3.05782 2.43707 2.48493 3.39998 3.45056 3.47302 3.55749 3.96432 4.50414 4.57792 4.62594 4.95844 5.04418 5.23005 5.29748 5.39504 5.46071 5.50673 5.51218 5.57446 5.69020 5.77707 5.84144 6.01635 6.03983 6.28946 6.48086 6.54055 6.68605 6.72818 7.25363 7.54597 7.61216 7.63306 7.82157 8.24532 9.20313 9.80963 10.47507 11.39230 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049204 B = 0.003623 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.921042 B = 7726.303434 C = 8163.467090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.207 3.793 3 C -0.026 4.026 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.060 3.940 7 O -0.381 6.381 8 C 0.073 3.927 9 H 0.066 0.934 10 C -0.137 4.137 11 C 0.176 3.824 12 N -0.605 5.605 13 C -0.229 4.229 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.118 3.882 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.253 0.747 35 H 0.027 0.973 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 4.286 -12.242 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.110 4.110 3 C -0.066 4.066 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.017 4.017 7 O -0.299 6.299 8 C 0.015 3.985 9 H 0.084 0.916 10 C -0.175 4.175 11 C 0.052 3.948 12 N -0.332 5.332 13 C -0.357 4.357 14 H 0.096 0.904 15 C -0.204 4.204 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.009 4.009 22 H 0.129 0.871 23 H 0.129 0.871 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.782 4.302 -12.231 17.520 hybrid contribution 0.456 -0.189 1.211 1.307 sum -11.326 4.114 -11.021 16.329 Atomic orbital electron populations 1.81245 1.13247 1.08866 1.08692 1.29327 0.95440 0.93107 0.93152 1.19340 0.81236 1.03999 1.02008 1.21462 0.95826 1.00487 0.97619 1.21477 0.93307 1.01546 0.99125 1.22426 0.82438 0.98809 0.98006 1.87845 1.18343 1.72677 1.51067 1.23406 0.94629 0.93135 0.87377 0.91645 1.22962 0.94023 1.00221 1.00309 1.21221 0.94190 0.96194 0.83209 1.44420 1.30889 1.53150 1.04784 1.19067 1.15860 1.18551 0.82228 0.90372 1.24834 0.98247 0.99230 0.98087 1.69968 1.21494 1.32256 1.33080 0.86105 0.77040 0.77657 0.85024 1.21612 1.21729 1.20606 1.21933 0.92052 0.95052 0.91867 0.87098 0.87150 0.90832 0.90734 0.90516 0.90668 0.93680 0.93374 0.91861 0.91474 0.93243 0.93737 0.93699 0.95563 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.17 18.54 42.15 0.78 -4.38 16 2 C 0.21 1.67 15.43 -20.76 -0.32 1.35 16 3 C -0.03 -0.11 5.70 -29.52 -0.17 -0.27 16 4 C -0.11 -0.65 5.17 -26.73 -0.14 -0.78 16 5 C -0.12 -0.89 5.58 -26.73 -0.15 -1.04 16 6 C 0.06 0.69 5.82 37.16 0.22 0.90 16 7 O -0.38 -5.96 10.16 -35.23 -0.36 -6.31 16 8 C 0.07 1.32 3.49 -24.58 -0.09 1.23 16 9 H 0.07 1.15 7.90 -51.93 -0.41 0.74 16 10 C -0.14 -2.63 6.69 -24.90 -0.17 -2.79 16 11 C 0.18 4.32 5.39 -2.92 -0.02 4.30 16 12 N -0.60 -15.71 3.40 -169.86 -0.58 -16.29 16 13 C -0.23 -6.44 10.27 -15.06 -0.15 -6.59 16 14 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 15 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 16 N -0.92 -27.09 10.38 55.49 0.58 -26.52 16 17 Si 0.91 22.06 29.56 -169.99 -5.02 17.04 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.12 2.50 6.96 -2.53 -0.02 2.48 16 22 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.48 8.11 -51.93 -0.42 0.06 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.32 7.31 -51.93 -0.38 0.94 16 33 H 0.04 1.20 7.62 -51.93 -0.40 0.80 16 34 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -32.81 305.99 -6.89 -39.70 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -5.80 Total: -6.31 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.10 Total: -1.52 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.78 Total: -47.19 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.36 Total: -6.31 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.81 -6.89 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.086 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds