Wall clock time and date at job start Sun Mar 29 2020 22:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46972 * 305.83184 * 3 2 1 5 5 C 1.52999 * 109.46871 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47285 * 180.02562 * 5 4 3 7 7 O 1.42894 * 109.47526 * 179.97438 * 6 5 4 8 8 C 1.42897 * 114.00388 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.88557 * 32.42445 * 8 7 6 10 10 C 1.55159 * 111.04153 * 156.33047 * 8 7 6 11 11 C 1.54318 * 102.94169 * 153.58854 * 10 8 7 12 12 N 1.47292 * 107.31103 * 337.81949 * 11 10 8 13 13 C 1.36935 * 125.79485 * 178.92456 * 12 11 10 14 14 H 1.08000 * 119.99782 * 174.82802 * 13 12 11 15 15 C 1.38813 * 119.99748 * 354.82496 * 13 12 11 16 16 N 1.31620 * 120.00341 * 7.02995 * 15 13 12 17 17 Si 1.86808 * 119.99539 * 187.02565 * 15 13 12 18 18 H 1.48502 * 109.46896 * 94.99260 * 17 15 13 19 19 H 1.48501 * 109.46951 * 214.98619 * 17 15 13 20 20 H 1.48492 * 109.47136 * 334.98799 * 17 15 13 21 21 C 1.47424 * 108.55382 * 358.92245 * 12 11 10 22 22 H 1.09006 * 109.46816 * 185.83347 * 3 2 1 23 23 H 1.09001 * 109.46882 * 65.83672 * 3 2 1 24 24 H 1.08997 * 109.47055 * 60.00493 * 4 3 2 25 25 H 1.08996 * 109.47030 * 299.99854 * 4 3 2 26 26 H 1.08995 * 109.47512 * 60.00022 * 5 4 3 27 27 H 1.09004 * 109.47277 * 299.99580 * 5 4 3 28 28 H 1.09005 * 109.47017 * 59.99501 * 6 5 4 29 29 H 1.09004 * 109.46938 * 300.00386 * 6 5 4 30 30 H 1.08999 * 110.71715 * 271.95425 * 10 8 7 31 31 H 1.08999 * 110.71645 * 35.22751 * 10 8 7 32 32 H 1.09004 * 109.88141 * 97.22592 * 11 10 8 33 33 H 1.09001 * 109.88609 * 218.23118 * 11 10 8 34 34 H 0.96997 * 119.99818 * 179.97438 * 16 15 13 35 35 H 1.08992 * 110.36982 * 265.26424 * 21 12 11 36 36 H 1.09001 * 110.36388 * 143.04866 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.8435 1.1695 5 6 4.6483 -0.8423 1.1698 6 6 5.1588 -1.6871 2.3389 7 8 6.5877 -1.6865 2.3390 8 6 7.1693 -2.4513 3.3966 9 1 6.5425 -3.3070 3.6475 10 6 8.6078 -2.9038 3.0311 11 6 9.2803 -3.0654 4.4106 12 7 8.5185 -2.2457 5.3683 13 6 8.7778 -2.1307 6.7079 14 1 8.2098 -1.4372 7.3103 15 6 9.7708 -2.9055 7.2916 16 7 10.5549 -3.6472 6.5384 17 14 9.9941 -2.8953 9.1463 18 1 9.2493 -4.0343 9.7407 19 1 11.4372 -3.0238 9.4717 20 1 9.4732 -1.6200 9.7005 21 6 7.4283 -1.5684 4.6429 22 1 2.9708 1.0232 0.1045 23 1 2.9715 -0.4199 -0.9376 24 1 2.7555 -1.8660 1.0650 25 1 2.7548 -0.4229 2.1070 26 1 5.0109 0.1802 1.2745 27 1 5.0122 -1.2627 0.2323 28 1 4.7962 -2.7097 2.2339 29 1 4.7948 -1.2672 3.2767 30 1 8.5892 -3.8540 2.4973 31 1 9.1145 -2.1393 2.4422 32 1 9.2538 -4.1116 4.7156 33 1 10.3128 -2.7196 4.3624 34 1 11.2490 -4.1883 6.9463 35 1 7.7377 -0.5678 4.3412 36 1 6.5340 -1.5171 5.2639 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:33 Heat of formation + Delta-G solvation = -31.178996 kcal Electronic energy + Delta-G solvation = -16223.400802 eV Core-core repulsion = 13514.138999 eV Total energy + Delta-G solvation = -2709.261802 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85665 -38.15222 -37.52563 -35.53627 -34.10657 -31.31078 -30.43348 -28.71320 -26.40870 -24.89745 -22.25508 -22.02633 -21.56205 -18.94269 -18.36636 -17.76735 -16.91974 -16.69307 -16.14006 -15.69626 -15.46053 -14.91609 -14.69299 -14.34849 -14.06089 -13.83953 -13.78813 -13.38723 -12.97216 -12.81143 -12.72375 -12.50416 -12.42397 -12.07276 -12.00565 -11.94935 -11.79895 -11.64201 -11.39789 -11.35401 -10.69836 -10.35525 -8.91744 -7.87101 -5.22459 1.46944 1.48894 1.57990 1.82514 1.89301 2.46851 2.70177 3.21687 3.32505 3.76560 3.87311 4.05134 4.12362 4.16149 4.22919 4.46775 4.49279 4.61680 4.67457 4.73315 4.81188 4.89789 4.98452 5.01660 5.07884 5.09703 5.20997 5.43285 5.44438 5.51787 5.63865 5.73776 6.16617 6.43460 6.68319 7.08201 7.74695 8.40114 9.24176 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049204 B = 0.003623 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.921042 B = 7726.303434 C = 8163.467090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.236 3.764 3 C -0.020 4.020 4 C -0.109 4.109 5 C -0.107 4.107 6 C 0.047 3.953 7 O -0.385 6.385 8 C 0.092 3.908 9 H 0.074 0.926 10 C -0.124 4.124 11 C 0.183 3.817 12 N -0.627 5.627 13 C -0.246 4.246 14 H 0.083 0.917 15 C -0.065 4.065 16 N -0.950 5.950 17 Si 0.980 3.020 18 H -0.285 1.285 19 H -0.294 1.294 20 H -0.267 1.267 21 C 0.113 3.887 22 H 0.136 0.864 23 H 0.139 0.861 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.008 0.992 34 H 0.249 0.751 35 H 0.024 0.976 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.137 4.853 -13.085 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.080 4.080 3 C -0.059 4.059 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.030 4.030 7 O -0.304 6.304 8 C 0.033 3.967 9 H 0.092 0.908 10 C -0.162 4.162 11 C 0.058 3.942 12 N -0.355 5.355 13 C -0.375 4.375 14 H 0.100 0.900 15 C -0.258 4.258 16 N -0.599 5.599 17 Si 0.808 3.192 18 H -0.212 1.212 19 H -0.220 1.220 20 H -0.192 1.192 21 C -0.012 4.012 22 H 0.153 0.847 23 H 0.156 0.844 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.614 4.894 -13.094 18.829 hybrid contribution 0.705 -0.318 1.447 1.641 sum -11.909 4.575 -11.647 17.275 Atomic orbital electron populations 1.81276 1.15575 1.11377 1.11125 1.30021 0.96017 0.90932 0.90999 1.19580 0.78372 1.05381 1.02571 1.21371 0.94417 1.00903 0.98121 1.21422 0.94224 1.01005 0.97853 1.22802 0.80045 1.00364 0.99745 1.87833 1.20958 1.72111 1.49480 1.23020 0.94327 0.92730 0.86579 0.90816 1.22790 0.94381 1.01945 0.97107 1.20988 0.93105 0.94086 0.86009 1.44740 1.32418 1.53624 1.04746 1.19463 1.15791 1.18561 0.83678 0.89961 1.25704 0.98202 0.99267 1.02621 1.70181 1.21956 1.33037 1.34704 0.85038 0.76545 0.78069 0.79548 1.21234 1.22044 1.19206 1.22095 0.90864 0.95128 0.93159 0.84658 0.84365 0.90786 0.91225 0.90111 0.89522 0.92724 0.93668 0.89329 0.90769 0.96239 0.97332 0.94215 0.95861 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.72 18.54 20.01 0.37 -11.35 16 2 C 0.24 3.34 15.43 89.44 1.38 4.72 16 3 C -0.02 -0.09 5.70 28.79 0.16 0.08 16 4 C -0.11 -0.87 5.17 30.59 0.16 -0.71 16 5 C -0.11 -1.24 5.58 30.60 0.17 -1.07 16 6 C 0.05 0.93 5.82 71.98 0.42 1.35 16 7 O -0.39 -10.99 10.16 -148.98 -1.51 -12.50 16 8 C 0.09 3.17 3.49 31.99 0.11 3.28 16 9 H 0.07 2.43 7.90 -2.39 -0.02 2.41 16 10 C -0.12 -4.61 6.69 31.78 0.21 -4.40 16 11 C 0.18 9.15 5.39 86.68 0.47 9.61 16 12 N -0.63 -32.93 3.40 -691.31 -2.35 -35.28 16 13 C -0.25 -13.98 10.27 84.03 0.86 -13.12 16 14 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 15 C -0.06 -3.71 5.48 84.86 0.46 -3.25 16 16 N -0.95 -57.42 10.38 21.65 0.22 -57.19 16 17 Si 0.98 45.71 29.56 68.60 2.03 47.73 16 18 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.11 4.72 6.96 86.86 0.60 5.33 16 22 H 0.14 0.06 8.14 -2.38 -0.02 0.04 16 23 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.05 1.00 8.11 -2.38 -0.02 0.98 16 29 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 31 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.02 1.07 7.31 -2.38 -0.02 1.05 16 33 H 0.01 0.47 7.62 -2.39 -0.02 0.46 16 34 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -72.96 305.99 4.81 -68.14 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: 1.04 Total: -1.38 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 5.02 Total: 1.83 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -1.76 Total: -103.82 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -1.51 Total: -12.50 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.96 4.81 -68.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.966 kcal (2) G-P(sol) polarization free energy of solvation -72.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds