Wall clock time and date at job start Sun Mar 29 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47129 * 249.50320 * 3 2 1 5 5 C 1.53004 * 109.47311 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47311 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46930 * 179.97438 * 6 5 4 8 8 C 1.42904 * 113.99749 * 179.97438 * 7 6 5 9 9 C 1.53514 * 114.17059 * 210.00163 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.13896 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 H 1.09011 * 109.47039 * 129.50660 * 3 2 1 22 22 H 1.08998 * 109.47985 * 9.50878 * 3 2 1 23 23 H 1.08997 * 109.47047 * 60.00171 * 4 3 2 24 24 H 1.08998 * 109.47176 * 300.00110 * 4 3 2 25 25 H 1.09005 * 109.47217 * 59.99592 * 5 4 3 26 26 H 1.08999 * 109.46786 * 300.00486 * 5 4 3 27 27 H 1.08997 * 109.47047 * 59.99714 * 6 5 4 28 28 H 1.08998 * 109.47176 * 299.99653 * 6 5 4 29 29 H 1.09002 * 113.25611 * 342.95779 * 8 7 6 30 30 H 1.09000 * 113.47331 * 105.37574 * 9 8 7 31 31 H 1.08997 * 113.47627 * 334.90698 * 9 8 7 32 32 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 33 33 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 35 35 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 36 36 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1177 0.5060 1.3512 5 6 4.6477 0.5073 1.3510 6 6 5.1575 1.0132 2.7019 7 8 6.5865 1.0138 2.7019 8 6 7.1675 1.4723 3.9243 9 6 8.5309 2.1571 3.7543 10 7 8.9710 1.4659 4.9805 11 6 10.3438 0.9629 4.8375 12 6 10.8458 0.4854 6.1757 13 1 10.2091 0.5496 7.0456 14 6 12.1186 -0.0324 6.2897 15 7 12.8943 -0.1101 5.2305 16 14 12.7412 -0.6236 7.9488 17 1 13.4031 0.5005 8.6583 18 1 11.5986 -1.1164 8.7593 19 1 13.7168 -1.7250 7.7474 20 6 7.9870 0.4114 4.6724 21 1 2.9710 0.6547 -0.7930 22 1 2.9719 -1.0126 -0.1698 23 1 2.7547 -0.1479 2.1441 24 1 2.7539 1.5194 1.5208 25 1 5.0104 1.1614 0.5580 26 1 5.0118 -0.5059 1.1810 27 1 4.7948 0.3595 3.4951 28 1 4.7934 2.0265 2.8713 29 1 6.4676 2.0215 4.5541 30 1 8.4883 3.2412 3.8585 31 1 9.0678 1.8396 2.8604 32 1 10.9877 1.7630 4.4721 33 1 10.3553 0.1350 4.1285 34 1 13.7898 -0.4740 5.3109 35 1 8.3788 -0.3718 4.0235 36 1 7.4834 0.0162 5.5547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:31 Heat of formation + Delta-G solvation = 1.916963 kcal Electronic energy + Delta-G solvation = -15824.276320 eV Core-core repulsion = 13116.449666 eV Total energy + Delta-G solvation = -2707.826654 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.55662 -37.65124 -36.79169 -34.81353 -32.83343 -30.27131 -28.88254 -25.41580 -25.18094 -24.20726 -21.71252 -21.43477 -19.37136 -17.85083 -16.91622 -16.45242 -16.19313 -15.34843 -15.21052 -14.51705 -14.35815 -13.93810 -13.82102 -13.40580 -13.14447 -12.68291 -12.28386 -12.09025 -12.04393 -11.93679 -11.79420 -11.31744 -11.24180 -11.02428 -10.95473 -10.72332 -10.51473 -10.19016 -9.74816 -9.22871 -9.13143 -8.43295 -7.92523 -6.03504 -4.04779 2.38293 2.43369 3.32338 3.37849 3.42010 3.46750 3.83733 4.43066 4.49889 4.53091 4.83539 4.87908 4.96772 5.02671 5.12019 5.19901 5.31625 5.34217 5.37760 5.40265 5.56838 5.86818 5.90071 5.98816 6.08538 6.18297 6.31756 6.40657 6.59985 7.19362 7.20163 7.43911 7.64891 7.85503 8.09957 8.44874 9.02482 9.59129 11.07620 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062971 B = 0.003059 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.540528 B = 9150.736819 C = 9244.183202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.207 3.793 3 C -0.026 4.026 4 C -0.114 4.114 5 C -0.119 4.119 6 C 0.060 3.940 7 O -0.376 6.376 8 C 0.053 3.947 9 C -0.003 4.003 10 N -0.465 5.465 11 C 0.161 3.839 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.053 3.947 15 N -0.900 5.900 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.287 1.287 20 C -0.005 4.005 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.005 0.995 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.207 1.329 -9.078 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.111 4.111 3 C -0.066 4.066 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.017 4.017 7 O -0.294 6.294 8 C -0.006 4.006 9 C -0.133 4.133 10 N -0.189 5.189 11 C 0.035 3.965 12 C -0.544 4.544 13 H 0.081 0.919 14 C -0.148 4.148 15 N -0.539 5.539 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.213 1.213 20 C -0.134 4.134 21 H 0.129 0.871 22 H 0.129 0.871 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.589 1.539 -8.647 19.660 hybrid contribution 0.973 -0.727 0.299 1.251 sum -16.616 0.812 -8.348 18.613 Atomic orbital electron populations 1.81251 1.13234 1.08959 1.08531 1.29313 0.95426 0.93100 0.93219 1.19336 0.81270 1.05384 1.00640 1.21456 0.95716 1.02553 0.95599 1.21494 0.93404 1.03203 0.97541 1.22468 0.82166 0.99678 0.97397 1.87934 1.18673 1.86438 1.36366 1.24001 0.93923 0.97016 0.85621 1.24049 0.93670 1.00078 0.95463 1.68950 1.06364 1.14028 1.29604 1.20261 0.83843 0.94755 0.97606 1.21100 0.98805 1.39928 0.94538 0.91863 1.25018 0.96782 0.96047 0.96943 1.69960 1.08841 1.46350 1.28785 0.86461 0.78575 0.78335 0.83820 1.20608 1.19841 1.21283 1.24242 0.94862 0.95646 0.98693 0.87106 0.87065 0.90757 0.90829 0.90540 0.90443 0.93336 0.93460 0.88921 0.90409 0.91271 0.95253 0.97676 0.92894 0.91065 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.89 18.54 42.15 0.78 -4.11 16 2 C 0.21 1.53 15.43 -20.76 -0.32 1.21 16 3 C -0.03 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.11 -0.52 5.17 -26.73 -0.14 -0.66 16 5 C -0.12 -0.78 5.58 -26.73 -0.15 -0.93 16 6 C 0.06 0.57 5.78 37.16 0.21 0.79 16 7 O -0.38 -5.27 10.40 -35.23 -0.37 -5.63 16 8 C 0.05 0.81 4.65 -26.20 -0.12 0.69 16 9 C 0.00 -0.06 7.52 -7.53 -0.06 -0.12 16 10 N -0.47 -10.23 6.32 -246.08 -1.55 -11.78 16 11 C 0.16 4.27 4.57 -4.98 -0.02 4.25 16 12 C -0.51 -14.52 9.39 -34.44 -0.32 -14.84 16 13 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 16 Si 0.90 21.82 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.00 -0.09 7.56 -7.54 -0.06 -0.15 16 21 H 0.11 0.19 8.14 -51.92 -0.42 -0.23 16 22 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 1.26 7.88 -51.93 -0.41 0.85 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 32 H 0.03 0.83 8.08 -51.92 -0.42 0.41 16 33 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.42 7.42 -51.93 -0.39 1.04 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -33.20 312.34 -7.73 -40.93 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -5.78 Total: -6.14 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.24 Total: -8.58 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.04 Total: -42.07 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.37 Total: -5.63 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.20 -7.73 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.846 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds