Wall clock time and date at job start Sun Mar 29 2020 21:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47129 * 249.50320 * 3 2 1 5 5 C 1.53004 * 109.47311 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47311 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46930 * 179.97438 * 6 5 4 8 8 C 1.42904 * 113.99749 * 179.97438 * 7 6 5 9 9 C 1.53514 * 114.17059 * 210.00163 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.13896 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 H 1.09011 * 109.47039 * 129.50660 * 3 2 1 22 22 H 1.08998 * 109.47985 * 9.50878 * 3 2 1 23 23 H 1.08997 * 109.47047 * 60.00171 * 4 3 2 24 24 H 1.08998 * 109.47176 * 300.00110 * 4 3 2 25 25 H 1.09005 * 109.47217 * 59.99592 * 5 4 3 26 26 H 1.08999 * 109.46786 * 300.00486 * 5 4 3 27 27 H 1.08997 * 109.47047 * 59.99714 * 6 5 4 28 28 H 1.08998 * 109.47176 * 299.99653 * 6 5 4 29 29 H 1.09002 * 113.25611 * 342.95779 * 8 7 6 30 30 H 1.09000 * 113.47331 * 105.37574 * 9 8 7 31 31 H 1.08997 * 113.47627 * 334.90698 * 9 8 7 32 32 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 33 33 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 35 35 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 36 36 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1177 0.5060 1.3512 5 6 4.6477 0.5073 1.3510 6 6 5.1575 1.0132 2.7019 7 8 6.5865 1.0138 2.7019 8 6 7.1675 1.4723 3.9243 9 6 8.5309 2.1571 3.7543 10 7 8.9710 1.4659 4.9805 11 6 10.3438 0.9629 4.8375 12 6 10.8458 0.4854 6.1757 13 1 10.2091 0.5496 7.0456 14 6 12.1186 -0.0324 6.2897 15 7 12.8943 -0.1101 5.2305 16 14 12.7412 -0.6236 7.9488 17 1 13.4031 0.5005 8.6583 18 1 11.5986 -1.1164 8.7593 19 1 13.7168 -1.7250 7.7474 20 6 7.9870 0.4114 4.6724 21 1 2.9710 0.6547 -0.7930 22 1 2.9719 -1.0126 -0.1698 23 1 2.7547 -0.1479 2.1441 24 1 2.7539 1.5194 1.5208 25 1 5.0104 1.1614 0.5580 26 1 5.0118 -0.5059 1.1810 27 1 4.7948 0.3595 3.4951 28 1 4.7934 2.0265 2.8713 29 1 6.4676 2.0215 4.5541 30 1 8.4883 3.2412 3.8585 31 1 9.0678 1.8396 2.8604 32 1 10.9877 1.7630 4.4721 33 1 10.3553 0.1350 4.1285 34 1 13.7898 -0.4740 5.3109 35 1 8.3788 -0.3718 4.0235 36 1 7.4834 0.0162 5.5547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205672934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:30 Heat of formation + Delta-G solvation = -21.922207 kcal Electronic energy + Delta-G solvation = -15825.310064 eV Core-core repulsion = 13116.449666 eV Total energy + Delta-G solvation = -2708.860398 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00350 -38.39183 -37.72312 -35.51907 -34.92060 -31.37064 -30.28303 -27.11303 -26.73495 -25.01441 -23.36620 -22.14904 -20.79196 -18.64064 -18.36925 -17.82644 -17.03756 -16.85031 -16.26871 -16.04491 -15.44828 -15.17187 -14.72769 -14.41519 -14.21782 -13.95447 -13.77055 -13.61035 -13.12997 -12.97677 -12.70607 -12.53200 -12.47604 -12.28930 -12.16685 -11.89693 -11.70815 -11.57393 -11.37157 -11.18106 -10.61998 -10.29555 -9.71784 -8.23167 -6.34011 1.40692 1.42701 1.54133 1.81944 1.88535 2.39173 2.64904 3.08868 3.19979 3.44341 3.52925 3.98498 4.11888 4.13478 4.31718 4.49046 4.55619 4.57120 4.59136 4.69989 4.76017 4.76774 4.89885 4.90852 4.96759 4.98640 5.07356 5.18747 5.42032 5.50406 5.56806 5.76031 6.06595 6.39697 6.42380 6.67539 6.80137 7.35557 8.88267 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062971 B = 0.003059 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.540528 B = 9150.736819 C = 9244.183202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.237 3.763 3 C -0.021 4.021 4 C -0.107 4.107 5 C -0.112 4.112 6 C 0.047 3.953 7 O -0.391 6.391 8 C 0.086 3.914 9 C -0.009 4.009 10 N -0.483 5.483 11 C 0.177 3.823 12 C -0.528 4.528 13 H 0.060 0.940 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.271 1.271 18 H -0.265 1.265 19 H -0.280 1.280 20 C -0.013 4.013 21 H 0.136 0.864 22 H 0.134 0.866 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.002 0.998 33 H -0.021 1.021 34 H 0.266 0.734 35 H 0.052 0.948 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.030 1.410 -8.674 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.079 4.079 3 C -0.061 4.061 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.029 4.029 7 O -0.309 6.309 8 C 0.027 3.973 9 C -0.138 4.138 10 N -0.206 5.206 11 C 0.050 3.950 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.798 3.202 17 H -0.197 1.197 18 H -0.189 1.189 19 H -0.205 1.205 20 C -0.142 4.142 21 H 0.154 0.846 22 H 0.151 0.849 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.020 0.980 33 H -0.004 1.004 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.438 1.628 -8.253 20.266 hybrid contribution 1.212 -0.740 0.105 1.424 sum -17.226 0.888 -8.148 19.076 Atomic orbital electron populations 1.81281 1.15540 1.11532 1.10917 1.29990 0.95976 0.90898 0.91080 1.19582 0.78452 1.07314 1.00750 1.21360 0.94195 1.02854 0.96184 1.21449 0.94428 1.03141 0.95959 1.22845 0.79588 1.01012 0.99466 1.87918 1.21554 1.86229 1.35199 1.23628 0.93243 0.94374 0.86005 1.24119 0.95264 1.01116 0.93311 1.68833 1.04260 1.15541 1.32013 1.19910 0.86311 0.92775 0.96022 1.21427 0.99398 1.40545 0.95239 0.92148 1.25986 0.96877 0.95876 1.01139 1.70084 1.09299 1.46902 1.31172 0.85316 0.78139 0.78029 0.78727 1.19683 1.18887 1.20498 1.24298 0.94871 0.95629 0.99439 0.84581 0.84854 0.90918 0.90547 0.89933 0.90495 0.92826 0.91971 0.86104 0.88492 0.92564 0.98039 1.00364 0.92534 0.92951 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.16 18.54 20.00 0.37 -10.79 16 2 C 0.24 3.10 15.43 89.44 1.38 4.48 16 3 C -0.02 -0.08 5.70 28.79 0.16 0.09 16 4 C -0.11 -0.65 5.17 30.60 0.16 -0.49 16 5 C -0.11 -1.13 5.58 30.60 0.17 -0.96 16 6 C 0.05 0.76 5.78 71.98 0.42 1.18 16 7 O -0.39 -10.14 10.40 -148.98 -1.55 -11.69 16 8 C 0.09 2.50 4.65 30.94 0.14 2.64 16 9 C -0.01 -0.32 7.52 83.58 0.63 0.31 16 10 N -0.48 -21.41 6.32 -932.85 -5.89 -27.31 16 11 C 0.18 9.71 4.57 85.55 0.39 10.10 16 12 C -0.53 -30.89 9.39 25.60 0.24 -30.65 16 13 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 14 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 15 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 16 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C -0.01 -0.48 7.56 83.58 0.63 0.15 16 21 H 0.14 -0.08 8.14 -2.38 -0.02 -0.10 16 22 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 23 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.12 2.87 7.88 -2.39 -0.02 2.86 16 30 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.06 2.14 7.91 -2.39 -0.02 2.12 16 32 H 0.00 0.09 8.08 -2.38 -0.02 0.07 16 33 H -0.02 -1.26 7.30 -2.39 -0.02 -1.28 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.05 2.15 7.42 -2.39 -0.02 2.13 16 36 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -73.85 312.34 1.07 -72.78 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: 1.04 Total: -0.38 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.79 Total: -12.73 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -5.24 Total: -94.71 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.55 Total: -11.69 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.85 1.07 -72.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.857 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds