Wall clock time and date at job start Sun Mar 29 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47112 * 2 1 4 4 C 1.52997 * 109.47466 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47520 * 181.59772 * 4 3 2 6 6 C 1.46901 * 110.99988 * 75.94413 * 5 4 3 7 7 C 1.50698 * 109.47506 * 190.00188 * 6 5 4 8 8 H 1.08004 * 119.99485 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00376 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99873 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00160 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46948 * 89.99926 * 11 9 7 13 13 H 1.48503 * 109.47159 * 209.99642 * 11 9 7 14 14 H 1.48497 * 109.46978 * 329.99978 * 11 9 7 15 15 C 1.46900 * 111.00145 * 199.89672 * 5 4 3 16 16 C 1.50697 * 109.46873 * 76.17248 * 15 5 4 17 17 C 1.41388 * 128.00652 * 84.54026 * 16 15 5 18 18 N 1.30181 * 106.39213 * 179.97438 * 17 16 15 19 19 O 1.20914 * 111.60719 * 0.02562 * 18 17 16 20 20 C 1.34045 * 111.56709 * 359.76192 * 19 18 17 21 21 H 1.08999 * 109.47341 * 59.99906 * 1 2 3 22 22 H 1.08999 * 109.47523 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47147 * 299.99659 * 1 2 3 24 24 H 1.08999 * 109.47147 * 240.00341 * 2 1 3 25 25 H 1.08999 * 109.47341 * 120.00094 * 2 1 3 26 26 H 1.09008 * 109.46598 * 60.00178 * 3 2 1 27 27 H 1.09001 * 109.47602 * 300.00298 * 3 2 1 28 28 H 1.09003 * 109.46817 * 61.59864 * 4 3 2 29 29 H 1.09005 * 109.47388 * 301.60077 * 4 3 2 30 30 H 1.09002 * 109.47499 * 310.00447 * 6 5 4 31 31 H 1.09002 * 109.46956 * 70.00191 * 6 5 4 32 32 H 0.97002 * 120.00252 * 180.02562 * 10 9 7 33 33 H 1.09007 * 109.47010 * 196.16639 * 15 5 4 34 34 H 1.08995 * 109.47221 * 316.17255 * 15 5 4 35 35 H 1.07996 * 126.80264 * 359.94012 * 17 16 15 36 36 H 1.08000 * 126.77674 * 180.29003 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8270 0.0393 6 6 3.9204 3.3972 1.3859 7 6 4.1976 4.8776 1.3357 8 1 4.4521 5.3478 0.3973 9 6 4.1274 5.6316 2.4879 10 7 3.8179 5.0590 3.6306 11 14 4.4717 7.4666 2.4257 12 1 3.2064 8.1991 2.1654 13 1 5.0407 7.9077 3.7246 14 1 5.4415 7.7517 1.3380 15 6 5.4510 2.9064 -0.4249 16 6 5.4869 2.7902 -1.9269 17 6 5.3100 3.8159 -2.8839 18 7 5.4244 3.2523 -4.0518 19 8 5.6387 2.0663 -3.9548 20 6 5.7008 1.6800 -2.6727 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9563 0.8901 27 1 1.6766 1.9564 -0.8899 28 1 3.9336 0.9536 -0.9031 29 1 3.9330 0.9042 0.8762 30 1 2.9063 3.2295 1.7486 31 1 4.6309 2.9171 2.0589 32 1 3.7681 5.5895 4.4412 33 1 5.8804 3.8621 -0.1240 34 1 6.0281 2.0938 0.0163 35 1 5.1175 4.8598 -2.6853 36 1 5.8842 0.6806 -2.3067 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205696928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:03 Heat of formation + Delta-G solvation = 48.620480 kcal Electronic energy + Delta-G solvation = -17025.954804 eV Core-core repulsion = 14320.153367 eV Total energy + Delta-G solvation = -2705.801437 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.58539 -37.44471 -34.63386 -33.49960 -32.44050 -31.39220 -28.87374 -27.31027 -25.20611 -22.98514 -22.46781 -21.49210 -20.54668 -19.83404 -17.53574 -17.21314 -16.49397 -15.27861 -14.91993 -14.64415 -14.10970 -14.02852 -13.64928 -13.09413 -12.82407 -12.59206 -12.15627 -12.07181 -11.67289 -11.22255 -11.10053 -10.85819 -10.80673 -10.70621 -10.60853 -10.39573 -10.14054 -9.97983 -9.73519 -9.33134 -9.01569 -8.47660 -7.32761 -6.07482 -4.09128 1.80105 2.64087 3.29153 3.35706 3.38240 3.55204 4.38528 4.66723 4.87263 5.10262 5.23444 5.28125 5.29694 5.38798 5.43218 5.66443 5.72563 5.89667 5.99209 6.00901 6.08335 6.15053 6.22501 6.24286 6.30077 6.39372 6.56989 6.67704 6.80179 7.22871 7.28165 7.75494 8.04068 8.13300 8.48351 8.55259 8.98357 9.55491 11.03172 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.008494 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.875799 B = 3295.524793 C = 4854.847905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.056 3.944 5 N -0.533 5.533 6 C 0.194 3.806 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.129 3.871 16 C -0.165 4.165 17 C 0.010 3.990 18 N -0.378 5.378 19 O 0.087 5.913 20 C -0.079 4.079 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.036 0.964 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.102 0.898 34 H 0.035 0.965 35 H 0.189 0.811 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -8.913 -7.984 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.073 4.073 5 N -0.257 5.257 6 C 0.069 3.931 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.198 1.198 15 C 0.001 3.999 16 C -0.170 4.170 17 C -0.169 4.169 18 N -0.083 5.083 19 O 0.022 5.978 20 C -0.161 4.161 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.053 0.947 35 H 0.206 0.794 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.184 -8.142 -9.359 12.406 hybrid contribution 0.565 0.477 1.637 1.796 sum 0.749 -7.666 -7.722 10.906 Atomic orbital electron populations 1.21750 0.96196 1.00887 1.01923 1.21497 0.95624 0.97622 1.01282 1.21551 0.95209 0.95314 1.02940 1.22060 0.95542 0.90658 0.99028 1.62018 1.17612 1.16367 1.29723 1.19774 0.96976 0.94545 0.81816 1.21158 1.46845 0.92702 0.94174 0.91861 1.24974 0.95414 0.98687 0.95383 1.69952 1.48787 1.35952 0.98944 0.86534 0.78528 0.85265 0.77307 1.20636 1.21314 1.19834 1.20288 0.91164 1.02802 0.85681 1.21671 1.04313 0.91972 0.99005 1.25005 1.01765 1.02734 0.87398 1.73818 1.18849 0.91322 1.24354 1.84743 1.66306 1.19159 1.27564 1.25726 1.06033 1.01287 0.83085 0.92907 0.93323 0.92658 0.92631 0.92412 0.91361 0.91857 0.92684 0.95672 0.94621 0.99110 0.92885 0.88029 0.94722 0.79410 0.77512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.15 0.37 -1.42 16 2 C -0.12 -1.60 5.93 -26.74 -0.16 -1.75 16 3 C -0.11 -1.83 5.35 -26.73 -0.14 -1.97 16 4 C 0.06 0.95 4.80 -3.83 -0.02 0.93 16 5 N -0.53 -10.79 4.34 -237.52 -1.03 -11.82 16 6 C 0.19 4.78 4.55 -4.98 -0.02 4.76 16 7 C -0.51 -13.69 8.23 -34.44 -0.28 -13.97 16 8 H 0.06 1.67 7.32 -52.48 -0.38 1.29 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 11 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 C 0.13 2.33 5.38 -4.98 -0.03 2.30 16 16 C -0.17 -2.64 5.37 -104.42 -0.56 -3.20 16 17 C 0.01 0.16 12.16 -17.05 -0.21 -0.05 16 18 N -0.38 -6.26 12.07 30.36 0.37 -5.89 16 19 O 0.09 1.28 11.20 17.17 0.19 1.48 16 20 C -0.08 -1.05 11.29 29.74 0.34 -0.71 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.26 6.75 -51.92 -0.35 0.91 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.83 6.54 -51.93 -0.34 0.49 16 29 H 0.03 0.44 8.00 -51.93 -0.42 0.02 16 30 H 0.04 0.95 6.62 -51.93 -0.34 0.61 16 31 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.10 2.03 6.58 -51.93 -0.34 1.69 16 34 H 0.03 0.58 7.99 -51.93 -0.42 0.16 16 35 H 0.19 2.91 8.06 -52.49 -0.42 2.48 16 36 H 0.21 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -29.21 301.37 -6.56 -35.77 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.53 Total: -1.37 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.81 Total: -13.61 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.07 Total: -42.91 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.19 Total: 1.48 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.21 -6.56 -35.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205696928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.392 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds