Wall clock time and date at job start Sun Mar 29 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47112 * 2 1 4 4 C 1.52997 * 109.47466 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47520 * 181.59772 * 4 3 2 6 6 C 1.46901 * 110.99988 * 75.94413 * 5 4 3 7 7 C 1.50698 * 109.47506 * 190.00188 * 6 5 4 8 8 H 1.08004 * 119.99485 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00376 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99873 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00160 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46948 * 89.99926 * 11 9 7 13 13 H 1.48503 * 109.47159 * 209.99642 * 11 9 7 14 14 H 1.48497 * 109.46978 * 329.99978 * 11 9 7 15 15 C 1.46900 * 111.00145 * 199.89672 * 5 4 3 16 16 C 1.50697 * 109.46873 * 76.17248 * 15 5 4 17 17 C 1.41388 * 128.00652 * 84.54026 * 16 15 5 18 18 N 1.30181 * 106.39213 * 179.97438 * 17 16 15 19 19 O 1.20914 * 111.60719 * 0.02562 * 18 17 16 20 20 C 1.34045 * 111.56709 * 359.76192 * 19 18 17 21 21 H 1.08999 * 109.47341 * 59.99906 * 1 2 3 22 22 H 1.08999 * 109.47523 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47147 * 299.99659 * 1 2 3 24 24 H 1.08999 * 109.47147 * 240.00341 * 2 1 3 25 25 H 1.08999 * 109.47341 * 120.00094 * 2 1 3 26 26 H 1.09008 * 109.46598 * 60.00178 * 3 2 1 27 27 H 1.09001 * 109.47602 * 300.00298 * 3 2 1 28 28 H 1.09003 * 109.46817 * 61.59864 * 4 3 2 29 29 H 1.09005 * 109.47388 * 301.60077 * 4 3 2 30 30 H 1.09002 * 109.47499 * 310.00447 * 6 5 4 31 31 H 1.09002 * 109.46956 * 70.00191 * 6 5 4 32 32 H 0.97002 * 120.00252 * 180.02562 * 10 9 7 33 33 H 1.09007 * 109.47010 * 196.16639 * 15 5 4 34 34 H 1.08995 * 109.47221 * 316.17255 * 15 5 4 35 35 H 1.07996 * 126.80264 * 359.94012 * 17 16 15 36 36 H 1.08000 * 126.77674 * 180.29003 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8270 0.0393 6 6 3.9204 3.3972 1.3859 7 6 4.1976 4.8776 1.3357 8 1 4.4521 5.3478 0.3973 9 6 4.1274 5.6316 2.4879 10 7 3.8179 5.0590 3.6306 11 14 4.4717 7.4666 2.4257 12 1 3.2064 8.1991 2.1654 13 1 5.0407 7.9077 3.7246 14 1 5.4415 7.7517 1.3380 15 6 5.4510 2.9064 -0.4249 16 6 5.4869 2.7902 -1.9269 17 6 5.3100 3.8159 -2.8839 18 7 5.4244 3.2523 -4.0518 19 8 5.6387 2.0663 -3.9548 20 6 5.7008 1.6800 -2.6727 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9563 0.8901 27 1 1.6766 1.9564 -0.8899 28 1 3.9336 0.9536 -0.9031 29 1 3.9330 0.9042 0.8762 30 1 2.9063 3.2295 1.7486 31 1 4.6309 2.9171 2.0589 32 1 3.7681 5.5895 4.4412 33 1 5.8804 3.8621 -0.1240 34 1 6.0281 2.0938 0.0163 35 1 5.1175 4.8598 -2.6853 36 1 5.8842 0.6806 -2.3067 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205696928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:03 Heat of formation + Delta-G solvation = 30.867597 kcal Electronic energy + Delta-G solvation = -17026.724627 eV Core-core repulsion = 14320.153367 eV Total energy + Delta-G solvation = -2706.571260 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.81509 -38.97896 -35.84653 -35.10524 -34.15457 -32.67413 -30.26932 -29.04551 -26.73127 -24.56872 -23.84053 -22.74587 -21.75218 -21.36966 -18.73835 -18.58123 -18.37616 -16.90038 -16.31897 -16.18873 -15.61639 -15.46545 -15.09328 -14.26249 -14.15155 -14.00807 -13.82738 -13.41111 -13.29682 -12.83148 -12.60299 -12.53236 -12.28145 -12.15012 -11.99131 -11.72051 -11.67792 -11.34779 -11.24245 -11.08307 -10.59684 -10.29838 -8.98076 -8.19050 -6.27878 0.66524 1.36814 1.41427 1.42283 1.52696 2.40632 2.46901 3.13810 3.33029 3.53024 3.89937 4.04691 4.09404 4.17801 4.33953 4.44349 4.50256 4.64499 4.77010 4.82859 4.87359 4.93114 4.98836 5.02771 5.12731 5.19961 5.23546 5.31492 5.34862 5.45349 5.53037 5.68408 6.09835 6.36599 6.67487 6.88723 7.38406 7.41633 8.91761 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.008494 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.875799 B = 3295.524793 C = 4854.847905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.108 4.108 4 C 0.056 3.944 5 N -0.542 5.542 6 C 0.211 3.789 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.962 3.038 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.263 1.263 15 C 0.136 3.864 16 C -0.191 4.191 17 C -0.004 4.004 18 N -0.395 5.395 19 O 0.093 5.907 20 C -0.043 4.043 21 H 0.053 0.947 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.022 0.978 30 H 0.008 0.992 31 H -0.035 1.035 32 H 0.263 0.737 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.187 0.813 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -10.083 -9.412 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.146 4.146 4 C -0.072 4.072 5 N -0.266 5.266 6 C 0.085 3.915 7 C -0.559 4.559 8 H 0.081 0.919 9 C -0.194 4.194 10 N -0.574 5.574 11 Si 0.787 3.213 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.188 1.188 15 C 0.008 3.992 16 C -0.195 4.195 17 C -0.183 4.183 18 N -0.100 5.100 19 O 0.029 5.971 20 C -0.125 4.125 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.041 0.959 30 H 0.026 0.974 31 H -0.018 1.018 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.204 0.796 36 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.639 -9.314 -10.816 14.288 hybrid contribution 0.434 0.760 2.045 2.224 sum 1.073 -8.554 -8.772 12.299 Atomic orbital electron populations 1.21750 0.95387 1.02151 1.01448 1.21453 0.96337 0.95143 1.02392 1.21508 0.94846 0.97386 1.00872 1.22166 0.95891 0.88886 1.00259 1.61936 1.19508 1.18545 1.26646 1.19361 0.94426 0.93871 0.83798 1.21483 1.46296 0.93941 0.94182 0.91872 1.25826 0.95226 1.03296 0.95025 1.70074 1.49964 1.37702 0.99618 0.85492 0.78534 0.79687 0.77581 1.20284 1.20901 1.18757 1.20104 0.89757 1.02036 0.87307 1.21414 1.07247 0.93213 0.97668 1.25129 1.02153 1.03176 0.87798 1.73825 1.19752 0.92055 1.24377 1.84734 1.65632 1.18487 1.28232 1.26404 1.02242 1.02100 0.81784 0.92781 0.91156 0.93830 0.90525 0.92163 0.94689 0.92635 0.89619 0.95945 0.97389 1.01761 0.92792 0.90708 0.93101 0.79586 0.72987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.91 71.98 0.71 -2.61 16 2 C -0.12 -2.79 5.93 30.59 0.18 -2.60 16 3 C -0.11 -3.49 5.35 30.59 0.16 -3.32 16 4 C 0.06 1.84 4.80 86.30 0.41 2.26 16 5 N -0.54 -22.04 4.34 -905.38 -3.93 -25.97 16 6 C 0.21 10.83 4.55 85.56 0.39 11.22 16 7 C -0.52 -28.63 8.23 25.60 0.21 -28.42 16 8 H 0.06 3.40 7.32 -2.91 -0.02 3.38 16 9 C 0.00 0.25 5.46 84.65 0.46 0.71 16 10 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 11 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 15 C 0.14 4.82 5.38 85.56 0.46 5.28 16 16 C -0.19 -5.73 5.37 -19.74 -0.11 -5.84 16 17 C 0.00 -0.14 12.16 85.71 1.04 0.90 16 18 N -0.40 -12.38 12.07 -59.25 -0.72 -13.09 16 19 O 0.09 2.48 11.20 71.60 0.80 3.28 16 20 C -0.04 -0.98 11.29 67.17 0.76 -0.22 16 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.03 1.34 6.75 -2.38 -0.02 1.32 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 2.29 6.54 -2.39 -0.02 2.27 16 29 H 0.02 0.76 8.00 -2.38 -0.02 0.74 16 30 H 0.01 0.45 6.62 -2.39 -0.02 0.44 16 31 H -0.04 -1.95 8.12 -2.39 -0.02 -1.97 16 32 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.07 3.03 6.58 -2.38 -0.02 3.02 16 34 H 0.05 1.62 7.99 -2.39 -0.02 1.60 16 35 H 0.19 5.81 8.06 -2.91 -0.02 5.79 16 36 H 0.25 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -64.29 301.37 4.20 -60.09 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.04 Total: 7.57 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.69 Total: -22.64 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -4.36 Total: -94.08 kcal Atomic # 8 Polarization: 2.48 SS G_CDS: 0.80 Total: 3.28 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -64.29 4.20 -60.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205696928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.955 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds