Wall clock time and date at job start Sun Mar 29 2020 22:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47366 * 2 1 4 4 C 1.52994 * 109.47366 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47378 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00320 * 269.62285 * 5 4 3 7 7 H 1.08003 * 119.99664 * 322.08633 * 6 5 4 8 8 C 1.38814 * 120.00224 * 142.07926 * 6 5 4 9 9 N 1.31612 * 119.99890 * 157.00332 * 8 6 5 10 10 Si 1.86802 * 119.99882 * 337.00618 * 8 6 5 11 11 H 1.48498 * 109.47144 * 95.70094 * 10 8 6 12 12 H 1.48500 * 109.46950 * 215.70260 * 10 8 6 13 13 H 1.48502 * 109.47143 * 335.69990 * 10 8 6 14 14 C 1.46500 * 119.99911 * 89.62507 * 5 4 3 15 15 C 1.50699 * 109.47489 * 90.00144 * 14 5 4 16 16 C 1.34322 * 126.16534 * 94.99657 * 15 14 5 17 17 O 1.34752 * 107.11291 * 180.26229 * 16 15 14 18 18 C 1.33972 * 107.75422 * 359.57945 * 17 16 15 19 19 C 1.50696 * 125.61750 * 180.17997 * 18 17 16 20 20 N 1.30251 * 108.75764 * 0.42882 * 18 17 16 21 21 H 1.09009 * 109.47036 * 60.00152 * 1 2 3 22 22 H 1.08993 * 109.47442 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47081 * 300.00602 * 1 2 3 24 24 H 1.08998 * 109.47191 * 239.99942 * 2 1 3 25 25 H 1.09002 * 109.47263 * 119.99521 * 2 1 3 26 26 H 1.08998 * 109.47013 * 59.99833 * 3 2 1 27 27 H 1.09002 * 109.46538 * 299.99965 * 3 2 1 28 28 H 1.09008 * 109.47129 * 59.99413 * 4 3 2 29 29 H 1.09006 * 109.47326 * 300.00279 * 4 3 2 30 30 H 0.97003 * 120.00020 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47050 * 329.99489 * 14 5 4 32 32 H 1.09001 * 109.46805 * 210.00320 * 14 5 4 33 33 H 1.08008 * 126.44468 * 0.02562 * 16 15 14 34 34 H 1.08997 * 109.47206 * 270.28654 * 19 18 17 35 35 H 1.09002 * 109.47436 * 30.29157 * 19 18 17 36 36 H 1.09005 * 109.46938 * 150.28875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2945 3.4660 -1.1861 7 1 4.7189 2.9241 -2.0184 8 6 3.9883 4.8134 -1.3188 9 7 4.5950 5.5390 -2.2340 10 14 2.7152 5.5966 -0.1984 11 1 3.3982 6.2440 0.9504 12 1 1.9486 6.6170 -0.9575 13 1 1.7868 4.5515 0.3027 14 6 4.2942 3.5178 1.2684 15 6 5.7145 3.2822 1.7135 16 6 6.7617 4.0916 1.4840 17 8 7.8415 3.5111 2.0433 18 6 7.4412 2.3660 2.6120 19 6 8.3263 1.3989 3.3551 20 7 6.1620 2.2238 2.4121 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9284 -0.8891 29 1 3.9330 0.9288 0.8909 30 1 4.3808 6.4805 -2.3270 31 1 3.6083 3.1359 2.0246 32 1 4.1280 4.5866 1.1340 33 1 6.7426 5.0292 0.9483 34 1 8.7322 0.6673 2.6565 35 1 9.1442 1.9436 3.8268 36 1 7.7426 0.8861 4.1198 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206074834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:50 Heat of formation + Delta-G solvation = 28.887156 kcal Electronic energy + Delta-G solvation = -17270.294635 eV Core-core repulsion = 14563.637497 eV Total energy + Delta-G solvation = -2706.657139 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.65526 -36.69367 -34.52773 -33.73069 -31.96465 -31.38452 -28.80716 -27.35550 -25.62781 -23.97882 -21.39188 -20.92853 -20.72773 -19.78187 -17.12676 -16.25970 -16.05014 -15.31938 -14.77434 -14.28447 -14.12719 -13.64765 -13.52861 -12.95612 -12.89124 -12.63614 -12.43380 -12.25122 -11.99987 -11.92371 -11.15695 -10.84154 -10.69321 -10.61240 -10.41748 -10.28362 -10.13704 -9.90000 -9.76401 -9.56082 -8.56894 -8.08526 -6.88837 -6.05009 -3.44968 2.08704 3.23270 3.31054 3.33368 3.44560 3.50331 4.47308 4.51457 5.08115 5.21484 5.32909 5.40536 5.48429 5.54740 5.59429 5.62037 5.72461 5.85705 5.97396 6.16881 6.26319 6.28369 6.36077 6.37583 6.42371 6.53907 6.60087 6.61446 6.68399 6.96419 6.97603 7.14848 8.01179 8.33786 8.40590 8.94437 9.66129 10.09677 11.10440 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.009883 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.887461 B = 2832.469353 C = 4091.491607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.152 3.848 5 N -0.594 5.594 6 C -0.264 4.264 7 H 0.078 0.922 8 C 0.037 3.963 9 N -0.897 5.897 10 Si 0.866 3.134 11 H -0.285 1.285 12 H -0.299 1.299 13 H -0.263 1.263 14 C 0.211 3.789 15 C -0.011 4.011 16 C -0.066 4.066 17 O -0.213 6.213 18 C 0.158 3.842 19 C -0.048 4.048 20 N -0.474 5.474 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.212 0.788 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -7.076 9.344 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.027 3.973 5 N -0.314 5.314 6 C -0.393 4.393 7 H 0.095 0.905 8 C -0.164 4.164 9 N -0.537 5.537 10 Si 0.696 3.304 11 H -0.213 1.213 12 H -0.227 1.227 13 H -0.187 1.187 14 C 0.084 3.916 15 C -0.133 4.133 16 C -0.137 4.137 17 O -0.100 6.100 18 C -0.049 4.049 19 C -0.105 4.105 20 N -0.206 5.206 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.229 0.771 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.880 -7.426 9.432 12.036 hybrid contribution -0.328 1.330 0.081 1.373 sum 0.552 -6.095 9.513 11.312 Atomic orbital electron populations 1.21765 0.96738 1.00588 1.01597 1.21493 0.95080 0.98153 1.01273 1.22200 0.99083 0.94736 1.01823 1.20923 0.91066 0.85966 0.99390 1.44114 1.74325 1.11728 1.01276 1.18803 1.36400 0.93371 0.90701 0.90481 1.25471 0.97686 0.96756 0.96469 1.69890 1.40686 1.06995 1.36173 0.87077 0.84292 0.79044 0.79996 1.21338 1.22714 1.18707 1.19627 0.86498 0.97222 0.88215 1.23059 1.00780 0.90725 0.98759 1.24857 0.83641 1.01930 1.03265 1.84354 1.38115 1.31969 1.55566 1.26119 0.91450 0.87683 0.99639 1.20077 0.96941 0.94734 0.98795 1.70295 1.08690 1.24912 1.16717 0.92923 0.93519 0.93174 0.92402 0.92661 0.93213 0.91799 0.93343 0.93724 0.92665 0.92519 0.91435 0.77136 0.89637 0.90085 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.15 0.37 -1.62 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -1.99 16 3 C -0.14 -2.60 5.54 -26.73 -0.15 -2.75 16 4 C 0.15 3.18 5.67 -4.05 -0.02 3.16 16 5 N -0.59 -14.30 2.05 -174.61 -0.36 -14.66 16 6 C -0.26 -7.28 9.90 -15.06 -0.15 -7.43 16 7 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 8 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 9 N -0.90 -26.56 13.97 55.49 0.78 -25.79 16 10 Si 0.87 21.45 25.10 -169.99 -4.27 17.19 16 11 H -0.29 -6.81 6.68 56.52 0.38 -6.43 16 12 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 13 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.21 4.79 5.05 -5.19 -0.03 4.76 16 15 C -0.01 -0.24 6.69 -82.82 -0.55 -0.79 16 16 C -0.07 -1.36 12.08 29.35 0.35 -1.01 16 17 O -0.21 -4.02 10.78 5.35 0.06 -3.97 16 18 C 0.16 2.75 8.34 -12.95 -0.11 2.64 16 19 C -0.05 -0.53 10.51 36.00 0.38 -0.15 16 20 N -0.47 -9.61 11.29 -7.36 -0.08 -9.69 16 21 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.05 1.03 8.04 -51.92 -0.42 0.61 16 29 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.07 1.60 3.37 -51.93 -0.18 1.42 16 33 H 0.21 4.11 8.06 -52.48 -0.42 3.69 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -31.07 302.41 -5.14 -36.21 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.66 Total: 0.41 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.16 Total: -4.26 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.33 Total: -50.14 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: 0.06 Total: -3.97 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.27 Total: 17.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.07 -5.14 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206074834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.099 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds