Wall clock time and date at job start Sun Mar 29 2020 22:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47366 * 2 1 4 4 C 1.52994 * 109.47366 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47378 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00320 * 269.62285 * 5 4 3 7 7 H 1.08003 * 119.99664 * 322.08633 * 6 5 4 8 8 C 1.38814 * 120.00224 * 142.07926 * 6 5 4 9 9 N 1.31612 * 119.99890 * 157.00332 * 8 6 5 10 10 Si 1.86802 * 119.99882 * 337.00618 * 8 6 5 11 11 H 1.48498 * 109.47144 * 95.70094 * 10 8 6 12 12 H 1.48500 * 109.46950 * 215.70260 * 10 8 6 13 13 H 1.48502 * 109.47143 * 335.69990 * 10 8 6 14 14 C 1.46500 * 119.99911 * 89.62507 * 5 4 3 15 15 C 1.50699 * 109.47489 * 90.00144 * 14 5 4 16 16 C 1.34322 * 126.16534 * 94.99657 * 15 14 5 17 17 O 1.34752 * 107.11291 * 180.26229 * 16 15 14 18 18 C 1.33972 * 107.75422 * 359.57945 * 17 16 15 19 19 C 1.50696 * 125.61750 * 180.17997 * 18 17 16 20 20 N 1.30251 * 108.75764 * 0.42882 * 18 17 16 21 21 H 1.09009 * 109.47036 * 60.00152 * 1 2 3 22 22 H 1.08993 * 109.47442 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47081 * 300.00602 * 1 2 3 24 24 H 1.08998 * 109.47191 * 239.99942 * 2 1 3 25 25 H 1.09002 * 109.47263 * 119.99521 * 2 1 3 26 26 H 1.08998 * 109.47013 * 59.99833 * 3 2 1 27 27 H 1.09002 * 109.46538 * 299.99965 * 3 2 1 28 28 H 1.09008 * 109.47129 * 59.99413 * 4 3 2 29 29 H 1.09006 * 109.47326 * 300.00279 * 4 3 2 30 30 H 0.97003 * 120.00020 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47050 * 329.99489 * 14 5 4 32 32 H 1.09001 * 109.46805 * 210.00320 * 14 5 4 33 33 H 1.08008 * 126.44468 * 0.02562 * 16 15 14 34 34 H 1.08997 * 109.47206 * 270.28654 * 19 18 17 35 35 H 1.09002 * 109.47436 * 30.29157 * 19 18 17 36 36 H 1.09005 * 109.46938 * 150.28875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2945 3.4660 -1.1861 7 1 4.7189 2.9241 -2.0184 8 6 3.9883 4.8134 -1.3188 9 7 4.5950 5.5390 -2.2340 10 14 2.7152 5.5966 -0.1984 11 1 3.3982 6.2440 0.9504 12 1 1.9486 6.6170 -0.9575 13 1 1.7868 4.5515 0.3027 14 6 4.2942 3.5178 1.2684 15 6 5.7145 3.2822 1.7135 16 6 6.7617 4.0916 1.4840 17 8 7.8415 3.5111 2.0433 18 6 7.4412 2.3660 2.6120 19 6 8.3263 1.3989 3.3551 20 7 6.1620 2.2238 2.4121 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9284 -0.8891 29 1 3.9330 0.9288 0.8909 30 1 4.3808 6.4805 -2.3270 31 1 3.6083 3.1359 2.0246 32 1 4.1280 4.5866 1.1340 33 1 6.7426 5.0292 0.9483 34 1 8.7322 0.6673 2.6565 35 1 9.1442 1.9436 3.8268 36 1 7.7426 0.8861 4.1198 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206074834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:50 Heat of formation + Delta-G solvation = 7.741065 kcal Electronic energy + Delta-G solvation = -17271.211599 eV Core-core repulsion = 14563.637497 eV Total energy + Delta-G solvation = -2707.574102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.16071 -38.46865 -35.98237 -35.30959 -33.74846 -32.92605 -30.22649 -28.89380 -27.34288 -25.66356 -22.99027 -22.40730 -22.15005 -21.44406 -19.04728 -17.82831 -17.60725 -17.24090 -16.25257 -15.99720 -15.69148 -15.06875 -15.00577 -14.59492 -14.30703 -14.09486 -13.81832 -13.54659 -13.44740 -13.21669 -12.85025 -12.68887 -12.23043 -12.16120 -11.98278 -11.84726 -11.75081 -11.55308 -11.42404 -11.30963 -10.67773 -9.63711 -8.86233 -8.22826 -5.61447 0.59720 1.27223 1.40739 1.52472 1.73564 1.93518 2.39031 3.04269 3.19336 3.40283 3.96085 4.11281 4.14365 4.25591 4.39741 4.46181 4.53992 4.59457 4.68190 4.73143 4.83761 4.88590 4.96030 5.02208 5.04045 5.06443 5.10617 5.17386 5.38646 5.47389 5.51183 5.58681 5.91927 6.15072 6.85984 6.92786 7.56773 8.02560 8.96623 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.009883 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.887461 B = 2832.469353 C = 4091.491607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.129 4.129 4 C 0.153 3.847 5 N -0.604 5.604 6 C -0.257 4.257 7 H 0.036 0.964 8 C -0.007 4.007 9 N -0.940 5.940 10 Si 0.927 3.073 11 H -0.270 1.270 12 H -0.305 1.305 13 H -0.254 1.254 14 C 0.212 3.788 15 C -0.030 4.030 16 C -0.081 4.081 17 O -0.214 6.214 18 C 0.175 3.825 19 C -0.048 4.048 20 N -0.502 5.502 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.265 0.735 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.212 0.788 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -8.401 11.595 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.169 4.169 4 C 0.028 3.972 5 N -0.325 5.325 6 C -0.387 4.387 7 H 0.053 0.947 8 C -0.205 4.205 9 N -0.583 5.583 10 Si 0.755 3.245 11 H -0.197 1.197 12 H -0.233 1.233 13 H -0.178 1.178 14 C 0.086 3.914 15 C -0.151 4.151 16 C -0.152 4.152 17 O -0.102 6.102 18 C -0.033 4.033 19 C -0.105 4.105 20 N -0.233 5.233 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.228 0.772 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.683 -8.779 11.712 14.653 hybrid contribution -0.124 1.622 -0.589 1.730 sum 0.559 -7.157 11.124 13.239 Atomic orbital electron populations 1.21743 0.95124 1.02109 1.01478 1.21446 0.96460 0.95391 1.02123 1.22057 0.97154 0.97220 1.00479 1.20987 0.92608 0.84298 0.99270 1.44187 1.75038 1.12610 1.00688 1.18560 1.35588 0.93397 0.91146 0.94654 1.25954 0.99054 0.97191 0.98258 1.69997 1.42286 1.07416 1.38649 0.86096 0.81673 0.78154 0.78598 1.19656 1.23343 1.17812 1.19551 0.87720 0.96419 0.87689 1.22908 1.00455 0.91858 0.99864 1.24862 0.84055 1.02347 1.03940 1.84376 1.37486 1.32635 1.55706 1.27488 0.91418 0.87087 0.97283 1.20485 0.96990 0.93968 0.99059 1.70281 1.10264 1.24820 1.17966 0.93510 0.91194 0.92886 0.92110 0.91266 0.93404 0.94175 0.94434 0.92713 0.92605 0.91042 0.92596 0.77176 0.87771 0.87231 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.12 -3.26 5.93 30.59 0.18 -3.08 16 3 C -0.13 -4.75 5.54 30.59 0.17 -4.58 16 4 C 0.15 6.37 5.67 86.38 0.49 6.86 16 5 N -0.60 -29.28 2.05 -706.34 -1.45 -30.73 16 6 C -0.26 -14.63 9.90 84.03 0.83 -13.80 16 7 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 8 C -0.01 -0.41 5.29 84.86 0.45 0.04 16 9 N -0.94 -57.36 13.97 21.65 0.30 -57.06 16 10 Si 0.93 44.80 25.10 68.60 1.72 46.53 16 11 H -0.27 -12.26 6.68 99.48 0.66 -11.60 16 12 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 13 H -0.25 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.21 9.51 5.05 85.63 0.43 9.94 16 15 C -0.03 -1.28 6.69 41.26 0.28 -1.00 16 16 C -0.08 -3.33 12.08 66.92 0.81 -2.52 16 17 O -0.21 -7.82 10.78 -3.78 -0.04 -7.86 16 18 C 0.17 5.67 8.34 88.34 0.74 6.41 16 19 C -0.05 -0.87 10.51 71.23 0.75 -0.12 16 20 N -0.50 -19.58 11.29 -291.99 -3.30 -22.88 16 21 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.61 8.04 -2.38 -0.02 1.59 16 29 H 0.05 2.16 8.08 -2.38 -0.02 2.14 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.07 2.94 8.07 -2.39 -0.02 2.92 16 32 H 0.06 2.61 3.37 -2.39 -0.01 2.60 16 33 H 0.21 8.40 8.06 -2.91 -0.02 8.38 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -68.19 302.41 4.08 -64.11 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.00 Total: 12.59 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.84 Total: -4.71 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -4.44 Total: -110.67 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.04 Total: -7.86 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.72 Total: 46.53 kcal Total: -68.19 4.08 -64.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206074834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.855 kcal (2) G-P(sol) polarization free energy of solvation -68.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds