Wall clock time and date at job start Sun Mar 29 2020 22:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46962 * 2 1 4 4 C 1.53000 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47367 * 179.97438 * 4 3 2 6 6 C 1.36943 * 119.99717 * 90.00016 * 5 4 3 7 7 H 1.08000 * 120.00247 * 326.12714 * 6 5 4 8 8 C 1.38809 * 119.99891 * 146.12622 * 6 5 4 9 9 N 1.31628 * 120.00058 * 336.80542 * 8 6 5 10 10 Si 1.86801 * 120.00111 * 156.80297 * 8 6 5 11 11 H 1.48495 * 109.47414 * 90.00017 * 10 8 6 12 12 H 1.48503 * 109.47314 * 210.00326 * 10 8 6 13 13 H 1.48495 * 109.46830 * 329.99932 * 10 8 6 14 14 C 1.46500 * 120.00397 * 269.99730 * 5 4 3 15 15 C 1.50704 * 109.46773 * 92.07696 * 14 5 4 16 16 C 1.41379 * 126.79972 * 94.71515 * 15 14 5 17 17 C 1.35451 * 103.98579 * 179.88717 * 16 15 14 18 18 C 1.50701 * 126.77916 * 180.09750 * 17 16 15 19 19 O 1.34050 * 106.44413 * 0.37066 * 17 16 15 20 20 N 1.20922 * 111.56612 * 359.74246 * 19 17 16 21 21 H 1.09003 * 109.47233 * 299.99673 * 1 2 3 22 22 H 1.08995 * 109.47288 * 60.00006 * 1 2 3 23 23 H 1.09003 * 109.47036 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46765 * 239.99720 * 2 1 3 25 25 H 1.09003 * 109.47201 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47609 * 60.00237 * 3 2 1 27 27 H 1.09003 * 109.47429 * 300.00186 * 3 2 1 28 28 H 1.09004 * 109.47220 * 59.99594 * 4 3 2 29 29 H 1.09003 * 109.46903 * 300.00353 * 4 3 2 30 30 H 0.97001 * 119.99771 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47633 * 212.07702 * 14 5 4 32 32 H 1.09002 * 109.46676 * 332.08391 * 14 5 4 33 33 H 1.07995 * 128.00689 * 0.02562 * 16 15 14 34 34 H 1.08995 * 109.46948 * 180.30157 * 18 17 16 35 35 H 1.08996 * 109.46755 * 300.29896 * 18 17 16 36 36 H 1.09000 * 109.46724 * 60.30203 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.2870 3.4696 1.1844 7 1 3.6617 3.2641 2.0407 8 6 5.3225 4.3884 1.2858 9 7 6.3419 4.3253 0.4555 10 14 5.2693 5.7145 2.6004 11 1 5.9244 5.2138 3.8354 12 1 5.9849 6.9218 2.1150 13 1 3.8561 6.0621 2.8958 14 6 4.3019 3.5140 -1.2702 15 6 3.0616 4.2660 -1.6792 16 6 2.7723 5.6258 -1.4222 17 6 1.5567 5.8147 -1.9891 18 6 0.7632 7.0956 -2.0166 19 8 1.1963 4.6358 -2.5156 20 7 2.0420 3.7908 -2.3342 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 0.9288 -0.8908 29 1 3.9337 0.9285 0.8891 30 1 7.0654 4.9676 0.5262 31 1 5.1284 4.2144 -1.1501 32 1 4.5537 2.7832 -2.0388 33 1 3.3808 6.3475 -0.8976 34 1 -0.1774 6.9290 -2.5415 35 1 0.5575 7.4174 -0.9957 36 1 1.3356 7.8665 -2.5324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206819396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:44 Heat of formation + Delta-G solvation = 61.804677 kcal Electronic energy + Delta-G solvation = -17525.098143 eV Core-core repulsion = 14819.868415 eV Total energy + Delta-G solvation = -2705.229728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.06018 -36.50434 -34.27099 -33.18885 -32.53054 -31.17407 -28.16751 -27.24059 -26.26620 -23.91647 -22.29459 -21.16126 -20.18615 -19.24008 -16.99048 -16.57549 -16.37939 -14.86459 -14.78842 -14.00426 -13.70995 -13.52919 -13.31329 -13.23186 -13.00668 -12.46619 -12.10847 -11.99706 -11.75280 -11.26951 -11.10012 -10.89548 -10.64069 -10.59711 -10.44614 -10.32666 -10.08213 -9.85761 -9.78765 -9.09018 -8.57416 -8.53142 -6.70844 -5.86766 -3.39742 2.17575 3.14721 3.31360 3.38957 3.43246 3.80264 4.43929 5.10494 5.14388 5.31017 5.39234 5.46232 5.56829 5.58554 5.65826 5.74941 5.85318 5.99095 6.06267 6.21230 6.25416 6.34600 6.42857 6.45580 6.47611 6.68857 6.71074 6.81516 6.96788 7.06033 7.26536 7.52338 7.77163 8.42539 9.10261 9.13498 9.74460 10.31111 11.14566 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.011298 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.779068 B = 2477.688777 C = 3735.063151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.143 4.143 4 C 0.149 3.851 5 N -0.573 5.573 6 C -0.253 4.253 7 H 0.061 0.939 8 C 0.011 3.989 9 N -0.887 5.887 10 Si 0.893 3.107 11 H -0.285 1.285 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.205 3.795 15 C 0.037 3.963 16 C -0.211 4.211 17 C -0.067 4.067 18 C -0.065 4.065 19 O 0.076 5.924 20 N -0.380 5.380 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.256 0.744 31 H 0.121 0.879 32 H 0.042 0.958 33 H 0.160 0.840 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.615 1.525 -3.775 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.183 4.183 4 C 0.023 3.977 5 N -0.292 5.292 6 C -0.383 4.383 7 H 0.079 0.921 8 C -0.189 4.189 9 N -0.530 5.530 10 Si 0.722 3.278 11 H -0.212 1.212 12 H -0.213 1.213 13 H -0.204 1.204 14 C 0.077 3.923 15 C -0.124 4.124 16 C -0.232 4.232 17 C -0.131 4.131 18 C -0.122 4.122 19 O 0.014 5.986 20 N -0.090 5.090 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.138 0.862 32 H 0.060 0.940 33 H 0.177 0.823 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.746 0.419 -4.276 9.745 hybrid contribution 0.288 1.484 1.182 1.919 sum -8.459 1.903 -3.094 9.205 Atomic orbital electron populations 1.21750 0.96794 1.00465 1.01515 1.21471 0.95040 0.98296 1.01049 1.22252 0.99352 0.94704 1.02031 1.20932 0.91347 0.86525 0.98913 1.43718 1.75535 1.08311 1.01683 1.19025 1.09344 1.19908 0.90033 0.92096 1.25045 0.94223 1.01469 0.98171 1.69944 1.07324 1.36146 1.39573 0.86449 0.77793 0.81914 0.81649 1.21151 1.21311 1.20352 1.19628 0.90281 0.95876 0.86510 1.25342 0.98896 0.93013 0.95145 1.22423 0.97206 0.97943 1.05666 1.24286 0.97108 0.90390 1.01337 1.20164 0.98906 0.89697 1.03475 1.84732 1.38903 1.15068 1.59860 1.73726 1.00921 1.13389 1.20995 0.93209 0.93037 0.93587 0.92701 0.92693 0.93038 0.91608 0.94832 0.93371 0.93358 0.86183 0.93953 0.82254 0.90722 0.89962 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.14 -2.87 5.54 -26.73 -0.15 -3.02 16 4 C 0.15 3.30 5.71 -4.04 -0.02 3.28 16 5 N -0.57 -14.45 2.44 -174.61 -0.43 -14.87 16 6 C -0.25 -6.86 9.48 -15.06 -0.14 -7.00 16 7 H 0.06 1.67 7.93 -52.49 -0.42 1.26 16 8 C 0.01 0.28 4.97 -17.43 -0.09 0.20 16 9 N -0.89 -24.62 11.30 55.49 0.63 -24.00 16 10 Si 0.89 20.99 29.61 -169.99 -5.03 15.96 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.21 4.97 5.94 -5.19 -0.03 4.94 16 15 C 0.04 0.84 6.77 -82.10 -0.56 0.28 16 16 C -0.21 -4.23 11.06 -39.38 -0.44 -4.67 16 17 C -0.07 -1.16 7.49 -35.30 -0.26 -1.42 16 18 C -0.06 -0.74 10.45 36.01 0.38 -0.37 16 19 O 0.08 1.46 11.20 17.15 0.19 1.65 16 20 N -0.38 -8.18 10.51 33.42 0.35 -7.83 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.41 6.36 -51.93 -0.33 1.08 16 28 H 0.03 0.72 7.88 -51.93 -0.41 0.31 16 29 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.12 3.16 5.31 -51.93 -0.28 2.88 16 32 H 0.04 1.00 7.87 -51.93 -0.41 0.59 16 33 H 0.16 3.11 8.06 -52.49 -0.42 2.68 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -29.11 302.64 -6.45 -35.56 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.62 Total: 0.64 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.10 Total: -11.67 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.55 Total: -46.70 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.19 Total: 1.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.11 -6.45 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206819396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.361 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds