Wall clock time and date at job start Sun Mar 29 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46962 * 2 1 4 4 C 1.53000 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47367 * 179.97438 * 4 3 2 6 6 C 1.36943 * 119.99717 * 90.00016 * 5 4 3 7 7 H 1.08000 * 120.00247 * 326.12714 * 6 5 4 8 8 C 1.38809 * 119.99891 * 146.12622 * 6 5 4 9 9 N 1.31628 * 120.00058 * 336.80542 * 8 6 5 10 10 Si 1.86801 * 120.00111 * 156.80297 * 8 6 5 11 11 H 1.48495 * 109.47414 * 90.00017 * 10 8 6 12 12 H 1.48503 * 109.47314 * 210.00326 * 10 8 6 13 13 H 1.48495 * 109.46830 * 329.99932 * 10 8 6 14 14 C 1.46500 * 120.00397 * 269.99730 * 5 4 3 15 15 C 1.50704 * 109.46773 * 92.07696 * 14 5 4 16 16 C 1.41379 * 126.79972 * 94.71515 * 15 14 5 17 17 C 1.35451 * 103.98579 * 179.88717 * 16 15 14 18 18 C 1.50701 * 126.77916 * 180.09750 * 17 16 15 19 19 O 1.34050 * 106.44413 * 0.37066 * 17 16 15 20 20 N 1.20922 * 111.56612 * 359.74246 * 19 17 16 21 21 H 1.09003 * 109.47233 * 299.99673 * 1 2 3 22 22 H 1.08995 * 109.47288 * 60.00006 * 1 2 3 23 23 H 1.09003 * 109.47036 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46765 * 239.99720 * 2 1 3 25 25 H 1.09003 * 109.47201 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47609 * 60.00237 * 3 2 1 27 27 H 1.09003 * 109.47429 * 300.00186 * 3 2 1 28 28 H 1.09004 * 109.47220 * 59.99594 * 4 3 2 29 29 H 1.09003 * 109.46903 * 300.00353 * 4 3 2 30 30 H 0.97001 * 119.99771 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47633 * 212.07702 * 14 5 4 32 32 H 1.09002 * 109.46676 * 332.08391 * 14 5 4 33 33 H 1.07995 * 128.00689 * 0.02562 * 16 15 14 34 34 H 1.08995 * 109.46948 * 180.30157 * 18 17 16 35 35 H 1.08996 * 109.46755 * 300.29896 * 18 17 16 36 36 H 1.09000 * 109.46724 * 60.30203 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.2870 3.4696 1.1844 7 1 3.6617 3.2641 2.0407 8 6 5.3225 4.3884 1.2858 9 7 6.3419 4.3253 0.4555 10 14 5.2693 5.7145 2.6004 11 1 5.9244 5.2138 3.8354 12 1 5.9849 6.9218 2.1150 13 1 3.8561 6.0621 2.8958 14 6 4.3019 3.5140 -1.2702 15 6 3.0616 4.2660 -1.6792 16 6 2.7723 5.6258 -1.4222 17 6 1.5567 5.8147 -1.9891 18 6 0.7632 7.0956 -2.0166 19 8 1.1963 4.6358 -2.5156 20 7 2.0420 3.7908 -2.3342 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 0.9288 -0.8908 29 1 3.9337 0.9285 0.8891 30 1 7.0654 4.9676 0.5262 31 1 5.1284 4.2144 -1.1501 32 1 4.5537 2.7832 -2.0388 33 1 3.3808 6.3475 -0.8976 34 1 -0.1774 6.9290 -2.5415 35 1 0.5575 7.4174 -0.9957 36 1 1.3356 7.8665 -2.5324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206819396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:43 Heat of formation + Delta-G solvation = 46.527975 kcal Electronic energy + Delta-G solvation = -17525.760590 eV Core-core repulsion = 14819.868415 eV Total energy + Delta-G solvation = -2705.892175 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.66354 -38.32486 -35.81530 -34.76147 -34.04828 -33.02372 -29.79092 -28.47537 -28.17261 -25.66372 -23.89643 -22.77588 -21.79912 -20.87913 -18.76000 -18.28357 -18.00636 -16.83621 -16.32366 -15.65288 -15.48524 -15.24401 -14.75993 -14.46700 -14.03994 -13.91983 -13.69331 -13.35664 -13.16624 -13.08964 -12.82810 -12.66208 -12.41152 -12.17858 -12.10310 -11.95456 -11.80589 -11.59439 -11.40190 -10.76025 -10.55002 -10.04231 -8.71109 -7.89846 -5.48163 0.71435 1.41757 1.46512 1.50635 1.56840 2.44302 2.49212 3.16574 3.60717 3.67499 3.81748 4.10290 4.22351 4.34885 4.38003 4.46642 4.50687 4.67778 4.75982 4.82243 4.85898 4.94387 4.99552 5.00665 5.03035 5.12554 5.17426 5.34255 5.37498 5.44381 5.54305 5.59693 5.64806 6.39062 7.07281 7.57687 7.75207 8.29689 9.08997 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.011298 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.779068 B = 2477.688777 C = 3735.063151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.128 4.128 4 C 0.146 3.854 5 N -0.588 5.588 6 C -0.268 4.268 7 H 0.051 0.949 8 C -0.028 4.028 9 N -0.913 5.913 10 Si 0.954 3.046 11 H -0.284 1.284 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.212 3.788 15 C 0.016 3.984 16 C -0.243 4.243 17 C -0.038 4.038 18 C -0.064 4.064 19 O 0.081 5.919 20 N -0.395 5.395 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.257 0.743 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.160 0.840 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 2.410 -3.758 11.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.168 4.168 4 C 0.021 3.979 5 N -0.308 5.308 6 C -0.398 4.398 7 H 0.069 0.931 8 C -0.225 4.225 9 N -0.557 5.557 10 Si 0.781 3.219 11 H -0.210 1.210 12 H -0.208 1.208 13 H -0.200 1.200 14 C 0.084 3.916 15 C -0.145 4.145 16 C -0.265 4.265 17 C -0.102 4.102 18 C -0.121 4.121 19 O 0.019 5.981 20 N -0.104 5.104 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.177 0.823 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.566 1.285 -4.266 11.467 hybrid contribution 0.816 1.214 1.124 1.844 sum -9.750 2.498 -3.142 10.544 Atomic orbital electron populations 1.21707 0.95028 1.02106 1.01236 1.21440 0.96566 0.95538 1.01875 1.22049 0.97449 0.97046 1.00275 1.21034 0.92859 0.85312 0.98709 1.43887 1.76060 1.09387 1.01485 1.19122 1.09315 1.20820 0.90518 0.93140 1.25682 0.93737 1.02892 1.00207 1.70053 1.07802 1.36724 1.41075 0.85508 0.77728 0.79445 0.79198 1.21045 1.20774 1.20011 1.19324 0.90824 0.95322 0.86112 1.25048 0.98662 0.94179 0.96596 1.22497 0.99029 0.97170 1.07842 1.25160 0.96127 0.90977 0.97894 1.20495 0.99524 0.86904 1.05212 1.84694 1.38151 1.15728 1.59558 1.73692 1.01000 1.14331 1.21393 0.93318 0.93509 0.90984 0.91920 0.91818 0.94966 0.93005 0.94462 0.93960 0.93402 0.88395 0.94531 0.82259 0.88234 0.88410 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.13 16 2 C -0.12 -3.63 5.93 30.59 0.18 -3.45 16 3 C -0.13 -5.16 5.54 30.59 0.17 -5.00 16 4 C 0.15 6.62 5.71 86.38 0.49 7.12 16 5 N -0.59 -30.49 2.44 -706.34 -1.72 -32.21 16 6 C -0.27 -14.82 9.48 84.03 0.80 -14.03 16 7 H 0.05 2.84 7.93 -2.91 -0.02 2.82 16 8 C -0.03 -1.50 4.97 84.86 0.42 -1.08 16 9 N -0.91 -51.72 11.30 21.65 0.24 -51.47 16 10 Si 0.95 43.40 29.61 68.60 2.03 45.43 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 14 C 0.21 10.64 5.94 85.63 0.51 11.15 16 15 C 0.02 0.71 6.77 43.58 0.29 1.00 16 16 C -0.24 -9.69 11.06 22.40 0.25 -9.44 16 17 C -0.04 -1.21 7.49 25.04 0.19 -1.02 16 18 C -0.06 -1.22 10.45 71.24 0.74 -0.47 16 19 O 0.08 3.01 11.20 71.54 0.80 3.81 16 20 N -0.40 -16.97 10.51 -49.55 -0.52 -17.49 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 2.23 6.36 -2.39 -0.02 2.21 16 28 H 0.04 1.62 7.88 -2.38 -0.02 1.61 16 29 H 0.04 1.92 8.04 -2.39 -0.02 1.90 16 30 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 31 H 0.10 5.37 5.31 -2.39 -0.01 5.36 16 32 H 0.04 1.80 7.87 -2.39 -0.02 1.78 16 33 H 0.16 6.22 8.06 -2.91 -0.02 6.20 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -63.55 302.64 6.64 -56.91 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.04 Total: 13.38 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.76 Total: -18.36 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -2.00 Total: -101.17 kcal Atomic # 8 Polarization: 3.01 SS G_CDS: 0.80 Total: 3.81 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -63.55 6.64 -56.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206819396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.440 kcal (2) G-P(sol) polarization free energy of solvation -63.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds