Wall clock time and date at job start Sun Mar 29 2020 22:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47295 * 2 1 4 4 C 1.52999 * 109.47012 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46991 * 179.31400 * 4 3 2 6 6 C 1.46907 * 110.99840 * 287.83185 * 5 4 3 7 7 C 1.50697 * 109.47034 * 298.87271 * 6 5 4 8 8 H 1.07995 * 120.00185 * 4.78570 * 7 6 5 9 9 C 1.37875 * 119.99750 * 184.79021 * 7 6 5 10 10 N 1.31511 * 120.00407 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99932 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47225 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47183 * 119.99864 * 11 9 7 14 14 H 1.48504 * 109.47512 * 240.00148 * 11 9 7 15 15 C 1.46894 * 111.00229 * 163.87842 * 5 4 3 16 16 C 1.50697 * 109.47359 * 189.99376 * 15 5 4 17 17 C 1.41387 * 126.79836 * 94.71270 * 16 15 5 18 18 C 1.35449 * 103.98274 * 180.26499 * 17 16 15 19 19 O 1.34037 * 106.45163 * 359.97438 * 18 17 16 20 20 N 1.20922 * 111.56537 * 0.02562 * 19 18 17 21 21 H 1.08994 * 109.47401 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47239 * 300.00791 * 1 2 3 23 23 H 1.09000 * 109.47253 * 59.99901 * 1 2 3 24 24 H 1.08997 * 109.46849 * 239.99396 * 2 1 3 25 25 H 1.09004 * 109.46587 * 119.99855 * 2 1 3 26 26 H 1.08997 * 109.47264 * 59.99232 * 3 2 1 27 27 H 1.09002 * 109.46539 * 300.00154 * 3 2 1 28 28 H 1.08992 * 109.47392 * 59.31073 * 4 3 2 29 29 H 1.09003 * 109.46720 * 299.30591 * 4 3 2 30 30 H 1.09000 * 109.46937 * 58.87372 * 6 5 4 31 31 H 1.08997 * 109.47262 * 178.86939 * 6 5 4 32 32 H 0.97001 * 120.00276 * 180.02562 * 10 9 7 33 33 H 1.08999 * 109.47068 * 69.99786 * 15 5 4 34 34 H 1.09001 * 109.47257 * 309.99774 * 15 5 4 35 35 H 1.07998 * 128.00409 * 0.24354 * 17 16 15 36 36 H 1.08004 * 126.77358 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8273 -0.0172 6 6 3.8387 3.4481 -1.3302 7 6 4.5951 2.6796 -2.3829 8 1 5.1180 1.7726 -2.1181 9 6 4.6195 3.1345 -3.6842 10 7 3.9831 4.2393 -4.0067 11 14 5.5576 2.1823 -4.9891 12 1 6.1840 0.9849 -4.3736 13 1 4.6212 1.7563 -6.0601 14 1 6.6138 3.0490 -5.5709 15 6 5.4775 2.8890 0.3623 16 6 5.8791 4.3261 0.5730 17 6 5.9034 5.0274 1.8004 18 6 6.3238 6.2691 1.4596 19 8 6.5187 6.2532 0.1336 20 7 6.2672 5.1693 -0.3397 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9330 0.9181 -0.8845 29 1 3.9337 0.9392 0.8953 30 1 2.7743 3.4337 -1.5643 31 1 4.1921 4.4790 -1.3088 32 1 4.0000 4.5592 -4.9223 33 1 6.0853 2.4546 -0.4314 34 1 5.6313 2.3297 1.2851 35 1 5.6460 4.6585 2.7822 36 1 6.4726 7.1067 2.1250 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209564818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:59 Heat of formation + Delta-G solvation = 53.853145 kcal Electronic energy + Delta-G solvation = -17260.082062 eV Core-core repulsion = 14554.507530 eV Total energy + Delta-G solvation = -2705.574532 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.31775 -37.37331 -34.55354 -33.23295 -32.17620 -31.05779 -28.58515 -27.37671 -24.98174 -23.28270 -22.48270 -21.33285 -20.23157 -19.51937 -17.17628 -16.96253 -16.28351 -15.22883 -14.67968 -14.58872 -14.41327 -13.78553 -13.45186 -12.96769 -12.60051 -12.28873 -12.08112 -12.05578 -11.24691 -11.11865 -10.89309 -10.73505 -10.61481 -10.52222 -10.45581 -10.10071 -9.97966 -9.84580 -9.59099 -9.42703 -9.03373 -8.32630 -7.18150 -5.93878 -4.00966 2.08151 2.86235 3.31330 3.39216 3.41366 3.82355 4.47535 4.79116 5.04238 5.17957 5.36492 5.38272 5.53853 5.55034 5.65994 5.80239 5.86181 5.94696 6.12147 6.14682 6.19302 6.25355 6.34272 6.47572 6.51679 6.58312 6.65067 6.90230 6.95431 7.31297 7.62502 7.97751 8.06098 8.29144 8.35536 8.98357 9.06324 9.64196 11.12248 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.010287 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.341584 B = 2721.207996 C = 4360.293043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.061 3.939 5 N -0.540 5.540 6 C 0.183 3.817 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.069 3.931 10 N -0.887 5.887 11 Si 0.885 3.115 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.135 3.865 16 C 0.034 3.966 17 C -0.224 4.224 18 C -0.087 4.087 19 O 0.097 5.903 20 N -0.330 5.330 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.028 0.972 31 H 0.041 0.959 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.164 0.836 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -1.930 11.925 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.068 4.068 5 N -0.264 5.264 6 C 0.057 3.943 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.134 4.134 10 N -0.525 5.525 11 Si 0.713 3.287 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.006 3.994 16 C -0.126 4.126 17 C -0.246 4.246 18 C -0.169 4.169 19 O 0.028 5.972 20 N -0.032 5.032 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.181 0.819 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.107 -1.632 10.788 10.911 hybrid contribution 0.746 -0.965 -0.531 1.330 sum 0.853 -2.597 10.257 10.615 Atomic orbital electron populations 1.21750 0.96409 1.00772 1.01729 1.21483 0.95335 0.97769 1.01401 1.21502 0.95513 0.95320 1.02369 1.21943 0.94930 0.90138 0.99751 1.62543 1.13958 1.16731 1.33189 1.19846 0.96696 0.95622 0.82116 1.21605 1.32677 1.09542 0.94223 0.92791 1.24882 0.95263 0.94766 0.98458 1.69949 1.42477 1.21397 1.18708 0.86664 0.79937 0.80051 0.82079 1.19986 1.21070 1.20991 1.20191 0.91741 0.87430 1.00067 1.23546 1.01354 0.98997 0.88668 1.22641 1.07599 0.94040 1.00305 1.25860 1.04544 1.00327 0.86137 1.84915 1.63647 1.28391 1.20287 1.74123 1.15628 0.91560 1.21877 0.93425 0.93077 0.92709 0.92166 0.92747 0.92442 0.91303 0.93287 0.93352 0.95430 0.94074 0.93038 0.92153 0.91028 0.81889 0.77673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.11 -1.91 5.28 -26.73 -0.14 -2.05 16 4 C 0.06 1.16 4.80 -3.83 -0.02 1.14 16 5 N -0.54 -11.71 4.66 -237.53 -1.11 -12.81 16 6 C 0.18 4.82 4.79 -4.97 -0.02 4.80 16 7 C -0.54 -15.16 7.33 -34.44 -0.25 -15.42 16 8 H 0.05 1.50 5.95 -52.49 -0.31 1.19 16 9 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 10 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 11 Si 0.88 22.21 29.54 -169.99 -5.02 17.18 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.13 2.70 5.37 -4.98 -0.03 2.67 16 16 C 0.03 0.68 6.07 -82.10 -0.50 0.18 16 17 C -0.22 -3.43 11.12 -39.38 -0.44 -3.87 16 18 C -0.09 -1.21 12.30 29.74 0.37 -0.84 16 19 O 0.10 1.79 11.20 17.18 0.19 1.98 16 20 N -0.33 -7.32 11.01 33.42 0.37 -6.96 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.39 6.73 -51.93 -0.35 1.04 16 28 H 0.05 1.04 6.16 -51.93 -0.32 0.73 16 29 H 0.05 0.80 7.81 -51.93 -0.41 0.40 16 30 H 0.03 0.78 6.66 -51.93 -0.35 0.44 16 31 H 0.04 1.21 6.41 -51.93 -0.33 0.87 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 1.36 6.58 -51.93 -0.34 1.01 16 34 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 35 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 36 H 0.21 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 296.80 15.07 4.47 4.47 Total: -1.00 -32.07 296.80 -6.61 -38.68 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.33 Total: -1.39 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.92 Total: -14.93 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.00 Total: -46.00 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.19 Total: 1.98 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.07 -6.61 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209564818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.538 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds