Wall clock time and date at job start Sun Mar 29 2020 22:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47295 * 2 1 4 4 C 1.52999 * 109.47012 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46991 * 179.31400 * 4 3 2 6 6 C 1.46907 * 110.99840 * 287.83185 * 5 4 3 7 7 C 1.50697 * 109.47034 * 298.87271 * 6 5 4 8 8 H 1.07995 * 120.00185 * 4.78570 * 7 6 5 9 9 C 1.37875 * 119.99750 * 184.79021 * 7 6 5 10 10 N 1.31511 * 120.00407 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99932 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47225 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47183 * 119.99864 * 11 9 7 14 14 H 1.48504 * 109.47512 * 240.00148 * 11 9 7 15 15 C 1.46894 * 111.00229 * 163.87842 * 5 4 3 16 16 C 1.50697 * 109.47359 * 189.99376 * 15 5 4 17 17 C 1.41387 * 126.79836 * 94.71270 * 16 15 5 18 18 C 1.35449 * 103.98274 * 180.26499 * 17 16 15 19 19 O 1.34037 * 106.45163 * 359.97438 * 18 17 16 20 20 N 1.20922 * 111.56537 * 0.02562 * 19 18 17 21 21 H 1.08994 * 109.47401 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47239 * 300.00791 * 1 2 3 23 23 H 1.09000 * 109.47253 * 59.99901 * 1 2 3 24 24 H 1.08997 * 109.46849 * 239.99396 * 2 1 3 25 25 H 1.09004 * 109.46587 * 119.99855 * 2 1 3 26 26 H 1.08997 * 109.47264 * 59.99232 * 3 2 1 27 27 H 1.09002 * 109.46539 * 300.00154 * 3 2 1 28 28 H 1.08992 * 109.47392 * 59.31073 * 4 3 2 29 29 H 1.09003 * 109.46720 * 299.30591 * 4 3 2 30 30 H 1.09000 * 109.46937 * 58.87372 * 6 5 4 31 31 H 1.08997 * 109.47262 * 178.86939 * 6 5 4 32 32 H 0.97001 * 120.00276 * 180.02562 * 10 9 7 33 33 H 1.08999 * 109.47068 * 69.99786 * 15 5 4 34 34 H 1.09001 * 109.47257 * 309.99774 * 15 5 4 35 35 H 1.07998 * 128.00409 * 0.24354 * 17 16 15 36 36 H 1.08004 * 126.77358 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8273 -0.0172 6 6 3.8387 3.4481 -1.3302 7 6 4.5951 2.6796 -2.3829 8 1 5.1180 1.7726 -2.1181 9 6 4.6195 3.1345 -3.6842 10 7 3.9831 4.2393 -4.0067 11 14 5.5576 2.1823 -4.9891 12 1 6.1840 0.9849 -4.3736 13 1 4.6212 1.7563 -6.0601 14 1 6.6138 3.0490 -5.5709 15 6 5.4775 2.8890 0.3623 16 6 5.8791 4.3261 0.5730 17 6 5.9034 5.0274 1.8004 18 6 6.3238 6.2691 1.4596 19 8 6.5187 6.2532 0.1336 20 7 6.2672 5.1693 -0.3397 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9330 0.9181 -0.8845 29 1 3.9337 0.9392 0.8953 30 1 2.7743 3.4337 -1.5643 31 1 4.1921 4.4790 -1.3088 32 1 4.0000 4.5592 -4.9223 33 1 6.0853 2.4546 -0.4314 34 1 5.6313 2.3297 1.2851 35 1 5.6460 4.6585 2.7822 36 1 6.4726 7.1067 2.1250 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209564818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:59 Heat of formation + Delta-G solvation = 32.106100 kcal Electronic energy + Delta-G solvation = -17261.025085 eV Core-core repulsion = 14554.507530 eV Total energy + Delta-G solvation = -2706.517555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.72304 -39.07535 -35.88458 -34.94524 -34.02869 -32.39219 -29.99035 -29.36389 -26.69039 -25.08825 -23.81715 -22.67424 -21.56966 -21.24863 -18.72399 -18.41924 -18.23493 -16.92932 -16.40881 -16.12691 -15.91885 -15.45266 -14.84867 -14.35626 -14.15974 -13.74039 -13.59354 -13.37541 -13.11722 -12.88897 -12.72545 -12.47431 -12.11023 -12.06879 -11.87135 -11.81586 -11.67862 -11.54152 -11.29933 -10.86152 -10.58776 -10.36430 -9.05188 -8.14190 -6.30506 0.87356 1.30029 1.31806 1.42174 1.49081 2.35165 2.72000 3.12404 3.34149 3.64373 3.84116 4.11300 4.22748 4.34980 4.43625 4.53599 4.56939 4.63247 4.79870 4.87565 4.91694 5.00651 5.03312 5.11823 5.16833 5.27013 5.31908 5.36760 5.40462 5.49837 5.56033 5.78081 6.04863 6.21688 6.51094 6.87808 7.38528 7.67850 8.89602 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.010287 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.341584 B = 2721.207996 C = 4360.293043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.103 4.103 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.203 3.797 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.950 3.050 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.284 1.284 15 C 0.136 3.864 16 C 0.005 3.995 17 C -0.225 4.225 18 C -0.064 4.064 19 O 0.083 5.917 20 N -0.392 5.392 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.023 0.977 29 H 0.085 0.915 30 H -0.002 1.002 31 H 0.009 0.991 32 H 0.261 0.739 33 H 0.028 0.972 34 H 0.113 0.887 35 H 0.200 0.800 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 -2.835 14.209 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.068 4.068 5 N -0.260 5.260 6 C 0.077 3.923 7 C -0.580 4.580 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.776 3.224 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.210 1.210 15 C 0.007 3.993 16 C -0.153 4.153 17 C -0.246 4.246 18 C -0.145 4.145 19 O 0.015 5.985 20 N -0.096 5.096 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.016 0.984 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.131 0.869 35 H 0.217 0.783 36 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 0.463 -2.555 13.089 13.344 hybrid contribution 0.646 -0.626 -1.112 1.430 sum 1.108 -3.181 11.977 12.442 Atomic orbital electron populations 1.21734 0.95039 1.02104 1.01577 1.21449 0.96537 0.95410 1.02051 1.21446 0.94391 0.97337 1.00891 1.22065 0.95969 0.88531 1.00196 1.62477 1.15446 1.18139 1.29969 1.19368 0.94303 0.94289 0.84381 1.21838 1.32066 1.09296 0.94791 0.92912 1.25734 0.96335 0.95754 1.00870 1.70079 1.44126 1.23080 1.19221 0.85629 0.78599 0.78823 0.79379 1.19017 1.20098 1.20979 1.20278 0.89752 0.88586 1.00672 1.23853 1.01966 0.98951 0.90528 1.23028 1.07577 0.93894 1.00135 1.26928 1.01431 1.01591 0.84513 1.84827 1.63694 1.27226 1.22743 1.74123 1.18222 0.93090 1.24203 0.91336 0.92033 0.94130 0.93215 0.90315 0.91449 0.95169 0.95906 0.89677 0.98375 0.97238 0.92995 0.95424 0.86914 0.78303 0.71983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.12 -3.18 5.93 30.60 0.18 -3.00 16 3 C -0.10 -3.56 5.28 30.59 0.16 -3.40 16 4 C 0.06 2.27 4.80 86.30 0.41 2.68 16 5 N -0.54 -23.47 4.66 -905.39 -4.22 -27.69 16 6 C 0.20 11.24 4.79 85.55 0.41 11.65 16 7 C -0.54 -31.40 7.33 25.60 0.19 -31.21 16 8 H 0.05 3.02 5.95 -2.91 -0.02 3.00 16 9 C 0.01 0.72 5.46 84.65 0.46 1.18 16 10 N -0.92 -58.40 13.29 21.45 0.28 -58.12 16 11 Si 0.95 46.67 29.54 68.60 2.03 48.69 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 14 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 15 C 0.14 5.41 5.37 85.56 0.46 5.87 16 16 C 0.01 0.21 6.07 43.58 0.26 0.48 16 17 C -0.22 -6.28 11.12 22.40 0.25 -6.03 16 18 C -0.06 -1.59 12.30 67.17 0.83 -0.76 16 19 O 0.08 3.05 11.20 71.66 0.80 3.85 16 20 N -0.39 -17.84 11.01 -49.54 -0.55 -18.39 16 21 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.03 1.26 6.73 -2.39 -0.02 1.24 16 28 H 0.02 0.98 6.16 -2.39 -0.01 0.97 16 29 H 0.08 2.59 7.81 -2.39 -0.02 2.57 16 30 H 0.00 -0.11 6.66 -2.39 -0.02 -0.12 16 31 H 0.01 0.59 6.41 -2.39 -0.02 0.57 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.03 1.27 6.58 -2.39 -0.02 1.26 16 34 H 0.11 3.47 7.86 -2.39 -0.02 3.46 16 35 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.26 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -74.32 296.80 3.74 -70.59 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.05 Total: 6.40 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 4.33 Total: -25.33 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -4.48 Total: -104.19 kcal Atomic # 8 Polarization: 3.05 SS G_CDS: 0.80 Total: 3.85 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -74.32 3.74 -70.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209564818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.691 kcal (2) G-P(sol) polarization free energy of solvation -74.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds