Wall clock time and date at job start Sun Mar 29 2020 21:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48499 * 109.47381 * 240.00467 * 3 2 1 5 5 H 1.48502 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00085 * 3 2 1 7 7 C 1.37871 * 120.00123 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.85110 * 0.02562 * 7 2 1 9 9 C 1.53232 * 108.53595 * 231.32631 * 8 7 2 10 10 C 1.52957 * 109.40615 * 305.37003 * 9 8 7 11 11 H 1.09005 * 109.41431 * 303.56408 * 10 9 8 12 12 N 1.46499 * 109.41674 * 183.70719 * 10 9 8 13 13 C 1.34777 * 120.00199 * 154.86051 * 12 10 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10 16 16 H 1.09003 * 112.74720 * 48.45417 * 15 13 12 17 17 C 1.53506 * 113.47195 * 277.60674 * 15 13 12 18 18 C 1.53519 * 83.57521 * 219.20722 * 17 15 13 19 19 N 1.47472 * 113.47563 * 179.22625 * 15 13 12 20 20 C 1.52955 * 109.76016 * 63.62925 * 10 9 8 21 21 C 1.51269 * 120.85060 * 179.97438 * 7 2 1 22 22 H 0.96998 * 119.99644 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.63232 * 111.61038 * 8 7 2 24 24 H 1.09000 * 109.62790 * 351.03702 * 8 7 2 25 25 H 1.09003 * 109.48338 * 185.38929 * 9 8 7 26 26 H 1.09001 * 109.48531 * 65.34775 * 9 8 7 27 27 H 0.97000 * 119.99484 * 334.85148 * 12 10 9 28 28 H 1.08999 * 114.17654 * 332.85841 * 17 15 13 29 29 H 1.09002 * 114.17253 * 105.56553 * 17 15 13 30 30 H 1.08995 * 113.47742 * 271.26037 * 18 17 15 31 31 H 1.09000 * 113.47447 * 140.78600 * 18 17 15 32 32 H 1.00897 * 111.00340 * 253.47328 * 19 15 13 33 33 H 1.09009 * 109.48109 * 56.35249 * 20 10 9 34 34 H 1.08999 * 109.48679 * 176.38863 * 20 10 9 35 35 H 1.08996 * 109.62936 * 248.38988 * 21 7 2 36 36 H 1.08996 * 109.62379 * 8.96351 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 1.2678 -2.5151 -0.0017 9 6 1.8230 -3.3835 1.1322 10 6 3.3400 -3.5078 0.9810 11 1 3.5741 -3.9110 -0.0043 12 7 3.8599 -4.4092 2.0122 13 6 5.0160 -5.0712 1.8080 14 8 5.6257 -4.9209 0.7703 15 6 5.5477 -6.0032 2.8662 16 1 4.7908 -6.6935 3.2387 17 6 6.3235 -5.2854 3.9794 18 6 7.2486 -6.5069 3.8854 19 7 6.8098 -6.6645 2.4862 20 6 3.9894 -2.1314 1.1343 21 6 3.5171 -1.2164 -0.0011 22 1 -0.4849 0.8401 -0.0004 23 1 1.4200 -3.0184 -0.9564 24 1 0.2037 -2.3410 0.1579 25 1 1.3707 -4.3742 1.0862 26 1 1.5900 -2.9214 2.0915 27 1 3.3721 -4.5295 2.8419 28 1 6.7872 -4.3493 3.6682 29 1 5.7818 -5.2073 4.9220 30 1 6.9460 -7.3315 4.5309 31 1 8.3056 -6.2597 3.9838 32 1 6.6559 -7.6363 2.2628 33 1 3.7040 -1.6996 2.0936 34 1 5.0737 -2.2340 1.0899 35 1 3.8772 -1.5997 -0.9558 36 1 3.8982 -0.2079 0.1589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220095303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:49 Heat of formation + Delta-G solvation = -18.871004 kcal Electronic energy + Delta-G solvation = -17259.711383 eV Core-core repulsion = 14550.983295 eV Total energy + Delta-G solvation = -2708.728088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40215 -38.37043 -36.46383 -33.62971 -31.57352 -29.66128 -28.23256 -27.63952 -26.16730 -22.39524 -21.51258 -20.80151 -19.66443 -19.28392 -17.47866 -17.02900 -15.92702 -15.59704 -14.53007 -14.36366 -14.32145 -13.63437 -13.25139 -12.85930 -12.70275 -12.24486 -12.11831 -12.03782 -11.67531 -11.48772 -11.29951 -10.98673 -10.76845 -10.67525 -10.17952 -10.00961 -9.73973 -9.58588 -9.09775 -8.91982 -8.78364 -8.46884 -8.28905 -6.10193 -4.00666 2.93254 3.30232 3.36695 3.39282 3.41532 4.11347 4.23846 4.39860 4.64825 4.95397 4.98756 5.17010 5.18740 5.44675 5.52295 5.69519 5.81619 5.84788 5.91729 6.22119 6.49231 6.51074 6.72289 6.81087 6.90739 6.96003 6.99544 7.08258 7.27753 7.44502 7.64813 7.71922 7.78612 8.00274 8.38537 8.67104 8.96114 9.55127 10.99535 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045445 B = 0.005602 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.977217 B = 4996.753600 C = 5251.336593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.489 4.489 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.155 3.845 11 H 0.077 0.923 12 N -0.725 5.725 13 C 0.517 3.483 14 O -0.524 6.524 15 C 0.007 3.993 16 H 0.094 0.906 17 C -0.129 4.129 18 C 0.000 4.000 19 N -0.598 5.598 20 C -0.113 4.113 21 C -0.009 4.009 22 H 0.265 0.735 23 H 0.006 0.994 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.392 0.608 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.322 0.678 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.021 0.979 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 -10.938 9.983 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.508 4.508 8 C -0.025 4.025 9 C -0.152 4.152 10 C 0.052 3.948 11 H 0.095 0.905 12 N -0.376 5.376 13 C 0.301 3.699 14 O -0.399 6.399 15 C -0.108 4.108 16 H 0.112 0.888 17 C -0.167 4.167 18 C -0.131 4.131 19 N -0.223 5.223 20 C -0.152 4.152 21 C -0.047 4.047 22 H 0.075 0.925 23 H 0.025 0.975 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.225 0.775 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.749 -10.168 8.689 15.982 hybrid contribution -0.375 0.152 1.078 1.152 sum 8.374 -10.016 9.767 16.304 Atomic orbital electron populations 1.69821 1.06130 1.27056 1.49891 1.24827 0.94725 0.98545 0.94503 0.86650 0.79375 0.82952 0.79066 1.19964 1.21871 1.20034 1.20040 0.89334 0.91494 1.49949 1.19340 0.98685 0.92781 0.91713 1.21927 0.92402 0.98548 1.02323 1.21023 0.94378 0.88929 0.90435 0.90493 1.46387 1.23582 1.46212 1.21372 1.20116 0.80953 0.81175 0.87658 1.90700 1.57457 1.64507 1.27216 1.23242 0.94459 0.97774 0.95292 0.88830 1.23135 0.97273 0.98896 0.97392 1.23522 1.01479 0.97473 0.90601 1.67207 1.15535 1.18789 1.20732 1.21901 0.97317 0.95274 1.00686 1.19610 0.96577 0.94546 0.94006 0.92538 0.97543 0.92079 0.94662 0.92734 0.77497 0.88317 0.89873 0.91522 0.89327 0.86498 0.93067 0.94501 0.96100 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 12.73 55.43 0.71 -24.80 16 2 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 3 Si 0.89 21.50 26.80 -169.99 -4.56 16.94 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.49 -12.94 5.51 -98.93 -0.55 -13.48 16 8 C 0.01 0.31 5.97 -27.49 -0.16 0.15 16 9 C -0.11 -2.31 5.40 -26.63 -0.14 -2.46 16 10 C 0.16 3.08 2.35 -67.98 -0.16 2.92 16 11 H 0.08 1.71 7.57 -51.93 -0.39 1.32 16 12 N -0.72 -11.51 5.07 -53.85 -0.27 -11.78 16 13 C 0.52 8.53 7.37 -10.98 -0.08 8.45 16 14 O -0.52 -11.20 16.32 5.55 0.09 -11.11 16 15 C 0.01 0.08 4.41 -72.59 -0.32 -0.24 16 16 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.13 -1.25 8.00 -26.20 -0.21 -1.46 16 18 C 0.00 0.00 8.62 -7.54 -0.06 -0.07 16 19 N -0.60 -7.15 8.14 -116.71 -0.95 -8.10 16 20 C -0.11 -2.42 5.50 -26.61 -0.15 -2.57 16 21 C -0.01 -0.22 5.60 -27.46 -0.15 -0.38 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.39 4.96 8.60 -40.82 -0.35 4.61 16 28 H 0.10 1.15 8.11 -51.93 -0.42 0.73 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.32 3.19 8.91 -39.29 -0.35 2.84 16 33 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.03 0.60 5.17 -51.93 -0.27 0.33 16 LS Contribution 289.74 15.07 4.37 4.37 Total: -1.00 -31.66 289.74 -8.22 -39.88 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.51 Total: 1.73 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.09 Total: -7.13 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.52 Total: -44.68 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.56 Total: 16.94 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.66 -8.22 -39.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.005 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds