Wall clock time and date at job start Sun Mar 29 2020 21:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48499 * 109.47381 * 240.00467 * 3 2 1 5 5 H 1.48502 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00085 * 3 2 1 7 7 C 1.37871 * 120.00123 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.85110 * 0.02562 * 7 2 1 9 9 C 1.53232 * 108.53595 * 231.32631 * 8 7 2 10 10 C 1.52957 * 109.40615 * 305.37003 * 9 8 7 11 11 H 1.09005 * 109.41431 * 303.56408 * 10 9 8 12 12 N 1.46499 * 109.41674 * 183.70719 * 10 9 8 13 13 C 1.34777 * 120.00199 * 154.86051 * 12 10 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10 16 16 H 1.09003 * 112.74720 * 48.45417 * 15 13 12 17 17 C 1.53506 * 113.47195 * 277.60674 * 15 13 12 18 18 C 1.53519 * 83.57521 * 219.20722 * 17 15 13 19 19 N 1.47472 * 113.47563 * 179.22625 * 15 13 12 20 20 C 1.52955 * 109.76016 * 63.62925 * 10 9 8 21 21 C 1.51269 * 120.85060 * 179.97438 * 7 2 1 22 22 H 0.96998 * 119.99644 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.63232 * 111.61038 * 8 7 2 24 24 H 1.09000 * 109.62790 * 351.03702 * 8 7 2 25 25 H 1.09003 * 109.48338 * 185.38929 * 9 8 7 26 26 H 1.09001 * 109.48531 * 65.34775 * 9 8 7 27 27 H 0.97000 * 119.99484 * 334.85148 * 12 10 9 28 28 H 1.08999 * 114.17654 * 332.85841 * 17 15 13 29 29 H 1.09002 * 114.17253 * 105.56553 * 17 15 13 30 30 H 1.08995 * 113.47742 * 271.26037 * 18 17 15 31 31 H 1.09000 * 113.47447 * 140.78600 * 18 17 15 32 32 H 1.00897 * 111.00340 * 253.47328 * 19 15 13 33 33 H 1.09009 * 109.48109 * 56.35249 * 20 10 9 34 34 H 1.08999 * 109.48679 * 176.38863 * 20 10 9 35 35 H 1.08996 * 109.62936 * 248.38988 * 21 7 2 36 36 H 1.08996 * 109.62379 * 8.96351 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 1.2678 -2.5151 -0.0017 9 6 1.8230 -3.3835 1.1322 10 6 3.3400 -3.5078 0.9810 11 1 3.5741 -3.9110 -0.0043 12 7 3.8599 -4.4092 2.0122 13 6 5.0160 -5.0712 1.8080 14 8 5.6257 -4.9209 0.7703 15 6 5.5477 -6.0032 2.8662 16 1 4.7908 -6.6935 3.2387 17 6 6.3235 -5.2854 3.9794 18 6 7.2486 -6.5069 3.8854 19 7 6.8098 -6.6645 2.4862 20 6 3.9894 -2.1314 1.1343 21 6 3.5171 -1.2164 -0.0011 22 1 -0.4849 0.8401 -0.0004 23 1 1.4200 -3.0184 -0.9564 24 1 0.2037 -2.3410 0.1579 25 1 1.3707 -4.3742 1.0862 26 1 1.5900 -2.9214 2.0915 27 1 3.3721 -4.5295 2.8419 28 1 6.7872 -4.3493 3.6682 29 1 5.7818 -5.2073 4.9220 30 1 6.9460 -7.3315 4.5309 31 1 8.3056 -6.2597 3.9838 32 1 6.6559 -7.6363 2.2628 33 1 3.7040 -1.6996 2.0936 34 1 5.0737 -2.2340 1.0899 35 1 3.8772 -1.5997 -0.9558 36 1 3.8982 -0.2079 0.1589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220095303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:49 Heat of formation + Delta-G solvation = -43.754180 kcal Electronic energy + Delta-G solvation = -17260.790398 eV Core-core repulsion = 14550.983295 eV Total energy + Delta-G solvation = -2709.807103 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.46013 -39.63535 -38.09486 -35.33831 -33.41536 -31.50322 -29.67196 -28.59247 -27.38787 -24.09969 -23.33067 -21.99112 -21.28829 -20.47942 -18.56451 -18.13693 -17.65512 -16.99593 -16.43827 -15.74507 -15.61656 -14.97224 -14.64398 -14.44817 -14.19437 -13.97081 -13.78793 -13.45810 -12.85952 -12.77944 -12.66707 -12.55905 -12.26149 -12.17650 -12.01107 -11.80809 -11.61276 -11.03817 -10.76952 -10.60651 -10.53203 -9.89934 -9.83503 -8.18924 -6.12822 1.38222 1.40304 1.47844 1.70003 2.20771 2.39701 3.08869 3.29476 3.44373 3.79817 3.99950 4.10138 4.19711 4.28995 4.47280 4.48922 4.69295 4.81271 4.84014 4.87057 4.94200 5.00729 5.06122 5.14309 5.16254 5.19583 5.23855 5.52613 5.58113 5.70670 5.75132 5.81440 6.28058 6.33728 6.74640 6.92096 7.41751 7.45503 8.91750 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045445 B = 0.005602 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.977217 B = 4996.753600 C = 5251.336593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.029 3.971 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.501 4.501 8 C 0.007 3.993 9 C -0.099 4.099 10 C 0.166 3.834 11 H 0.050 0.950 12 N -0.712 5.712 13 C 0.511 3.489 14 O -0.580 6.580 15 C 0.013 3.987 16 H 0.133 0.867 17 C -0.126 4.126 18 C 0.010 3.990 19 N -0.636 5.636 20 C -0.104 4.104 21 C -0.012 4.012 22 H 0.265 0.735 23 H -0.005 1.005 24 H 0.036 0.964 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.413 0.587 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.331 0.669 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.011 0.989 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -12.083 12.332 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.520 4.520 8 C -0.031 4.031 9 C -0.137 4.137 10 C 0.062 3.938 11 H 0.068 0.932 12 N -0.363 5.363 13 C 0.298 3.702 14 O -0.459 6.459 15 C -0.101 4.101 16 H 0.151 0.849 17 C -0.164 4.164 18 C -0.120 4.120 19 N -0.263 5.263 20 C -0.143 4.143 21 C -0.051 4.051 22 H 0.074 0.926 23 H 0.014 0.986 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.249 0.751 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.641 -11.335 11.084 18.555 hybrid contribution -0.642 0.449 0.292 0.836 sum 9.000 -10.885 11.376 18.136 Atomic orbital electron populations 1.69934 1.07384 1.27620 1.51660 1.25510 0.95350 1.01431 0.94741 0.85862 0.78433 0.79785 0.79323 1.19886 1.21600 1.18942 1.20558 0.90616 0.92153 1.48678 1.19310 0.97401 0.93317 0.93024 1.21687 0.92601 0.98949 1.00487 1.20579 0.93929 0.88758 0.90558 0.93215 1.46098 1.23793 1.45206 1.21223 1.21123 0.80082 0.81047 0.87954 1.90677 1.58955 1.66339 1.29892 1.23360 0.95303 0.97695 0.93720 0.84946 1.23150 0.97289 0.98094 0.97844 1.23579 1.01304 0.97886 0.89193 1.67163 1.16066 1.19738 1.23310 1.21770 0.97211 0.95656 0.99698 1.19623 0.95285 0.95392 0.94758 0.92626 0.98649 0.94554 0.92147 0.92128 0.75096 0.90869 0.86594 0.88139 0.89482 0.85500 0.92324 0.94643 0.97068 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.84 12.73 21.45 0.27 -53.57 16 2 C 0.03 1.57 5.46 84.65 0.46 2.03 16 3 Si 0.94 43.99 26.80 68.60 1.84 45.83 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.50 -26.66 5.51 -16.17 -0.09 -26.75 16 8 C 0.01 0.37 5.97 30.11 0.18 0.55 16 9 C -0.10 -3.90 5.40 30.66 0.17 -3.74 16 10 C 0.17 6.45 2.35 44.96 0.11 6.55 16 11 H 0.05 2.23 7.57 -2.38 -0.02 2.21 16 12 N -0.71 -21.01 5.07 -442.66 -2.25 -23.25 16 13 C 0.51 16.05 7.37 87.66 0.65 16.69 16 14 O -0.58 -24.79 16.32 -3.04 -0.05 -24.84 16 15 C 0.01 0.27 4.41 41.44 0.18 0.45 16 16 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.13 -2.02 8.00 30.94 0.25 -1.77 16 18 C 0.01 0.14 8.62 83.58 0.72 0.86 16 19 N -0.64 -13.75 8.14 -523.15 -4.26 -18.01 16 20 C -0.10 -4.39 5.50 30.67 0.17 -4.22 16 21 C -0.01 -0.60 5.60 30.12 0.17 -0.43 16 22 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 23 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.04 1.97 7.07 -2.39 -0.02 1.95 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.41 8.96 8.60 -92.71 -0.80 8.16 16 28 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 29 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.33 5.77 8.91 -89.70 -0.80 4.98 16 33 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.03 1.27 5.17 -2.39 -0.01 1.26 16 Total: -1.00 -70.29 289.74 -1.99 -72.28 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -0.51 Total: 11.33 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 2.96 Total: -9.76 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -6.23 Total: -94.83 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.84 Total: 45.83 kcal Total: -70.29 -1.99 -72.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.526 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds