Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47126 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00317 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99937 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00245 * 180.02562 * 13 12 11 16 16 H 1.09006 * 115.51746 * 34.58481 * 15 13 12 17 17 C 1.52999 * 117.44790 * 180.02562 * 15 13 12 18 18 H 1.09005 * 119.51935 * 355.91030 * 17 15 13 19 19 C 1.54373 * 118.13258 * 200.87438 * 17 15 13 20 20 N 1.48561 * 104.59189 * 272.77051 * 19 17 15 21 21 C 1.48557 * 104.22341 * 39.48127 * 20 19 17 22 22 C 1.53000 * 117.44747 * 249.23599 * 15 13 12 23 23 H 1.08999 * 119.52069 * 4.08631 * 22 15 13 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 0.96998 * 119.99881 * 0.02562 * 12 11 10 32 32 H 1.08994 * 110.41488 * 31.54474 * 19 17 15 33 33 H 1.08996 * 110.41238 * 153.87546 * 19 17 15 34 34 H 1.00902 * 110.99920 * 159.04488 * 20 19 17 35 35 H 1.09002 * 110.40984 * 79.29877 * 21 20 19 36 36 H 1.08999 * 110.41033 * 201.61802 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 7 2.4322 -6.1006 -0.0024 13 6 1.9829 -7.3713 -0.0024 14 8 0.7906 -7.5929 -0.0025 15 6 2.9622 -8.5167 -0.0022 16 1 3.8828 -8.3474 0.5563 17 6 2.3884 -9.9351 -0.0028 18 1 1.3099 -10.0782 0.0644 19 6 3.2944 -11.0870 0.4825 20 7 4.0403 -11.5125 -0.7297 21 6 4.3561 -10.2405 -1.4292 22 6 3.0547 -9.3656 -1.2717 23 1 2.4722 -9.0849 -2.1492 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 3.3858 -5.9234 -0.0019 32 1 3.9841 -10.7315 1.2479 33 1 2.6909 -11.9088 0.8676 34 1 4.8837 -12.0071 -0.4803 35 1 5.2120 -9.7526 -0.9629 36 1 4.5541 -10.4262 -2.4849 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220191458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = -18.165036 kcal Electronic energy + Delta-G solvation = -16109.228969 eV Core-core repulsion = 13400.531494 eV Total energy + Delta-G solvation = -2708.697475 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49353 -38.57615 -35.44021 -33.38378 -33.21704 -31.19428 -28.58939 -27.17430 -25.02376 -23.00300 -21.51379 -20.73541 -20.37522 -19.74047 -17.50777 -16.62905 -16.32997 -15.77412 -15.27698 -14.66690 -14.43356 -14.12737 -13.90756 -13.61389 -13.12359 -12.49548 -12.32986 -12.21097 -11.87500 -11.77969 -11.64624 -10.90132 -10.75511 -10.65256 -10.46887 -10.41505 -9.92958 -9.88756 -9.40567 -9.15053 -8.96025 -8.81506 -8.38543 -6.03217 -4.06643 2.45905 3.16446 3.30902 3.35766 3.37671 3.53302 3.91368 4.20857 4.42162 4.43094 4.60934 4.71048 4.92659 4.96742 5.08672 5.19734 5.32420 5.47963 5.51954 5.70938 5.74794 5.82406 5.96148 6.13271 6.20319 6.45027 6.56952 6.80107 6.85630 6.97620 7.61318 7.67297 7.73951 7.95218 8.33412 8.37546 8.99806 9.57614 11.08060 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.064521 B = 0.003382 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.861519 B = 8276.189345 C = 8537.360528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.720 5.720 13 C 0.538 3.462 14 O -0.542 6.542 15 C -0.161 4.161 16 H 0.118 0.882 17 C -0.132 4.132 18 H 0.129 0.871 19 C 0.064 3.936 20 N -0.666 5.666 21 C 0.064 3.936 22 C -0.134 4.134 23 H 0.128 0.872 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.399 0.601 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.340 0.660 35 H 0.048 0.952 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.180 -19.957 -0.332 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.370 5.370 13 C 0.323 3.677 14 O -0.419 6.419 15 C -0.183 4.183 16 H 0.136 0.864 17 C -0.151 4.151 18 H 0.147 0.853 19 C -0.065 4.065 20 N -0.296 5.296 21 C -0.065 4.065 22 C -0.154 4.154 23 H 0.146 0.854 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.574 -20.211 -0.750 21.967 hybrid contribution 1.618 1.584 0.631 2.351 sum 10.192 -18.627 -0.119 21.233 Atomic orbital electron populations 1.69960 1.06070 1.26834 1.50418 1.25031 0.94866 0.99314 0.95238 0.86633 0.79558 0.83058 0.78591 1.20226 1.21247 1.20242 1.21166 0.92958 0.90958 1.51143 0.92690 1.19026 0.93839 0.90827 0.97668 1.21891 0.99778 0.93300 1.00895 1.21675 0.91874 0.85059 1.02056 1.46130 1.10902 1.05667 1.74310 1.19463 0.88461 0.83365 0.76388 1.90703 1.16612 1.84769 1.49853 1.22451 1.00967 0.91602 1.03267 0.86398 1.23331 1.00675 0.90153 1.00976 0.85277 1.22478 0.95936 0.96460 0.91641 1.63815 1.25171 1.19691 1.20890 1.23030 0.94135 0.88906 1.00415 1.24059 0.98998 1.00031 0.92273 0.85421 0.92839 0.96273 0.96261 0.92684 0.92716 0.91694 0.91716 0.76704 0.93664 0.89160 0.84422 0.93427 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 12 N -0.72 -10.32 5.56 -60.30 -0.34 -10.66 16 13 C 0.54 8.01 7.61 -10.99 -0.08 7.93 16 14 O -0.54 -10.28 16.33 5.56 0.09 -10.19 16 15 C -0.16 -1.75 5.68 -91.77 -0.52 -2.27 16 16 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 17 C -0.13 -1.40 6.49 -89.26 -0.58 -1.98 16 18 H 0.13 1.58 7.80 -51.93 -0.40 1.18 16 19 C 0.06 0.52 7.27 -2.18 -0.02 0.50 16 20 N -0.67 -5.25 7.63 -107.74 -0.82 -6.07 16 21 C 0.06 0.50 7.33 -0.39 0.00 0.49 16 22 C -0.13 -1.34 7.10 -87.47 -0.62 -1.97 16 23 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.40 4.57 8.47 -40.82 -0.35 4.22 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.34 1.94 8.92 -39.29 -0.35 1.59 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -32.41 304.57 -9.01 -41.42 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.72 Total: 1.30 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.54 Total: -10.70 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.42 Total: -42.85 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.41 -9.01 -41.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220191458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.258 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds