Wall clock time and date at job start Sun Mar 29 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46721 * 2 1 4 4 C 1.53004 * 109.46721 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46741 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99962 * 269.74589 * 5 4 3 7 7 H 1.07990 * 120.00473 * 322.03057 * 6 5 4 8 8 C 1.38817 * 119.99763 * 142.02379 * 6 5 4 9 9 N 1.31617 * 120.00138 * 157.30322 * 8 6 5 10 10 Si 1.86808 * 120.00116 * 337.29889 * 8 6 5 11 11 H 1.48497 * 109.46982 * 95.69157 * 10 8 6 12 12 H 1.48492 * 109.47098 * 215.69585 * 10 8 6 13 13 H 1.48503 * 109.47022 * 335.69740 * 10 8 6 14 14 C 1.46500 * 120.00034 * 89.75694 * 5 4 3 15 15 C 1.50690 * 109.47589 * 89.99530 * 14 5 4 16 16 C 1.34335 * 126.44599 * 90.02280 * 15 14 5 17 17 N 1.34474 * 107.67346 * 180.02562 * 16 15 14 18 18 C 1.30256 * 108.69979 * 359.97438 * 17 16 15 19 19 C 1.50700 * 125.62228 * 179.97438 * 18 17 16 20 20 O 1.33974 * 108.75972 * 0.02562 * 18 17 16 21 21 H 1.09000 * 109.47067 * 299.99404 * 1 2 3 22 22 H 1.08998 * 109.47522 * 59.99702 * 1 2 3 23 23 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47067 * 240.00596 * 2 1 3 25 25 H 1.09001 * 109.47255 * 119.99841 * 2 1 3 26 26 H 1.09000 * 109.46864 * 60.00471 * 3 2 1 27 27 H 1.09001 * 109.47126 * 299.99921 * 3 2 1 28 28 H 1.09000 * 109.46968 * 60.00048 * 4 3 2 29 29 H 1.09001 * 109.47255 * 299.99841 * 4 3 2 30 30 H 0.97000 * 120.00418 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47124 * 329.98926 * 14 5 4 32 32 H 1.09009 * 109.46893 * 210.00037 * 14 5 4 33 33 H 1.08005 * 126.16362 * 359.95979 * 16 15 14 34 34 H 1.08996 * 109.47307 * 270.02959 * 19 18 17 35 35 H 1.09007 * 109.46636 * 30.03019 * 19 18 17 36 36 H 1.08997 * 109.47060 * 150.02477 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2919 3.4679 -1.1844 7 1 4.7154 2.9278 -2.0181 8 6 3.9842 4.8153 -1.3146 9 7 4.5844 5.5416 -2.2336 10 14 2.7181 5.5976 -0.1856 11 1 3.4083 6.2448 0.9590 12 1 1.9461 6.6179 -0.9393 13 1 1.7934 4.5519 0.3212 14 6 4.2967 3.5158 1.2703 15 6 5.7179 3.2796 1.7120 16 6 6.7849 4.0365 1.4064 17 7 7.8599 3.4834 1.9952 18 6 7.4795 2.4206 2.6452 19 6 8.3782 1.5106 3.4422 20 8 6.1577 2.2693 2.4877 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9337 0.9286 -0.8891 29 1 3.9330 0.9289 0.8909 30 1 4.3696 6.4832 -2.3244 31 1 3.6125 3.1327 2.0273 32 1 4.1302 4.5850 1.1380 33 1 6.7803 4.9279 0.7966 34 1 8.7598 0.7199 2.7962 35 1 9.2125 2.0853 3.8447 36 1 7.8125 1.0684 4.2623 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233367530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:48 Heat of formation + Delta-G solvation = 28.515474 kcal Electronic energy + Delta-G solvation = -17291.418689 eV Core-core repulsion = 14584.745433 eV Total energy + Delta-G solvation = -2706.673256 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.59155 -36.76404 -34.28747 -34.06655 -32.03273 -31.46045 -29.25176 -27.59278 -24.93044 -24.02518 -21.73999 -21.18261 -20.55309 -19.97840 -17.24541 -16.25913 -15.93940 -15.45544 -14.89667 -14.36277 -14.04136 -13.60992 -13.47829 -13.04687 -12.84151 -12.50755 -12.48492 -12.37264 -12.12911 -11.99467 -11.33526 -10.95594 -10.77506 -10.63979 -10.60149 -10.44270 -10.27722 -9.93799 -9.90482 -9.68157 -8.66963 -7.99058 -7.06387 -6.12705 -3.55832 2.11361 3.18709 3.25689 3.35066 3.40310 3.43622 4.38324 4.59790 4.89089 5.13117 5.31492 5.33241 5.45191 5.50868 5.51119 5.64232 5.68133 5.84434 5.90646 6.06748 6.08461 6.13369 6.22126 6.25333 6.28668 6.44170 6.50742 6.54739 6.72924 6.83206 7.00670 7.07298 7.89035 8.26372 8.39028 8.80327 9.54501 9.93245 11.01923 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.009869 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.804710 B = 2836.422243 C = 4085.469025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.149 3.851 5 N -0.589 5.589 6 C -0.273 4.273 7 H 0.081 0.919 8 C 0.042 3.958 9 N -0.888 5.888 10 Si 0.863 3.137 11 H -0.282 1.282 12 H -0.295 1.295 13 H -0.262 1.262 14 C 0.212 3.788 15 C -0.036 4.036 16 C -0.040 4.040 17 N -0.484 5.484 18 C 0.148 3.852 19 C -0.047 4.047 20 O -0.208 6.208 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -8.384 9.469 12.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.024 3.976 5 N -0.309 5.309 6 C -0.402 4.402 7 H 0.099 0.901 8 C -0.160 4.160 9 N -0.527 5.527 10 Si 0.692 3.308 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.186 1.186 14 C 0.084 3.916 15 C -0.092 4.092 16 C -0.179 4.179 17 N -0.214 5.214 18 C -0.059 4.059 19 C -0.104 4.104 20 O -0.095 6.095 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.197 0.803 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.867 -8.069 9.327 12.363 hybrid contribution -1.311 0.501 0.371 1.451 sum -2.177 -7.568 9.698 12.493 Atomic orbital electron populations 1.21765 0.96600 1.00693 1.01664 1.21498 0.95230 0.97983 1.01326 1.22186 0.98606 0.94946 1.02091 1.20984 0.91502 0.85689 0.99437 1.44234 1.73424 1.11923 1.01306 1.18783 1.37473 0.93528 0.90397 0.90147 1.25476 0.97408 0.96690 0.96422 1.69876 1.40201 1.07089 1.35580 0.87127 0.84084 0.79297 0.80334 1.21017 1.22298 1.18585 1.20030 0.84679 0.98431 0.88446 1.25491 1.01283 0.87567 0.94850 1.23001 0.87198 1.03640 1.04050 1.70321 1.31838 1.08104 1.11180 1.26041 0.80879 0.97036 1.01908 1.20058 0.96073 0.96525 0.97785 1.84375 1.24520 1.45417 1.55203 0.93154 0.92831 0.93443 0.92278 0.92696 0.93109 0.91481 0.92774 0.94217 0.92400 0.92210 0.89491 0.80321 0.89764 0.88882 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.14 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.15 2.93 5.67 -4.04 -0.02 2.91 16 5 N -0.59 -13.65 2.05 -174.61 -0.36 -14.01 16 6 C -0.27 -7.37 9.91 -15.06 -0.15 -7.52 16 7 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 8 C 0.04 1.15 5.29 -17.43 -0.09 1.06 16 9 N -0.89 -26.07 13.97 55.49 0.78 -25.29 16 10 Si 0.86 20.78 25.08 -169.99 -4.26 16.52 16 11 H -0.28 -6.58 6.68 56.52 0.38 -6.21 16 12 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.21 4.60 5.06 -5.20 -0.03 4.57 16 15 C -0.04 -0.78 6.97 -35.69 -0.25 -1.02 16 16 C -0.04 -0.88 11.80 -17.77 -0.21 -1.09 16 17 N -0.48 -10.08 11.29 -11.10 -0.13 -10.21 16 18 C 0.15 2.68 8.34 -12.95 -0.11 2.57 16 19 C -0.05 -0.54 10.51 36.01 0.38 -0.16 16 20 O -0.21 -4.14 10.78 5.35 0.06 -4.08 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 29 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 32 H 0.09 2.00 3.36 -51.92 -0.17 1.82 16 33 H 0.18 4.04 8.06 -52.48 -0.42 3.62 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 302.39 15.07 4.56 4.56 Total: -1.00 -30.47 302.39 -5.44 -35.91 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.66 Total: 1.26 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.42 Total: -4.66 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.29 Total: -49.51 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: 0.06 Total: -4.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.26 Total: 16.52 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.47 -5.44 -35.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233367530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.425 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds