Wall clock time and date at job start Sun Mar 29 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46721 * 2 1 4 4 C 1.53004 * 109.46721 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46741 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99962 * 269.74589 * 5 4 3 7 7 H 1.07990 * 120.00473 * 322.03057 * 6 5 4 8 8 C 1.38817 * 119.99763 * 142.02379 * 6 5 4 9 9 N 1.31617 * 120.00138 * 157.30322 * 8 6 5 10 10 Si 1.86808 * 120.00116 * 337.29889 * 8 6 5 11 11 H 1.48497 * 109.46982 * 95.69157 * 10 8 6 12 12 H 1.48492 * 109.47098 * 215.69585 * 10 8 6 13 13 H 1.48503 * 109.47022 * 335.69740 * 10 8 6 14 14 C 1.46500 * 120.00034 * 89.75694 * 5 4 3 15 15 C 1.50690 * 109.47589 * 89.99530 * 14 5 4 16 16 C 1.34335 * 126.44599 * 90.02280 * 15 14 5 17 17 N 1.34474 * 107.67346 * 180.02562 * 16 15 14 18 18 C 1.30256 * 108.69979 * 359.97438 * 17 16 15 19 19 C 1.50700 * 125.62228 * 179.97438 * 18 17 16 20 20 O 1.33974 * 108.75972 * 0.02562 * 18 17 16 21 21 H 1.09000 * 109.47067 * 299.99404 * 1 2 3 22 22 H 1.08998 * 109.47522 * 59.99702 * 1 2 3 23 23 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47067 * 240.00596 * 2 1 3 25 25 H 1.09001 * 109.47255 * 119.99841 * 2 1 3 26 26 H 1.09000 * 109.46864 * 60.00471 * 3 2 1 27 27 H 1.09001 * 109.47126 * 299.99921 * 3 2 1 28 28 H 1.09000 * 109.46968 * 60.00048 * 4 3 2 29 29 H 1.09001 * 109.47255 * 299.99841 * 4 3 2 30 30 H 0.97000 * 120.00418 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47124 * 329.98926 * 14 5 4 32 32 H 1.09009 * 109.46893 * 210.00037 * 14 5 4 33 33 H 1.08005 * 126.16362 * 359.95979 * 16 15 14 34 34 H 1.08996 * 109.47307 * 270.02959 * 19 18 17 35 35 H 1.09007 * 109.46636 * 30.03019 * 19 18 17 36 36 H 1.08997 * 109.47060 * 150.02477 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2919 3.4679 -1.1844 7 1 4.7154 2.9278 -2.0181 8 6 3.9842 4.8153 -1.3146 9 7 4.5844 5.5416 -2.2336 10 14 2.7181 5.5976 -0.1856 11 1 3.4083 6.2448 0.9590 12 1 1.9461 6.6179 -0.9393 13 1 1.7934 4.5519 0.3212 14 6 4.2967 3.5158 1.2703 15 6 5.7179 3.2796 1.7120 16 6 6.7849 4.0365 1.4064 17 7 7.8599 3.4834 1.9952 18 6 7.4795 2.4206 2.6452 19 6 8.3782 1.5106 3.4422 20 8 6.1577 2.2693 2.4877 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9337 0.9286 -0.8891 29 1 3.9330 0.9289 0.8909 30 1 4.3696 6.4832 -2.3244 31 1 3.6125 3.1327 2.0273 32 1 4.1302 4.5850 1.1380 33 1 6.7803 4.9279 0.7966 34 1 8.7598 0.7199 2.7962 35 1 9.2125 2.0853 3.8447 36 1 7.8125 1.0684 4.2623 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233367530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:48 Heat of formation + Delta-G solvation = 7.919866 kcal Electronic energy + Delta-G solvation = -17292.311782 eV Core-core repulsion = 14584.745433 eV Total energy + Delta-G solvation = -2707.566348 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.16812 -38.46319 -35.68771 -35.63429 -33.91877 -32.94820 -30.58096 -29.17203 -26.64792 -25.57373 -23.37632 -22.60182 -22.01653 -21.55668 -19.17657 -17.84012 -17.54585 -17.29877 -16.28434 -15.99350 -15.65842 -15.06607 -14.88308 -14.63046 -14.34819 -14.09438 -13.80398 -13.58933 -13.40648 -13.29928 -12.92392 -12.71869 -12.21923 -12.20057 -12.19749 -11.92707 -11.76025 -11.61944 -11.48686 -11.31533 -10.72604 -9.61050 -8.96760 -8.25835 -5.67843 0.55382 1.26810 1.39959 1.49720 1.72993 1.82138 2.36014 2.99646 3.25428 3.28368 3.92949 4.11954 4.13406 4.20919 4.25645 4.39549 4.49570 4.51083 4.67562 4.72892 4.75208 4.80612 4.95324 5.02917 5.05675 5.07056 5.10447 5.17442 5.38235 5.47258 5.51974 5.58525 5.86778 6.12578 6.80388 6.85127 7.49298 7.91479 8.93020 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.009869 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.804710 B = 2836.422243 C = 4085.469025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.130 4.130 4 C 0.148 3.852 5 N -0.600 5.600 6 C -0.264 4.264 7 H 0.037 0.963 8 C -0.008 4.008 9 N -0.938 5.938 10 Si 0.926 3.074 11 H -0.270 1.270 12 H -0.303 1.303 13 H -0.244 1.244 14 C 0.212 3.788 15 C -0.048 4.048 16 C -0.060 4.060 17 N -0.516 5.516 18 C 0.170 3.830 19 C -0.048 4.048 20 O -0.208 6.208 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.266 0.734 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -10.299 12.271 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.170 4.170 4 C 0.023 3.977 5 N -0.320 5.320 6 C -0.394 4.394 7 H 0.055 0.945 8 C -0.206 4.206 9 N -0.580 5.580 10 Si 0.753 3.247 11 H -0.197 1.197 12 H -0.232 1.232 13 H -0.167 1.167 14 C 0.085 3.915 15 C -0.104 4.104 16 C -0.198 4.198 17 N -0.246 5.246 18 C -0.038 4.038 19 C -0.105 4.105 20 O -0.095 6.095 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.179 0.821 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.576 -10.005 12.153 15.821 hybrid contribution -0.915 0.965 -0.458 1.407 sum -2.491 -9.041 11.695 14.990 Atomic orbital electron populations 1.21749 0.95222 1.02071 1.01519 1.21454 0.96398 0.95395 1.02228 1.22054 0.96715 0.97308 1.00884 1.21103 0.93020 0.83781 0.99758 1.44306 1.74188 1.12964 1.00588 1.18539 1.36372 0.93497 0.91000 0.94510 1.26039 0.98963 0.97225 0.98345 1.70002 1.42120 1.07455 1.38450 0.86108 0.81447 0.78527 0.78655 1.19676 1.23154 1.16679 1.19982 0.85496 0.97678 0.88307 1.25198 1.00976 0.88287 0.95906 1.22915 0.88455 1.03818 1.04613 1.70333 1.31607 1.09836 1.12863 1.27461 0.80580 0.96134 0.99584 1.20495 0.95679 0.96071 0.98219 1.84375 1.25489 1.44681 1.54974 0.92755 0.93583 0.91328 0.92178 0.91013 0.92863 0.94055 0.93961 0.92286 0.92513 0.89106 0.90939 0.82126 0.87687 0.87095 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.91 71.98 0.71 -2.57 16 2 C -0.12 -2.97 5.93 30.60 0.18 -2.79 16 3 C -0.13 -4.37 5.54 30.60 0.17 -4.20 16 4 C 0.15 5.65 5.67 86.38 0.49 6.14 16 5 N -0.60 -27.72 2.05 -706.35 -1.45 -29.16 16 6 C -0.26 -14.76 9.91 84.03 0.83 -13.93 16 7 H 0.04 2.33 8.06 -2.92 -0.02 2.31 16 8 C -0.01 -0.44 5.29 84.86 0.45 0.01 16 9 N -0.94 -57.45 13.97 21.65 0.30 -57.15 16 10 Si 0.93 43.50 25.08 68.60 1.72 45.22 16 11 H -0.27 -12.04 6.68 99.48 0.66 -11.37 16 12 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 13 H -0.24 -10.62 7.11 99.48 0.71 -9.91 16 14 C 0.21 8.96 5.06 85.63 0.43 9.40 16 15 C -0.05 -2.02 6.97 24.79 0.17 -1.85 16 16 C -0.06 -2.70 11.80 83.40 0.98 -1.71 16 17 N -0.52 -21.14 11.29 -303.81 -3.43 -24.57 16 18 C 0.17 5.71 8.34 88.34 0.74 6.45 16 19 C -0.05 -0.90 10.51 71.24 0.75 -0.15 16 20 O -0.21 -7.76 10.78 -3.76 -0.04 -7.80 16 21 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 29 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 30 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.09 3.24 8.07 -2.39 -0.02 3.22 16 32 H 0.07 3.27 3.36 -2.38 -0.01 3.26 16 33 H 0.16 7.66 8.06 -2.91 -0.02 7.64 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -68.43 302.39 4.01 -64.42 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.00 Total: 14.26 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 5.91 Total: -5.21 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -4.58 Total: -110.89 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.04 Total: -7.80 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.72 Total: 45.22 kcal Total: -68.43 4.01 -64.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233367530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.338 kcal (2) G-P(sol) polarization free energy of solvation -68.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds