Wall clock time and date at job start Sun Mar 29 2020 22:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 N 1.46898 * 109.47335 * 179.60046 * 3 2 1 5 5 C 1.46898 * 111.00368 * 298.09218 * 4 3 2 6 6 C 1.50700 * 109.47194 * 292.95576 * 5 4 3 7 7 H 1.08002 * 119.99811 * 354.94869 * 6 5 4 8 8 C 1.37876 * 120.00081 * 174.96035 * 6 5 4 9 9 N 1.31517 * 119.99940 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46754 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47095 * 119.99427 * 10 8 6 13 13 H 1.48496 * 109.46981 * 239.99573 * 10 8 6 14 14 C 1.46902 * 110.99762 * 62.04611 * 4 3 2 15 15 C 1.50707 * 109.47365 * 66.04817 * 14 4 3 16 16 N 1.30250 * 125.62012 * 89.99341 * 15 14 4 17 17 C 1.34468 * 108.70235 * 179.97438 * 16 15 14 18 18 C 1.50708 * 126.16819 * 179.97438 * 17 16 15 19 19 C 1.34330 * 107.67141 * 0.02562 * 17 16 15 20 20 O 1.33967 * 125.61585 * 269.97997 * 15 14 4 21 21 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47344 * 299.99938 * 1 2 3 23 23 H 1.09002 * 109.46989 * 60.00282 * 1 2 3 24 24 H 1.09000 * 109.47344 * 240.00062 * 2 1 3 25 25 H 1.09002 * 109.46989 * 119.99718 * 2 1 3 26 26 H 1.09000 * 109.47637 * 59.60114 * 3 2 1 27 27 H 1.08999 * 109.47277 * 299.59989 * 3 2 1 28 28 H 1.09008 * 109.46733 * 52.95244 * 5 4 3 29 29 H 1.08993 * 109.47450 * 172.94605 * 5 4 3 30 30 H 0.96995 * 119.99728 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47325 * 306.04761 * 14 4 3 32 32 H 1.09001 * 109.46979 * 186.04573 * 14 4 3 33 33 H 1.08997 * 109.46805 * 90.00575 * 18 17 16 34 34 H 1.08995 * 109.47190 * 210.00351 * 18 17 16 35 35 H 1.09000 * 109.47121 * 330.00564 * 18 17 16 36 36 H 1.08001 * 126.44656 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0097 5 6 4.0275 0.7997 1.2244 6 6 3.6823 1.6422 2.4252 7 1 3.2051 2.6020 2.2923 8 6 3.9758 1.1880 3.6935 9 7 4.5566 0.0192 3.8553 10 14 3.5485 2.2328 5.1819 11 1 2.9068 3.4946 4.7332 12 1 2.6120 1.4853 6.0590 13 1 4.7876 2.5493 5.9366 14 6 4.0433 0.7969 -1.1968 15 6 3.6927 1.6243 -2.4067 16 7 4.4188 2.5834 -2.9061 17 6 3.7862 3.0888 -3.9797 18 6 4.2774 4.2144 -4.8532 19 6 2.6370 2.4103 -4.1327 20 8 2.5829 1.4944 -3.1458 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6708 1.9585 0.8864 27 1 1.6825 1.9543 -0.8935 28 1 3.5790 -0.1880 1.3325 29 1 5.1103 0.7006 1.1491 30 1 4.7628 -0.3004 4.7476 31 1 3.6096 -0.1979 -1.2989 32 1 5.1271 0.7142 -1.1149 33 1 4.8775 3.8075 -5.6670 34 1 3.4243 4.7534 -5.2652 35 1 4.8856 4.8965 -4.2591 36 1 1.8958 2.5690 -4.9020 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237644777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:24 Heat of formation + Delta-G solvation = 17.062354 kcal Electronic energy + Delta-G solvation = -17192.812536 eV Core-core repulsion = 14485.642636 eV Total energy + Delta-G solvation = -2707.169900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.04973 -37.56286 -34.89478 -32.83125 -32.55039 -31.19644 -28.48241 -26.82129 -26.17586 -24.10181 -22.16653 -21.35766 -20.97610 -19.29527 -16.81129 -16.54530 -16.19367 -15.15806 -14.81927 -14.71094 -14.19735 -13.89705 -13.51368 -13.23540 -13.10649 -12.71481 -12.21299 -12.09667 -11.73436 -11.39829 -11.20832 -11.01194 -10.90201 -10.72018 -10.62310 -10.54541 -10.20991 -9.99564 -9.80234 -9.26498 -8.54190 -8.43494 -7.30030 -6.04349 -4.05065 1.69299 2.90205 3.04694 3.31093 3.38875 3.44183 4.24875 4.43556 4.93908 4.97994 5.07018 5.31741 5.44008 5.48876 5.55140 5.56917 5.69622 5.78282 5.81676 5.93581 6.05690 6.14021 6.18665 6.29674 6.37393 6.47814 6.55855 6.67455 6.89473 7.20755 7.34138 7.75929 7.98341 8.07966 8.11073 8.46430 9.02426 9.59021 11.06377 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027655 B = 0.006238 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.228758 B = 4487.797089 C = 4980.167629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.163 4.163 3 C 0.064 3.936 4 N -0.528 5.528 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.140 3.860 15 C 0.225 3.775 16 N -0.475 5.475 17 C -0.018 4.018 18 C -0.069 4.069 19 C -0.096 4.096 20 O -0.203 6.203 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.009 0.991 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 2.148 -14.366 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.202 4.202 3 C -0.064 4.064 4 N -0.252 5.252 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.011 3.989 15 C 0.017 3.983 16 N -0.205 5.205 17 C -0.138 4.138 18 C -0.126 4.126 19 C -0.167 4.167 20 O -0.090 6.090 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.283 2.685 -13.954 14.842 hybrid contribution -1.172 -0.499 0.476 1.360 sum -5.455 2.186 -13.478 14.704 Atomic orbital electron populations 1.21628 0.96272 1.00769 1.01250 1.22162 0.95911 0.99990 1.02143 1.22104 0.87913 0.94842 1.01558 1.62376 1.06922 1.54484 1.01417 1.19854 0.95412 0.93584 0.84605 1.21129 1.39133 1.04176 0.89789 0.91804 1.24954 0.95355 0.95144 0.99010 1.69958 1.42441 1.18853 1.22547 0.86454 0.78077 0.80432 0.82564 1.19669 1.21129 1.21002 1.20558 1.01858 0.92399 0.84080 1.26532 0.80882 0.95783 0.95098 1.70393 1.31621 1.09389 1.09124 1.21828 0.93886 1.01275 0.96820 1.20059 1.01312 0.94109 0.97165 1.24607 1.02107 0.94329 0.95652 1.84479 1.41445 1.48957 1.34101 0.93490 0.92666 0.93531 0.93055 0.90291 0.89607 0.93267 0.97357 0.95205 0.92958 0.92356 0.87216 0.91066 0.91087 0.90617 0.77566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.16 -2.90 5.28 -26.73 -0.14 -3.04 16 3 C 0.06 1.27 4.99 -3.82 -0.02 1.25 16 4 N -0.53 -11.40 4.69 -237.51 -1.11 -12.51 16 5 C 0.19 4.76 4.53 -4.98 -0.02 4.74 16 6 C -0.50 -13.89 8.40 -34.44 -0.29 -14.17 16 7 H 0.06 1.78 7.37 -52.49 -0.39 1.39 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.14 2.60 5.38 -4.97 -0.03 2.57 16 15 C 0.22 4.06 6.91 -12.95 -0.09 3.97 16 16 N -0.48 -8.77 11.29 -7.35 -0.08 -8.85 16 17 C -0.02 -0.27 7.11 -82.81 -0.59 -0.86 16 18 C -0.07 -0.73 10.43 36.01 0.38 -0.35 16 19 C -0.10 -1.29 12.08 29.35 0.35 -0.93 16 20 O -0.20 -3.32 10.10 5.35 0.05 -3.27 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.86 6.34 -51.93 -0.33 0.53 16 25 H 0.08 1.61 6.28 -51.93 -0.33 1.28 16 26 H 0.09 1.83 6.98 -51.93 -0.36 1.47 16 27 H 0.05 0.93 6.70 -51.93 -0.35 0.58 16 28 H 0.01 0.23 6.01 -51.92 -0.31 -0.09 16 29 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.06 1.00 6.07 -51.93 -0.32 0.68 16 32 H 0.11 2.00 7.92 -51.93 -0.41 1.59 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.21 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 297.50 15.07 4.48 4.48 Total: -1.00 -30.85 297.50 -6.41 -37.27 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.30 Total: -1.13 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.18 Total: -7.11 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.46 Total: -46.74 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: 0.05 Total: -3.27 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.85 -6.41 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237644777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.332 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds