Wall clock time and date at job start Sun Mar 29 2020 22:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 N 1.46898 * 109.47335 * 179.60046 * 3 2 1 5 5 C 1.46898 * 111.00368 * 298.09218 * 4 3 2 6 6 C 1.50700 * 109.47194 * 292.95576 * 5 4 3 7 7 H 1.08002 * 119.99811 * 354.94869 * 6 5 4 8 8 C 1.37876 * 120.00081 * 174.96035 * 6 5 4 9 9 N 1.31517 * 119.99940 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46754 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47095 * 119.99427 * 10 8 6 13 13 H 1.48496 * 109.46981 * 239.99573 * 10 8 6 14 14 C 1.46902 * 110.99762 * 62.04611 * 4 3 2 15 15 C 1.50707 * 109.47365 * 66.04817 * 14 4 3 16 16 N 1.30250 * 125.62012 * 89.99341 * 15 14 4 17 17 C 1.34468 * 108.70235 * 179.97438 * 16 15 14 18 18 C 1.50708 * 126.16819 * 179.97438 * 17 16 15 19 19 C 1.34330 * 107.67141 * 0.02562 * 17 16 15 20 20 O 1.33967 * 125.61585 * 269.97997 * 15 14 4 21 21 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47344 * 299.99938 * 1 2 3 23 23 H 1.09002 * 109.46989 * 60.00282 * 1 2 3 24 24 H 1.09000 * 109.47344 * 240.00062 * 2 1 3 25 25 H 1.09002 * 109.46989 * 119.99718 * 2 1 3 26 26 H 1.09000 * 109.47637 * 59.60114 * 3 2 1 27 27 H 1.08999 * 109.47277 * 299.59989 * 3 2 1 28 28 H 1.09008 * 109.46733 * 52.95244 * 5 4 3 29 29 H 1.08993 * 109.47450 * 172.94605 * 5 4 3 30 30 H 0.96995 * 119.99728 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47325 * 306.04761 * 14 4 3 32 32 H 1.09001 * 109.46979 * 186.04573 * 14 4 3 33 33 H 1.08997 * 109.46805 * 90.00575 * 18 17 16 34 34 H 1.08995 * 109.47190 * 210.00351 * 18 17 16 35 35 H 1.09000 * 109.47121 * 330.00564 * 18 17 16 36 36 H 1.08001 * 126.44656 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0097 5 6 4.0275 0.7997 1.2244 6 6 3.6823 1.6422 2.4252 7 1 3.2051 2.6020 2.2923 8 6 3.9758 1.1880 3.6935 9 7 4.5566 0.0192 3.8553 10 14 3.5485 2.2328 5.1819 11 1 2.9068 3.4946 4.7332 12 1 2.6120 1.4853 6.0590 13 1 4.7876 2.5493 5.9366 14 6 4.0433 0.7969 -1.1968 15 6 3.6927 1.6243 -2.4067 16 7 4.4188 2.5834 -2.9061 17 6 3.7862 3.0888 -3.9797 18 6 4.2774 4.2144 -4.8532 19 6 2.6370 2.4103 -4.1327 20 8 2.5829 1.4944 -3.1458 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6708 1.9585 0.8864 27 1 1.6825 1.9543 -0.8935 28 1 3.5790 -0.1880 1.3325 29 1 5.1103 0.7006 1.1491 30 1 4.7628 -0.3004 4.7476 31 1 3.6096 -0.1979 -1.2989 32 1 5.1271 0.7142 -1.1149 33 1 4.8775 3.8075 -5.6670 34 1 3.4243 4.7534 -5.2652 35 1 4.8856 4.8965 -4.2591 36 1 1.8958 2.5690 -4.9020 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237644777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:24 Heat of formation + Delta-G solvation = -5.594328 kcal Electronic energy + Delta-G solvation = -17193.795004 eV Core-core repulsion = 14485.642636 eV Total energy + Delta-G solvation = -2708.152368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.26519 -39.22027 -36.08798 -34.87360 -33.93065 -32.54863 -30.00491 -28.38522 -27.46216 -25.84413 -23.80286 -22.72276 -22.21341 -20.86491 -18.42479 -17.92264 -17.79931 -16.87464 -16.39987 -16.19048 -15.72320 -15.21036 -15.11748 -14.42890 -14.20367 -14.09212 -13.73428 -13.40301 -13.10662 -12.91587 -12.78230 -12.69444 -12.58833 -12.38671 -12.28712 -11.93897 -11.88160 -11.46458 -11.37471 -11.31098 -10.59078 -9.66837 -9.02019 -8.18721 -6.27231 0.50307 1.40816 1.42352 1.54904 1.68037 1.85171 2.41843 3.05941 3.14628 3.36280 3.89167 4.04134 4.06347 4.10564 4.29411 4.37823 4.46345 4.63092 4.69696 4.81132 4.82895 4.90406 5.00066 5.03419 5.07812 5.10541 5.14041 5.29129 5.38565 5.46352 5.47244 5.66475 6.03588 6.24128 6.51215 6.85916 6.87240 7.41399 8.91937 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027655 B = 0.006238 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.228758 B = 4487.797089 C = 4980.167629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C 0.071 3.929 4 N -0.542 5.542 5 C 0.206 3.794 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.146 3.854 15 C 0.201 3.799 16 N -0.505 5.505 17 C -0.045 4.045 18 C -0.066 4.066 19 C -0.076 4.076 20 O -0.209 6.209 21 H 0.063 0.937 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.061 0.939 28 H -0.006 1.006 29 H 0.005 0.995 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 3.017 -15.852 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.194 4.194 3 C -0.057 4.057 4 N -0.266 5.266 5 C 0.081 3.919 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.571 5.571 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.202 1.202 13 H -0.205 1.205 14 C 0.017 3.983 15 C -0.006 4.006 16 N -0.236 5.236 17 C -0.164 4.164 18 C -0.123 4.123 19 C -0.146 4.146 20 O -0.095 6.095 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.012 0.988 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -5.885 3.553 -15.459 16.919 hybrid contribution -0.677 -0.730 0.795 1.274 sum -6.562 2.823 -14.664 16.312 Atomic orbital electron populations 1.21589 0.93761 1.02103 1.01891 1.22038 0.98074 0.98198 1.01039 1.22018 0.86714 0.96017 1.00923 1.62203 1.08261 1.54837 1.01328 1.19473 0.93757 0.92823 0.85875 1.21374 1.39117 1.04117 0.91085 0.92621 1.25769 0.95103 0.96283 1.01873 1.70064 1.43287 1.20328 1.23394 0.85424 0.77987 0.78858 0.78902 1.19227 1.20226 1.20507 1.20401 1.01483 0.93084 0.83351 1.26063 0.82107 0.96697 0.95757 1.70352 1.32819 1.09732 1.10726 1.22534 0.94539 1.02731 0.96631 1.20192 1.02617 0.92806 0.96658 1.25609 1.02210 0.91988 0.94758 1.84463 1.40670 1.49751 1.34637 0.91841 0.93130 0.91760 0.91980 0.93458 0.91852 0.92019 0.98805 0.97680 0.92677 0.91093 0.87884 0.89587 0.87953 0.91850 0.72598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.15 -5.47 5.28 30.59 0.16 -5.30 16 3 C 0.07 2.83 4.99 86.30 0.43 3.26 16 4 N -0.54 -24.07 4.69 -905.36 -4.24 -28.31 16 5 C 0.21 10.79 4.53 85.56 0.39 11.18 16 6 C -0.52 -29.39 8.40 25.60 0.21 -29.17 16 7 H 0.06 3.18 7.37 -2.91 -0.02 3.16 16 8 C 0.01 0.45 5.46 84.65 0.46 0.92 16 9 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 10 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 C 0.15 5.51 5.38 85.56 0.46 5.97 16 15 C 0.20 7.17 6.91 88.35 0.61 7.78 16 16 N -0.50 -18.39 11.29 -291.98 -3.30 -21.69 16 17 C -0.04 -1.23 7.11 41.26 0.29 -0.94 16 18 C -0.07 -1.21 10.43 71.24 0.74 -0.47 16 19 C -0.08 -1.77 12.08 66.93 0.81 -0.97 16 20 O -0.21 -6.40 10.10 -3.76 -0.04 -6.44 16 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 2.04 6.34 -2.39 -0.02 2.02 16 25 H 0.05 1.97 6.28 -2.39 -0.01 1.96 16 26 H 0.06 2.77 6.98 -2.39 -0.02 2.75 16 27 H 0.06 2.28 6.70 -2.39 -0.02 2.26 16 28 H -0.01 -0.31 6.01 -2.38 -0.01 -0.33 16 29 H 0.01 0.29 7.91 -2.39 -0.02 0.27 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 31 H 0.07 2.46 6.07 -2.39 -0.01 2.44 16 32 H 0.10 3.94 7.92 -2.39 -0.02 3.92 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.26 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -67.86 297.50 1.08 -66.78 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.06 Total: 8.85 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 5.29 Total: -10.88 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -7.25 Total: -104.85 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.04 Total: -6.44 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.86 1.08 -66.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237644777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.188 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds