Wall clock time and date at job start Sun Mar 29 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46892 * 2 1 4 4 C 1.53002 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47101 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46933 * 180.02562 * 5 4 3 7 7 C 1.39821 * 125.86189 * 124.98062 * 6 5 4 8 8 C 1.35942 * 107.83618 * 180.02562 * 7 6 5 9 9 O 1.35753 * 126.19347 * 179.97438 * 8 7 6 10 10 N 1.35134 * 107.61405 * 359.97438 * 8 7 6 11 11 C 1.46500 * 126.03639 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47180 * 269.99825 * 11 10 8 13 13 H 1.08000 * 120.00417 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00281 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00501 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99670 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47362 * 89.99554 * 16 14 12 18 18 H 1.48501 * 109.47157 * 209.99851 * 16 14 12 19 19 H 1.48503 * 109.47060 * 329.99371 * 16 14 12 20 20 N 1.30830 * 125.85408 * 305.02087 * 6 5 4 21 21 H 1.09004 * 109.46887 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47419 * 299.99574 * 1 2 3 23 23 H 1.09001 * 109.47434 * 60.00214 * 1 2 3 24 24 H 1.09001 * 109.46806 * 240.00049 * 2 1 3 25 25 H 1.09001 * 109.46910 * 119.99802 * 2 1 3 26 26 H 1.08990 * 109.47378 * 59.99917 * 3 2 1 27 27 H 1.09001 * 109.46906 * 300.00109 * 3 2 1 28 28 H 1.08999 * 109.47167 * 59.99345 * 4 3 2 29 29 H 1.09001 * 109.46553 * 299.99711 * 4 3 2 30 30 H 1.08990 * 109.47378 * 59.99607 * 5 4 3 31 31 H 1.09001 * 109.47182 * 299.99326 * 5 4 3 32 32 H 1.08003 * 126.08165 * 0.07251 * 7 6 5 33 33 H 0.96703 * 113.99355 * 270.03607 * 9 8 7 34 34 H 1.08992 * 109.47259 * 30.00563 * 11 10 8 35 35 H 1.09006 * 109.46968 * 150.00046 * 11 10 8 36 36 H 0.96996 * 120.00647 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.5870 2.8850 -0.0026 7 6 6.4053 3.5346 -0.9318 8 6 7.6983 3.2930 -0.5885 9 8 8.7990 3.7474 -1.2402 10 7 7.6895 2.5186 0.5189 11 6 8.8686 2.0198 1.2312 12 6 9.2721 0.6844 0.6613 13 1 8.7071 0.2508 -0.1506 14 6 10.3632 0.0166 1.1756 15 7 10.7151 -1.1490 0.6786 16 14 11.3409 0.7670 2.5793 17 1 10.7694 0.3201 3.8751 18 1 12.7569 0.3294 2.4857 19 1 11.2738 2.2480 2.4931 20 7 6.3540 2.2766 0.8653 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 0.9288 -0.8908 29 1 3.9336 0.9286 0.8892 30 1 3.7169 3.3991 0.8886 31 1 3.7163 3.3986 -0.8913 32 1 6.0698 4.1240 -1.7723 33 1 9.1167 3.1552 -1.9357 34 1 9.6894 2.7274 1.1152 35 1 8.6330 1.9070 2.2895 36 1 11.4829 -1.6186 1.0401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245942667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:22 Heat of formation + Delta-G solvation = 3.478629 kcal Electronic energy + Delta-G solvation = -16470.843438 eV Core-core repulsion = 13763.084503 eV Total energy + Delta-G solvation = -2707.758935 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65236 -36.84768 -36.05325 -33.92622 -32.65803 -31.13418 -28.53898 -28.04749 -26.04514 -22.95774 -21.81932 -20.94610 -20.51482 -19.31402 -17.29214 -17.09327 -15.78243 -15.64498 -14.78086 -14.16042 -14.11982 -13.75482 -13.67002 -13.37383 -12.95694 -12.74298 -12.45928 -12.11883 -11.97390 -11.70150 -11.27665 -10.95464 -10.88864 -10.84954 -10.74428 -10.65548 -10.42540 -10.21877 -9.73157 -9.64500 -8.81850 -8.32084 -7.82405 -6.30860 -4.34742 2.44502 3.13712 3.17983 3.22255 3.23339 3.33901 4.19365 4.58484 4.85449 4.94686 4.98146 5.07696 5.20299 5.34322 5.48069 5.56597 5.70655 5.78294 5.90774 5.96747 5.99889 6.07422 6.13304 6.16518 6.26247 6.43597 6.46507 6.49081 6.57789 6.74361 7.19515 7.25124 7.35730 8.09698 8.29392 8.46805 8.71009 9.24736 10.81364 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.005329 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.146023 B = 5252.952505 C = 5998.140324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.029 4.029 6 C 0.058 3.942 7 C -0.302 4.302 8 C 0.264 3.736 9 O -0.472 6.472 10 N -0.334 5.334 11 C 0.226 3.774 12 C -0.545 4.545 13 H 0.079 0.921 14 C 0.080 3.920 15 N -0.886 5.886 16 Si 0.875 3.125 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.264 1.264 20 N -0.273 5.273 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.398 0.602 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 6.479 -2.651 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.154 4.154 5 C -0.069 4.069 6 C -0.106 4.106 7 C -0.333 4.333 8 C 0.091 3.909 9 O -0.276 6.276 10 N -0.123 5.123 11 C 0.107 3.893 12 C -0.583 4.583 13 H 0.097 0.903 14 C -0.124 4.124 15 N -0.523 5.523 16 Si 0.701 3.299 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.188 1.188 20 N -0.101 5.101 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.159 0.841 33 H 0.255 0.745 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.989 6.069 -1.208 14.388 hybrid contribution 0.964 0.266 -0.407 1.080 sum -12.025 6.335 -1.615 13.688 Atomic orbital electron populations 1.21780 0.96255 1.01318 1.01550 1.21546 0.95387 0.97276 1.02277 1.21619 0.95651 0.96539 1.01735 1.21565 0.94411 0.96224 1.03184 1.19905 0.86949 0.97596 1.02403 1.21869 0.96139 0.97839 0.94742 1.20847 0.90489 1.15168 1.06785 1.18765 0.87411 0.95087 0.89614 1.84735 1.43722 1.46734 1.52386 1.49486 1.06123 1.35501 1.21192 1.20021 0.79647 0.96367 0.93304 1.21134 1.14159 1.01931 1.21050 0.90280 1.24794 0.96522 0.94523 0.96561 1.69863 1.26923 1.13812 1.41694 0.86864 0.79934 0.80165 0.82951 1.19533 1.20486 1.18842 1.77360 0.86093 1.22623 1.23978 0.93034 0.92897 0.92937 0.92035 0.91918 0.92109 0.92189 0.91876 0.91081 0.90836 0.90601 0.84085 0.74512 0.93108 0.93516 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.30 5.93 -26.73 -0.16 -1.46 16 3 C -0.12 -1.24 5.21 -26.73 -0.14 -1.38 16 4 C -0.12 -1.55 5.17 -26.73 -0.14 -1.69 16 5 C -0.03 -0.40 5.79 -27.88 -0.16 -0.57 16 6 C 0.06 1.08 6.49 -82.42 -0.53 0.54 16 7 C -0.30 -5.54 10.75 -39.81 -0.43 -5.97 16 8 C 0.26 5.45 7.98 -16.92 -0.14 5.31 16 9 O -0.47 -8.64 13.57 -18.97 -0.26 -8.90 16 10 N -0.33 -7.78 3.60 -62.67 -0.23 -8.01 16 11 C 0.23 5.57 5.21 -5.20 -0.03 5.54 16 12 C -0.54 -15.27 9.94 -34.44 -0.34 -15.61 16 13 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 14 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 15 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 16 Si 0.87 20.46 27.47 -169.99 -4.67 15.79 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 20 N -0.27 -6.08 12.53 33.66 0.42 -5.66 16 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 32 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 33 H 0.40 5.70 9.06 45.56 0.41 6.11 16 34 H 0.05 1.22 7.19 -51.93 -0.37 0.85 16 35 H 0.05 1.15 7.57 -51.93 -0.39 0.75 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -31.46 307.53 -6.13 -37.59 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.02 Total: 4.05 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.79 Total: -14.05 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.97 Total: -39.12 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.26 Total: -8.90 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.46 -6.13 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245942667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.073 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds