Wall clock time and date at job start Sun Mar 29 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46892 * 2 1 4 4 C 1.53002 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47101 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46933 * 180.02562 * 5 4 3 7 7 C 1.39821 * 125.86189 * 124.98062 * 6 5 4 8 8 C 1.35942 * 107.83618 * 180.02562 * 7 6 5 9 9 O 1.35753 * 126.19347 * 179.97438 * 8 7 6 10 10 N 1.35134 * 107.61405 * 359.97438 * 8 7 6 11 11 C 1.46500 * 126.03639 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47180 * 269.99825 * 11 10 8 13 13 H 1.08000 * 120.00417 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00281 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00501 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99670 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47362 * 89.99554 * 16 14 12 18 18 H 1.48501 * 109.47157 * 209.99851 * 16 14 12 19 19 H 1.48503 * 109.47060 * 329.99371 * 16 14 12 20 20 N 1.30830 * 125.85408 * 305.02087 * 6 5 4 21 21 H 1.09004 * 109.46887 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47419 * 299.99574 * 1 2 3 23 23 H 1.09001 * 109.47434 * 60.00214 * 1 2 3 24 24 H 1.09001 * 109.46806 * 240.00049 * 2 1 3 25 25 H 1.09001 * 109.46910 * 119.99802 * 2 1 3 26 26 H 1.08990 * 109.47378 * 59.99917 * 3 2 1 27 27 H 1.09001 * 109.46906 * 300.00109 * 3 2 1 28 28 H 1.08999 * 109.47167 * 59.99345 * 4 3 2 29 29 H 1.09001 * 109.46553 * 299.99711 * 4 3 2 30 30 H 1.08990 * 109.47378 * 59.99607 * 5 4 3 31 31 H 1.09001 * 109.47182 * 299.99326 * 5 4 3 32 32 H 1.08003 * 126.08165 * 0.07251 * 7 6 5 33 33 H 0.96703 * 113.99355 * 270.03607 * 9 8 7 34 34 H 1.08992 * 109.47259 * 30.00563 * 11 10 8 35 35 H 1.09006 * 109.46968 * 150.00046 * 11 10 8 36 36 H 0.96996 * 120.00647 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.5870 2.8850 -0.0026 7 6 6.4053 3.5346 -0.9318 8 6 7.6983 3.2930 -0.5885 9 8 8.7990 3.7474 -1.2402 10 7 7.6895 2.5186 0.5189 11 6 8.8686 2.0198 1.2312 12 6 9.2721 0.6844 0.6613 13 1 8.7071 0.2508 -0.1506 14 6 10.3632 0.0166 1.1756 15 7 10.7151 -1.1490 0.6786 16 14 11.3409 0.7670 2.5793 17 1 10.7694 0.3201 3.8751 18 1 12.7569 0.3294 2.4857 19 1 11.2738 2.2480 2.4931 20 7 6.3540 2.2766 0.8653 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 0.9288 -0.8908 29 1 3.9336 0.9286 0.8892 30 1 3.7169 3.3991 0.8886 31 1 3.7163 3.3986 -0.8913 32 1 6.0698 4.1240 -1.7723 33 1 9.1167 3.1552 -1.9357 34 1 9.6894 2.7274 1.1152 35 1 8.6330 1.9070 2.2895 36 1 11.4829 -1.6186 1.0401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245942667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:22 Heat of formation + Delta-G solvation = -18.559854 kcal Electronic energy + Delta-G solvation = -16471.799099 eV Core-core repulsion = 13763.084503 eV Total energy + Delta-G solvation = -2708.714595 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.20672 -38.24799 -37.11305 -35.72991 -34.23369 -32.61390 -30.05867 -29.62490 -27.36304 -24.59888 -23.07951 -22.21609 -21.72197 -20.76785 -19.31941 -18.75582 -17.34330 -16.75685 -16.44048 -15.74524 -15.34951 -15.10685 -14.91972 -14.69871 -14.49771 -14.08445 -13.87008 -13.74417 -13.19736 -12.89149 -12.67920 -12.47779 -12.44417 -12.11064 -11.87131 -11.84192 -11.78119 -11.60384 -11.33352 -11.07334 -10.94664 -9.95253 -9.40421 -8.46730 -6.58051 0.86963 1.30452 1.32221 1.42104 1.65201 1.81583 2.21527 2.85712 3.17018 3.73015 3.89237 4.09771 4.22169 4.37189 4.43105 4.50136 4.58694 4.65849 4.73809 4.79727 4.91676 4.96964 5.03198 5.05595 5.15081 5.16950 5.28286 5.30370 5.42905 5.52918 5.58018 5.68830 5.82848 6.09716 6.42740 6.71457 6.90590 7.07378 8.69403 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.005329 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.146023 B = 5252.952505 C = 5998.140324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.109 4.109 4 C -0.111 4.111 5 C -0.027 4.027 6 C 0.066 3.934 7 C -0.294 4.294 8 C 0.249 3.751 9 O -0.473 6.473 10 N -0.366 5.366 11 C 0.237 3.763 12 C -0.553 4.553 13 H 0.029 0.971 14 C 0.026 3.974 15 N -0.933 5.933 16 Si 0.949 3.051 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.244 1.244 20 N -0.317 5.317 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.178 0.822 33 H 0.413 0.587 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 8.484 -2.491 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.146 4.146 4 C -0.150 4.150 5 C -0.066 4.066 6 C -0.099 4.099 7 C -0.324 4.324 8 C 0.077 3.923 9 O -0.279 6.279 10 N -0.156 5.156 11 C 0.117 3.883 12 C -0.591 4.591 13 H 0.047 0.953 14 C -0.175 4.175 15 N -0.571 5.571 16 Si 0.771 3.229 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.168 1.168 20 N -0.143 5.143 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.195 0.805 33 H 0.272 0.728 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.084 8.085 -1.077 16.276 hybrid contribution 1.206 -0.392 -0.588 1.398 sum -12.879 7.693 -1.665 15.093 Atomic orbital electron populations 1.21749 0.94660 1.01841 1.02302 1.21568 0.96801 0.97110 1.01406 1.21559 0.93070 0.96889 1.03111 1.21496 0.96671 0.95726 1.01092 1.20139 0.83626 0.98068 1.04755 1.22732 0.98205 0.95696 0.93276 1.21319 0.89372 1.14512 1.07199 1.19235 0.88830 0.94885 0.89317 1.84695 1.43322 1.47115 1.52774 1.49409 1.06090 1.37465 1.22628 1.19684 0.80894 0.94558 0.93157 1.21215 1.14027 1.03768 1.20106 0.95290 1.25769 0.97508 0.94759 0.99441 1.70004 1.27894 1.15569 1.43624 0.85696 0.78174 0.80243 0.78813 1.18774 1.19535 1.16781 1.77316 0.86172 1.24686 1.26174 0.92724 0.92319 0.91965 0.92664 0.93200 0.91099 0.90293 0.93319 0.93953 0.89292 0.87252 0.80480 0.72767 0.92169 0.93578 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.13 -2.55 5.93 30.59 0.18 -2.37 16 3 C -0.11 -2.05 5.21 30.59 0.16 -1.89 16 4 C -0.11 -2.89 5.17 30.59 0.16 -2.73 16 5 C -0.03 -0.68 5.79 29.85 0.17 -0.51 16 6 C 0.07 2.35 6.49 43.09 0.28 2.63 16 7 C -0.29 -10.20 10.75 22.12 0.24 -9.96 16 8 C 0.25 10.11 7.98 83.65 0.67 10.77 16 9 O -0.47 -16.87 13.57 -90.79 -1.23 -18.11 16 10 N -0.37 -17.23 3.60 -463.51 -1.67 -18.90 16 11 C 0.24 11.83 5.21 85.63 0.45 12.27 16 12 C -0.55 -32.10 9.94 25.60 0.25 -31.84 16 13 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 14 C 0.03 1.46 5.47 84.66 0.46 1.92 16 15 N -0.93 -56.72 13.96 21.45 0.30 -56.42 16 16 Si 0.95 42.08 27.47 68.60 1.88 43.97 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 20 N -0.32 -14.23 12.53 -47.41 -0.59 -14.82 16 21 H 0.05 0.79 8.14 -2.38 -0.02 0.78 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 2.04 8.12 -2.39 -0.02 2.02 16 32 H 0.18 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.41 11.63 9.06 -74.06 -0.67 10.96 16 34 H 0.06 2.85 7.19 -2.39 -0.02 2.83 16 35 H 0.05 2.27 7.57 -2.38 -0.02 2.25 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -70.19 307.53 2.75 -67.44 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.33 Total: 20.10 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.73 Total: -23.25 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -1.96 Total: -90.15 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -1.23 Total: -18.11 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.97 kcal Total: -70.19 2.75 -67.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245942667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.880 kcal (2) G-P(sol) polarization free energy of solvation -70.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds