Wall clock time and date at job start Sun Mar 29 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 O 1.42905 * 109.46728 * 59.99947 * 4 2 1 6 6 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 7 7 C 1.34941 * 126.03530 * 284.99930 * 6 2 1 8 8 C 1.35320 * 107.74504 * 179.97438 * 7 6 2 9 9 C 1.50702 * 126.03937 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46906 * 90.00407 * 9 8 7 11 11 C 1.50701 * 109.47274 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99781 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99630 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00141 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46978 * 89.99837 * 15 13 11 17 17 H 1.48498 * 109.47114 * 209.99619 * 15 13 11 18 18 H 1.48504 * 109.47056 * 329.99972 * 15 13 11 19 19 C 1.39871 * 107.92009 * 0.02562 * 8 7 6 20 20 N 1.30842 * 108.20089 * 359.73821 * 19 8 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 29 29 H 0.96705 * 113.99788 * 180.02562 * 5 4 2 30 30 H 1.07997 * 126.13168 * 359.96084 * 7 6 2 31 31 H 1.08996 * 109.47288 * 210.00291 * 9 8 7 32 32 H 1.08994 * 109.47164 * 330.00737 * 9 8 7 33 33 H 1.08996 * 109.47052 * 300.00028 * 10 9 8 34 34 H 1.09008 * 109.46930 * 60.00034 * 10 9 8 35 35 H 0.97003 * 119.99613 * 179.97438 * 14 13 11 36 36 H 1.07994 * 125.89800 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5636 -0.0476 -2.4160 6 7 2.0184 -0.6907 1.1962 7 6 2.0167 -0.1992 2.4529 8 6 2.5482 -1.1420 3.2652 9 6 2.7422 -1.0219 4.7548 10 6 1.4938 -1.5359 5.4748 11 6 1.6880 -1.4164 6.9645 12 1 2.6094 -1.0136 7.3583 13 6 0.6889 -1.8202 7.8245 14 7 0.8586 -1.7164 9.1245 15 14 -0.9052 -2.5162 7.1433 16 1 -0.7791 -3.9884 6.9951 17 1 -2.0189 -2.2061 8.0752 18 1 -1.1846 -1.9075 5.8179 19 6 2.8866 -2.2473 2.4777 20 7 2.5646 -1.9799 1.2380 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 3.1300 -0.7217 -1.2490 28 1 1.6766 -1.7489 -1.2493 29 1 1.8487 -0.4513 -3.2472 30 1 1.6562 0.7726 2.7561 31 1 3.6059 -1.6137 5.0577 32 1 2.9080 0.0231 5.0165 33 1 0.6301 -0.9440 5.1719 34 1 1.3279 -2.5811 5.2131 35 1 0.1555 -2.0001 9.7296 36 1 3.3328 -3.1646 2.8323 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:22 Heat of formation + Delta-G solvation = 13.627256 kcal Electronic energy + Delta-G solvation = -16865.813751 eV Core-core repulsion = 14158.494893 eV Total energy + Delta-G solvation = -2707.318857 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08023 -38.01997 -35.26344 -33.81849 -31.80601 -30.09126 -28.77985 -27.58699 -26.62982 -24.69388 -22.25919 -20.89257 -19.51918 -19.06401 -17.96424 -16.74859 -15.89880 -15.54202 -14.97194 -14.41057 -14.12673 -14.10655 -13.39217 -13.00005 -12.86773 -12.83189 -12.49440 -12.33595 -12.14667 -12.06868 -11.57521 -11.31791 -11.11525 -10.91396 -10.44621 -10.32365 -10.11479 -9.68150 -9.65088 -9.10376 -9.09164 -8.48004 -7.84283 -5.99346 -3.96484 2.18961 2.54347 3.24055 3.35171 3.42197 3.47777 3.78631 4.49971 4.50648 4.60328 4.68361 5.11370 5.22502 5.26340 5.30972 5.35667 5.42216 5.50580 5.57452 5.68089 5.83348 5.93742 6.00088 6.05059 6.30511 6.62991 6.69813 6.87615 7.09169 7.25122 7.34039 7.42175 7.55395 7.86666 8.02029 8.59897 9.06535 9.64290 11.14260 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039640 B = 0.005104 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.182281 B = 5484.378556 C = 5687.449520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.191 3.809 3 C -0.154 4.154 4 C 0.088 3.912 5 O -0.570 6.570 6 N -0.373 5.373 7 C 0.049 3.951 8 C -0.211 4.211 9 C -0.031 4.031 10 C -0.006 4.006 11 C -0.519 4.519 12 H 0.072 0.928 13 C 0.066 3.934 14 N -0.906 5.906 15 Si 0.879 3.121 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.051 3.949 20 N -0.311 5.311 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.384 0.616 30 H 0.167 0.833 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.013 0.987 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 3.958 -21.777 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.108 3.892 3 C -0.212 4.212 4 C 0.010 3.990 5 O -0.375 6.375 6 N -0.159 5.159 7 C -0.095 4.095 8 C -0.222 4.222 9 C -0.070 4.070 10 C -0.044 4.044 11 C -0.557 4.557 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.545 5.545 15 Si 0.706 3.294 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.135 4.135 20 N -0.132 5.132 21 H 0.101 0.899 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.232 0.768 30 H 0.185 0.815 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.160 3.960 -22.492 22.868 hybrid contribution -0.666 -0.545 0.354 0.930 sum 0.494 3.416 -22.138 22.405 Atomic orbital electron populations 1.22200 0.92686 1.03207 1.03238 1.20335 0.94803 0.91822 0.82258 1.22160 1.01899 0.93532 1.03606 1.22002 0.97869 0.95107 0.84028 1.86358 1.77690 1.57449 1.16043 1.48536 1.49416 1.12125 1.05802 1.22150 1.02780 1.00531 0.84063 1.20604 1.08745 0.94504 0.98315 1.19916 0.99936 1.01024 0.86102 1.19553 0.93371 0.95724 0.95738 1.21210 1.03421 1.41883 0.89166 0.90970 1.25012 0.98397 0.95344 0.94696 1.69923 1.34016 1.48614 1.01975 0.86792 0.83620 0.79768 0.79196 1.20342 1.21522 1.19084 1.23805 0.99939 0.99639 0.90114 1.77138 1.19065 0.95694 1.21338 0.89942 0.91732 0.91937 0.91532 0.91840 0.89624 0.92750 0.92032 0.76803 0.81543 0.91943 0.92288 0.96887 0.97106 0.92839 0.80291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.58 37.16 0.32 -1.43 16 2 C 0.19 2.26 1.07 -131.82 -0.14 2.12 16 3 C -0.15 -1.54 8.14 37.15 0.30 -1.24 16 4 C 0.09 0.93 5.53 37.16 0.21 1.13 16 5 O -0.57 -4.87 12.31 -35.23 -0.43 -5.30 16 6 N -0.37 -5.56 3.43 -48.66 -0.17 -5.73 16 7 C 0.05 0.77 10.51 -17.22 -0.18 0.59 16 8 C -0.21 -3.75 5.35 -105.05 -0.56 -4.32 16 9 C -0.03 -0.62 5.64 -27.88 -0.16 -0.78 16 10 C -0.01 -0.15 4.02 -27.88 -0.11 -0.27 16 11 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 15 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 18 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 19 C 0.05 0.85 11.96 -17.36 -0.21 0.64 16 20 N -0.31 -5.11 11.66 30.62 0.36 -4.76 16 21 H 0.08 0.81 7.68 -51.93 -0.40 0.42 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.64 7.37 -51.93 -0.38 0.25 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 29 H 0.38 1.58 9.12 45.56 0.42 2.00 16 30 H 0.17 2.28 7.55 -52.49 -0.40 1.88 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 34 H 0.01 0.26 7.57 -51.92 -0.39 -0.13 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.18 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 300.95 15.07 4.54 4.54 Total: -1.00 -33.28 300.95 -5.46 -38.74 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.89 Total: -0.68 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.96 Total: -16.93 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.96 Total: -37.95 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.43 Total: -5.30 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.28 -5.46 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.367 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds