Wall clock time and date at job start Sun Mar 29 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 O 1.42905 * 109.46728 * 59.99947 * 4 2 1 6 6 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 7 7 C 1.34941 * 126.03530 * 284.99930 * 6 2 1 8 8 C 1.35320 * 107.74504 * 179.97438 * 7 6 2 9 9 C 1.50702 * 126.03937 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46906 * 90.00407 * 9 8 7 11 11 C 1.50701 * 109.47274 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99781 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99630 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00141 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46978 * 89.99837 * 15 13 11 17 17 H 1.48498 * 109.47114 * 209.99619 * 15 13 11 18 18 H 1.48504 * 109.47056 * 329.99972 * 15 13 11 19 19 C 1.39871 * 107.92009 * 0.02562 * 8 7 6 20 20 N 1.30842 * 108.20089 * 359.73821 * 19 8 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 29 29 H 0.96705 * 113.99788 * 180.02562 * 5 4 2 30 30 H 1.07997 * 126.13168 * 359.96084 * 7 6 2 31 31 H 1.08996 * 109.47288 * 210.00291 * 9 8 7 32 32 H 1.08994 * 109.47164 * 330.00737 * 9 8 7 33 33 H 1.08996 * 109.47052 * 300.00028 * 10 9 8 34 34 H 1.09008 * 109.46930 * 60.00034 * 10 9 8 35 35 H 0.97003 * 119.99613 * 179.97438 * 14 13 11 36 36 H 1.07994 * 125.89800 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5636 -0.0476 -2.4160 6 7 2.0184 -0.6907 1.1962 7 6 2.0167 -0.1992 2.4529 8 6 2.5482 -1.1420 3.2652 9 6 2.7422 -1.0219 4.7548 10 6 1.4938 -1.5359 5.4748 11 6 1.6880 -1.4164 6.9645 12 1 2.6094 -1.0136 7.3583 13 6 0.6889 -1.8202 7.8245 14 7 0.8586 -1.7164 9.1245 15 14 -0.9052 -2.5162 7.1433 16 1 -0.7791 -3.9884 6.9951 17 1 -2.0189 -2.2061 8.0752 18 1 -1.1846 -1.9075 5.8179 19 6 2.8866 -2.2473 2.4777 20 7 2.5646 -1.9799 1.2380 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 3.1300 -0.7217 -1.2490 28 1 1.6766 -1.7489 -1.2493 29 1 1.8487 -0.4513 -3.2472 30 1 1.6562 0.7726 2.7561 31 1 3.6059 -1.6137 5.0577 32 1 2.9080 0.0231 5.0165 33 1 0.6301 -0.9440 5.1719 34 1 1.3279 -2.5811 5.2131 35 1 0.1555 -2.0001 9.7296 36 1 3.3328 -3.1646 2.8323 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:22 Heat of formation + Delta-G solvation = -9.635300 kcal Electronic energy + Delta-G solvation = -16866.822491 eV Core-core repulsion = 14158.494893 eV Total energy + Delta-G solvation = -2708.327598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.28007 -38.86534 -36.29370 -35.55594 -33.75886 -31.26164 -30.36528 -28.42109 -27.65112 -26.31843 -23.47026 -22.68226 -20.84372 -20.20512 -18.94881 -18.67173 -16.96945 -16.50396 -16.28798 -15.86875 -15.35904 -15.28806 -14.92795 -14.75877 -14.22120 -13.77865 -13.73727 -13.61596 -13.25626 -13.06665 -13.04730 -12.80487 -12.40625 -12.26052 -11.92588 -11.75569 -11.64008 -11.34209 -11.17754 -11.05140 -10.72715 -10.28279 -9.18267 -8.26293 -6.28892 0.96857 1.36568 1.37360 1.47835 1.50075 1.91793 2.38134 2.98592 3.09586 3.64456 3.77259 3.86687 4.00201 4.08030 4.43085 4.45692 4.48706 4.50483 4.61371 4.75321 4.77932 4.79544 4.88436 4.97161 5.09748 5.15478 5.17338 5.21016 5.53264 5.68108 5.71410 5.82088 6.18656 6.33773 6.74859 6.79514 6.80061 7.35808 8.90596 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039640 B = 0.005104 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.182281 B = 5484.378556 C = 5687.449520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.178 3.822 3 C -0.149 4.149 4 C 0.098 3.902 5 O -0.572 6.572 6 N -0.367 5.367 7 C 0.058 3.942 8 C -0.238 4.238 9 C -0.018 4.018 10 C 0.000 4.000 11 C -0.528 4.528 12 H 0.037 0.963 13 C 0.006 3.994 14 N -0.952 5.952 15 Si 0.947 3.053 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.252 1.252 19 C 0.043 3.957 20 N -0.322 5.322 21 H 0.098 0.902 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.404 0.596 30 H 0.189 0.811 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.013 0.987 34 H 0.011 0.989 35 H 0.265 0.735 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 4.308 -24.146 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.096 3.904 3 C -0.207 4.207 4 C 0.019 3.981 5 O -0.380 6.380 6 N -0.151 5.151 7 C -0.088 4.088 8 C -0.249 4.249 9 C -0.057 4.057 10 C -0.038 4.038 11 C -0.566 4.566 12 H 0.055 0.945 13 C -0.190 4.190 14 N -0.593 5.593 15 Si 0.771 3.229 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.176 1.176 19 C -0.142 4.142 20 N -0.143 5.143 21 H 0.117 0.883 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.255 0.745 30 H 0.206 0.794 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.094 4.307 -24.916 25.285 hybrid contribution -0.272 -0.586 1.038 1.223 sum -0.178 3.721 -23.877 24.166 Atomic orbital electron populations 1.22170 0.92086 1.02536 1.04037 1.20727 0.95291 0.92708 0.81683 1.22143 1.01641 0.92270 1.04605 1.21768 0.97460 0.94434 0.84393 1.86314 1.77703 1.57493 1.16516 1.48833 1.48214 1.11601 1.06477 1.22448 1.01271 1.00875 0.84205 1.20388 1.11413 0.96039 0.97097 1.19629 0.97761 1.00638 0.87658 1.19467 0.95407 0.95844 0.93040 1.21567 1.02118 1.41101 0.91856 0.94489 1.25937 1.02370 0.95829 0.94868 1.70067 1.35536 1.50155 1.03546 0.85700 0.78879 0.79294 0.79000 1.19421 1.20885 1.17630 1.24062 1.00013 1.00060 0.90101 1.77117 1.19434 0.96634 1.21135 0.88311 0.91754 0.93296 0.90944 0.92208 0.88220 0.93129 0.93112 0.74462 0.79416 0.92299 0.92305 0.96843 0.97098 0.92576 0.78941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.58 71.98 0.62 -2.39 16 2 C 0.18 3.78 1.07 3.60 0.00 3.79 16 3 C -0.15 -2.56 8.14 71.98 0.59 -1.98 16 4 C 0.10 1.86 5.53 71.98 0.40 2.25 16 5 O -0.57 -8.14 12.31 -148.98 -1.83 -9.97 16 6 N -0.37 -10.19 3.43 -307.85 -1.06 -11.24 16 7 C 0.06 1.71 10.51 83.54 0.88 2.59 16 8 C -0.24 -8.17 5.35 -20.14 -0.11 -8.28 16 9 C -0.02 -0.72 5.64 29.85 0.17 -0.55 16 10 C 0.00 0.00 4.02 29.85 0.12 0.12 16 11 C -0.53 -30.83 9.66 25.60 0.25 -30.59 16 12 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 13 C 0.01 0.38 5.47 84.65 0.46 0.85 16 14 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 15 Si 0.95 45.53 27.47 68.60 1.88 47.41 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 18 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 19 C 0.04 1.38 11.96 85.24 1.02 2.40 16 20 N -0.32 -10.08 11.66 -57.02 -0.66 -10.74 16 21 H 0.10 1.65 7.68 -2.39 -0.02 1.63 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.07 1.16 7.37 -2.39 -0.02 1.15 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.46 7.68 -2.39 -0.02 1.44 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 1.07 8.04 -2.39 -0.02 1.05 16 29 H 0.40 2.18 9.12 -74.05 -0.68 1.50 16 30 H 0.19 4.63 7.55 -2.91 -0.02 4.60 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 34 H 0.01 0.51 7.57 -2.38 -0.02 0.49 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.19 5.39 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -70.85 300.95 3.35 -67.51 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.32 Total: 8.91 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 4.39 Total: -31.79 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -1.42 Total: -82.08 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.83 Total: -9.97 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.41 kcal Total: -70.85 3.35 -67.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.871 kcal (2) G-P(sol) polarization free energy of solvation -70.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds