Wall clock time and date at job start Sun Mar 29 2020 21:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47056 * 144.28642 * 3 2 1 5 5 N 1.46903 * 109.47154 * 185.13170 * 4 3 2 6 6 C 1.46893 * 111.00064 * 160.35511 * 5 4 3 7 7 C 1.50699 * 109.47349 * 288.44073 * 6 5 4 8 8 H 1.07994 * 119.99845 * 355.08015 * 7 6 5 9 9 C 1.37880 * 119.99826 * 175.07330 * 7 6 5 10 10 N 1.31516 * 119.99512 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00144 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47270 * 89.99680 * 11 9 7 13 13 H 1.48504 * 109.46899 * 209.99532 * 11 9 7 14 14 H 1.48498 * 109.47196 * 329.99235 * 11 9 7 15 15 C 1.46903 * 110.99913 * 284.31417 * 5 4 3 16 16 H 1.09000 * 109.57527 * 54.83740 * 15 5 4 17 17 C 1.53170 * 109.52158 * 175.00059 * 15 5 4 18 18 C 1.53181 * 109.03899 * 176.88543 * 17 15 5 19 19 C 1.53090 * 109.15744 * 303.01737 * 18 17 15 20 20 O 1.42906 * 109.41810 * 57.60922 * 19 18 17 21 21 C 1.42899 * 114.09652 * 298.83891 * 20 19 18 22 22 H 1.09005 * 109.46692 * 24.28576 * 3 2 1 23 23 H 1.08995 * 109.46948 * 264.29140 * 3 2 1 24 24 H 1.08997 * 109.47019 * 65.13070 * 4 3 2 25 25 H 1.08999 * 109.46944 * 305.13517 * 4 3 2 26 26 H 1.09006 * 109.46961 * 48.44380 * 6 5 4 27 27 H 1.09001 * 109.46949 * 168.43926 * 6 5 4 28 28 H 0.97007 * 119.99496 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.54453 * 296.75308 * 17 15 5 30 30 H 1.09001 * 109.55002 * 57.01592 * 17 15 5 31 31 H 1.08998 * 109.52012 * 62.91991 * 18 17 15 32 32 H 1.08997 * 109.52253 * 183.11429 * 18 17 15 33 33 H 1.09006 * 109.47831 * 177.58860 * 19 18 17 34 34 H 1.08996 * 109.48220 * 297.61961 * 19 18 17 35 35 H 1.09000 * 109.48277 * 301.17799 * 21 20 19 36 36 H 1.08995 * 109.48291 * 181.14114 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1721 -0.8420 5 7 4.5813 1.1020 -0.9437 6 6 5.0683 1.8906 -2.0833 7 6 4.7052 1.1930 -3.3688 8 1 4.2376 0.2199 -3.3416 9 6 4.9698 1.7971 -4.5796 10 7 4.6534 1.1880 -5.7014 11 14 5.7791 3.4801 -4.6266 12 1 7.2548 3.3188 -4.6663 13 1 5.3285 4.2124 -5.8373 14 1 5.3974 4.2470 -3.4136 15 6 5.2173 1.5362 0.3073 16 1 4.8243 0.9515 1.1389 17 6 6.7322 1.3324 0.2089 18 6 7.3915 1.8602 1.4869 19 6 7.0143 3.3319 1.6758 20 8 5.5915 3.4547 1.7284 21 6 4.9241 3.0204 0.5418 22 1 2.9717 -0.9360 -0.4227 23 1 2.9713 0.1030 1.0225 24 1 2.8307 2.1113 -0.3690 25 1 2.6810 1.1195 -1.8394 26 1 4.6089 2.8790 -2.0639 27 1 6.1516 1.9921 -2.0185 28 1 4.8399 1.6129 -6.5533 29 1 6.9508 0.2703 0.0978 30 1 7.1184 1.8775 -0.6524 31 1 7.0423 1.2820 2.3423 32 1 8.4744 1.7697 1.4022 33 1 7.4457 3.7011 2.6063 34 1 7.3989 3.9159 0.8398 35 1 5.2814 3.6004 -0.3091 36 1 3.8498 3.1652 0.6553 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254385611.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:58 Heat of formation + Delta-G solvation = -17.725719 kcal Electronic energy + Delta-G solvation = -17483.483604 eV Core-core repulsion = 14774.805179 eV Total energy + Delta-G solvation = -2708.678424 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.69688 -37.15978 -36.07704 -33.08170 -32.69147 -31.22744 -29.57369 -26.89711 -24.91950 -23.72244 -22.60315 -21.03359 -18.92454 -17.30046 -17.13122 -16.22045 -15.84302 -15.01162 -14.94909 -14.73089 -14.22811 -14.02563 -13.52239 -13.16907 -12.89200 -12.62383 -12.49758 -12.45043 -12.12946 -11.80272 -11.56195 -11.25345 -11.00079 -10.76107 -10.63020 -10.46646 -10.32876 -9.99037 -9.94849 -9.50708 -9.35008 -8.63581 -7.50717 -6.12649 -4.10522 2.96448 3.02035 3.21016 3.28616 3.30379 3.89350 4.17152 4.33935 4.72945 4.95784 4.99297 5.08314 5.16299 5.20043 5.30171 5.40414 5.46424 5.55374 5.65365 5.80986 5.85380 5.87762 5.95481 6.08945 6.16369 6.40624 6.42236 6.49622 6.72940 6.79360 7.24106 7.49964 7.69139 7.78360 7.87500 8.55001 8.97334 9.48602 11.00287 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.010736 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.442670 B = 2607.441046 C = 4136.554631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.218 3.782 3 C -0.025 4.025 4 C 0.059 3.941 5 N -0.512 5.512 6 C 0.155 3.845 7 C -0.511 4.511 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.897 5.897 11 Si 0.869 3.131 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.050 3.950 16 H 0.084 0.916 17 C -0.118 4.118 18 C -0.153 4.153 19 C 0.058 3.942 20 O -0.386 6.386 21 C 0.023 3.977 22 H 0.119 0.881 23 H 0.100 0.900 24 H 0.035 0.965 25 H 0.100 0.900 26 H -0.006 1.006 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 2.042 13.724 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.100 4.100 3 C -0.065 4.065 4 C -0.070 4.070 5 N -0.236 5.236 6 C 0.029 3.971 7 C -0.549 4.549 8 H 0.101 0.899 9 C -0.132 4.132 10 N -0.535 5.535 11 Si 0.696 3.304 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.060 4.060 16 H 0.102 0.898 17 C -0.155 4.155 18 C -0.192 4.192 19 C -0.019 4.019 20 O -0.303 6.303 21 C -0.055 4.055 22 H 0.137 0.863 23 H 0.118 0.882 24 H 0.053 0.947 25 H 0.118 0.882 26 H 0.012 0.988 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.436 1.648 13.592 14.116 hybrid contribution 0.867 1.652 -0.377 1.903 sum 4.303 3.300 13.215 14.284 Atomic orbital electron populations 1.81170 1.13243 1.09263 1.09467 1.29320 0.95399 0.92685 0.92554 1.19354 0.80608 1.03519 1.03050 1.21982 0.89574 0.94157 1.01336 1.62078 1.03761 1.55692 1.02090 1.20338 0.95690 0.91754 0.89293 1.21010 1.40414 1.05747 0.87750 0.89885 1.24894 0.95390 0.97239 0.95661 1.69887 1.47761 1.38399 0.97497 0.86964 0.80241 0.85266 0.77909 1.20121 1.21137 1.19239 1.22379 0.95709 0.93692 0.94197 0.89802 1.21718 0.94050 1.02676 0.97103 1.22199 1.00888 0.96951 0.99118 1.22576 0.81867 0.95816 1.01631 1.87876 1.18665 1.85371 1.38417 1.23459 0.97696 0.96557 0.87767 0.86350 0.88207 0.94709 0.88210 0.98841 0.95001 0.92589 0.90419 0.90981 0.91217 0.91005 0.89342 0.93428 0.92674 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.79 18.54 42.15 0.78 -7.01 16 2 C 0.22 3.18 15.43 -20.76 -0.32 2.86 16 3 C -0.02 -0.30 5.73 -29.52 -0.17 -0.47 16 4 C 0.06 0.93 4.66 -3.82 -0.02 0.91 16 5 N -0.51 -8.85 4.37 -227.92 -1.00 -9.84 16 6 C 0.15 3.30 2.73 -4.98 -0.01 3.29 16 7 C -0.51 -13.32 8.83 -34.44 -0.30 -13.62 16 8 H 0.08 2.36 8.04 -52.49 -0.42 1.94 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -26.39 13.96 55.43 0.77 -25.62 16 11 Si 0.87 20.38 27.57 -169.99 -4.69 15.69 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.00 6.40 56.52 0.36 -5.64 16 15 C 0.05 0.72 2.34 -67.57 -0.16 0.56 16 16 H 0.08 1.07 6.83 -51.93 -0.35 0.71 16 17 C -0.12 -1.62 5.23 -26.55 -0.14 -1.75 16 18 C -0.15 -1.69 6.14 -26.59 -0.16 -1.85 16 19 C 0.06 0.68 6.84 37.20 0.25 0.94 16 20 O -0.39 -5.54 10.77 -35.23 -0.38 -5.92 16 21 C 0.02 0.35 5.51 37.21 0.20 0.55 16 22 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 23 H 0.10 0.98 7.03 -51.93 -0.36 0.62 16 24 H 0.03 0.52 5.95 -51.93 -0.31 0.21 16 25 H 0.10 1.87 7.09 -51.93 -0.37 1.50 16 26 H -0.01 -0.13 5.78 -51.93 -0.30 -0.43 16 27 H 0.03 0.68 5.31 -51.93 -0.28 0.41 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.11 6.01 -51.93 -0.31 0.80 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.91 6.62 -51.93 -0.34 0.56 16 36 H 0.09 1.30 6.37 -51.93 -0.33 0.96 16 LS Contribution 286.93 15.07 4.32 4.32 Total: -1.00 -29.89 286.93 -6.20 -36.09 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.09 Total: -0.93 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.92 Total: -6.78 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.56 Total: -42.47 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.38 Total: -5.92 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.69 Total: 15.69 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.89 -6.20 -36.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254385611.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.360 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds