Wall clock time and date at job start Sun Mar 29 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47056 * 144.28642 * 3 2 1 5 5 N 1.46903 * 109.47154 * 185.13170 * 4 3 2 6 6 C 1.46893 * 111.00064 * 160.35511 * 5 4 3 7 7 C 1.50699 * 109.47349 * 288.44073 * 6 5 4 8 8 H 1.07994 * 119.99845 * 355.08015 * 7 6 5 9 9 C 1.37880 * 119.99826 * 175.07330 * 7 6 5 10 10 N 1.31516 * 119.99512 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00144 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47270 * 89.99680 * 11 9 7 13 13 H 1.48504 * 109.46899 * 209.99532 * 11 9 7 14 14 H 1.48498 * 109.47196 * 329.99235 * 11 9 7 15 15 C 1.46903 * 110.99913 * 284.31417 * 5 4 3 16 16 H 1.09000 * 109.57527 * 54.83740 * 15 5 4 17 17 C 1.53170 * 109.52158 * 175.00059 * 15 5 4 18 18 C 1.53181 * 109.03899 * 176.88543 * 17 15 5 19 19 C 1.53090 * 109.15744 * 303.01737 * 18 17 15 20 20 O 1.42906 * 109.41810 * 57.60922 * 19 18 17 21 21 C 1.42899 * 114.09652 * 298.83891 * 20 19 18 22 22 H 1.09005 * 109.46692 * 24.28576 * 3 2 1 23 23 H 1.08995 * 109.46948 * 264.29140 * 3 2 1 24 24 H 1.08997 * 109.47019 * 65.13070 * 4 3 2 25 25 H 1.08999 * 109.46944 * 305.13517 * 4 3 2 26 26 H 1.09006 * 109.46961 * 48.44380 * 6 5 4 27 27 H 1.09001 * 109.46949 * 168.43926 * 6 5 4 28 28 H 0.97007 * 119.99496 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.54453 * 296.75308 * 17 15 5 30 30 H 1.09001 * 109.55002 * 57.01592 * 17 15 5 31 31 H 1.08998 * 109.52012 * 62.91991 * 18 17 15 32 32 H 1.08997 * 109.52253 * 183.11429 * 18 17 15 33 33 H 1.09006 * 109.47831 * 177.58860 * 19 18 17 34 34 H 1.08996 * 109.48220 * 297.61961 * 19 18 17 35 35 H 1.09000 * 109.48277 * 301.17799 * 21 20 19 36 36 H 1.08995 * 109.48291 * 181.14114 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1721 -0.8420 5 7 4.5813 1.1020 -0.9437 6 6 5.0683 1.8906 -2.0833 7 6 4.7052 1.1930 -3.3688 8 1 4.2376 0.2199 -3.3416 9 6 4.9698 1.7971 -4.5796 10 7 4.6534 1.1880 -5.7014 11 14 5.7791 3.4801 -4.6266 12 1 7.2548 3.3188 -4.6663 13 1 5.3285 4.2124 -5.8373 14 1 5.3974 4.2470 -3.4136 15 6 5.2173 1.5362 0.3073 16 1 4.8243 0.9515 1.1389 17 6 6.7322 1.3324 0.2089 18 6 7.3915 1.8602 1.4869 19 6 7.0143 3.3319 1.6758 20 8 5.5915 3.4547 1.7284 21 6 4.9241 3.0204 0.5418 22 1 2.9717 -0.9360 -0.4227 23 1 2.9713 0.1030 1.0225 24 1 2.8307 2.1113 -0.3690 25 1 2.6810 1.1195 -1.8394 26 1 4.6089 2.8790 -2.0639 27 1 6.1516 1.9921 -2.0185 28 1 4.8399 1.6129 -6.5533 29 1 6.9508 0.2703 0.0978 30 1 7.1184 1.8775 -0.6524 31 1 7.0423 1.2820 2.3423 32 1 8.4744 1.7697 1.4022 33 1 7.4457 3.7011 2.6063 34 1 7.3989 3.9159 0.8398 35 1 5.2814 3.6004 -0.3091 36 1 3.8498 3.1652 0.6553 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254385611.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:57 Heat of formation + Delta-G solvation = -38.563817 kcal Electronic energy + Delta-G solvation = -17484.387211 eV Core-core repulsion = 14774.805179 eV Total energy + Delta-G solvation = -2709.582032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84822 -38.37676 -37.36196 -34.72653 -34.08872 -32.42860 -31.03100 -28.44095 -26.02281 -24.84975 -24.28607 -22.16187 -20.21685 -19.05108 -18.44726 -17.39971 -16.98316 -16.50130 -16.11618 -15.97111 -15.62046 -15.37017 -14.85777 -14.46018 -14.29183 -14.13272 -14.00152 -13.51279 -13.36754 -13.10751 -12.89153 -12.62069 -12.35731 -12.34366 -11.88190 -11.75602 -11.64538 -11.54107 -11.39255 -11.02048 -10.73231 -10.56640 -8.89620 -8.24031 -6.25146 1.34647 1.36926 1.44851 1.76032 1.84703 2.35658 2.78409 3.05421 3.10247 3.53452 3.86824 3.97927 4.10089 4.11816 4.21160 4.32943 4.36359 4.51499 4.63975 4.71606 4.79952 4.85667 4.89169 5.01797 5.07524 5.16557 5.18569 5.24273 5.36064 5.45082 5.63769 6.00961 6.18388 6.40707 6.61489 6.69215 6.83873 7.37944 8.92409 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.010736 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.442670 B = 2607.441046 C = 4136.554631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.241 3.759 3 C -0.011 4.011 4 C 0.059 3.941 5 N -0.518 5.518 6 C 0.167 3.833 7 C -0.506 4.506 8 H 0.045 0.955 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.933 3.067 12 H -0.265 1.265 13 H -0.289 1.289 14 H -0.250 1.250 15 C 0.051 3.949 16 H 0.112 0.888 17 C -0.121 4.121 18 C -0.144 4.144 19 C 0.050 3.950 20 O -0.394 6.394 21 C 0.028 3.972 22 H 0.127 0.873 23 H 0.140 0.860 24 H 0.047 0.953 25 H 0.060 0.940 26 H -0.010 1.010 27 H 0.038 0.962 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.041 0.959 35 H 0.034 0.966 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 2.779 16.364 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.076 4.076 3 C -0.051 4.051 4 C -0.070 4.070 5 N -0.242 5.242 6 C 0.040 3.960 7 C -0.544 4.544 8 H 0.064 0.936 9 C -0.188 4.188 10 N -0.590 5.590 11 Si 0.757 3.243 12 H -0.190 1.190 13 H -0.215 1.215 14 H -0.174 1.174 15 C -0.057 4.057 16 H 0.130 0.870 17 C -0.158 4.158 18 C -0.182 4.182 19 C -0.027 4.027 20 O -0.312 6.312 21 C -0.051 4.051 22 H 0.145 0.855 23 H 0.157 0.843 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.008 0.992 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.844 2.383 16.269 17.142 hybrid contribution 0.441 1.359 -1.155 1.837 sum 5.285 3.743 15.115 16.444 Atomic orbital electron populations 1.81196 1.14759 1.10758 1.11197 1.29635 0.95607 0.91282 0.91047 1.19375 0.78889 1.02268 1.04550 1.21910 0.88662 0.96379 1.00083 1.61961 1.04657 1.55157 1.02415 1.20038 0.95910 0.91262 0.88781 1.21306 1.38691 1.04408 0.90027 0.93623 1.25753 0.96414 1.01354 0.95315 1.70049 1.50175 1.40548 0.98226 0.85927 0.79583 0.80505 0.78247 1.18986 1.21498 1.17392 1.22509 0.96149 0.93968 0.93109 0.87029 1.21736 0.93650 1.02578 0.97865 1.22149 1.01808 0.96315 0.97900 1.22825 0.80575 0.96438 1.02835 1.87871 1.20115 1.85438 1.37792 1.23341 0.98033 0.96255 0.87431 0.85465 0.84271 0.93496 0.92095 0.99240 0.94461 0.92727 0.90332 0.93180 0.89800 0.89186 0.86777 0.94014 0.94801 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.92 18.54 20.01 0.37 -16.55 16 2 C 0.24 6.70 15.43 89.44 1.38 8.08 16 3 C -0.01 -0.24 5.73 28.79 0.16 -0.07 16 4 C 0.06 1.79 4.66 86.30 0.40 2.20 16 5 N -0.52 -17.17 4.37 -875.01 -3.83 -21.00 16 6 C 0.17 7.03 2.73 85.56 0.23 7.26 16 7 C -0.51 -26.99 8.83 25.60 0.23 -26.76 16 8 H 0.05 2.71 8.04 -2.91 -0.02 2.69 16 9 C 0.01 0.49 5.47 84.65 0.46 0.95 16 10 N -0.95 -57.73 13.96 21.45 0.30 -57.43 16 11 Si 0.93 42.24 27.57 68.60 1.89 44.13 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 13 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.25 -10.50 6.40 99.48 0.64 -9.86 16 15 C 0.05 1.33 2.34 45.00 0.11 1.43 16 16 H 0.11 2.32 6.83 -2.39 -0.02 2.31 16 17 C -0.12 -2.98 5.23 30.71 0.16 -2.82 16 18 C -0.14 -2.62 6.14 30.68 0.19 -2.43 16 19 C 0.05 0.99 6.84 72.01 0.49 1.49 16 20 O -0.39 -10.07 10.77 -148.98 -1.60 -11.67 16 21 C 0.03 0.75 5.51 72.01 0.40 1.15 16 22 H 0.13 2.71 8.14 -2.38 -0.02 2.69 16 23 H 0.14 2.08 7.03 -2.39 -0.02 2.07 16 24 H 0.05 1.31 5.95 -2.39 -0.01 1.29 16 25 H 0.06 2.33 7.09 -2.39 -0.02 2.31 16 26 H -0.01 -0.43 5.78 -2.38 -0.01 -0.45 16 27 H 0.04 1.56 5.31 -2.39 -0.01 1.55 16 28 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.46 6.01 -2.39 -0.01 1.44 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.03 1.05 6.62 -2.39 -0.02 1.04 16 36 H 0.10 2.46 6.37 -2.39 -0.02 2.45 16 Total: -1.00 -66.63 286.93 2.35 -64.28 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.00 Total: 7.77 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 4.21 Total: -9.52 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -3.16 Total: -94.98 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.60 Total: -11.67 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.89 Total: 44.13 kcal Total: -66.63 2.35 -64.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254385611.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.714 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds