Wall clock time and date at job start Sun Mar 29 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47196 * 2 1 4 4 C 1.34329 * 126.16299 * 124.98766 * 3 2 1 5 5 O 1.34754 * 107.11101 * 179.81186 * 4 3 2 6 6 C 1.33972 * 107.75313 * 0.35509 * 5 4 3 7 7 C 1.50698 * 125.61377 * 179.89956 * 6 5 4 8 8 N 1.46896 * 109.47416 * 269.69010 * 7 6 5 9 9 C 1.46896 * 111.00580 * 174.94013 * 8 7 6 10 10 H 1.09000 * 109.47011 * 33.74788 * 9 8 7 11 11 C 1.50694 * 109.47500 * 153.75031 * 9 8 7 12 12 H 1.08002 * 120.00221 * 359.97438 * 11 9 8 13 13 C 1.37885 * 119.99942 * 180.02562 * 11 9 8 14 14 N 1.31513 * 119.99975 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99710 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47256 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46631 * 120.00133 * 15 13 11 18 18 H 1.48497 * 109.47313 * 239.99874 * 15 13 11 19 19 C 1.52997 * 109.47080 * 273.75366 * 9 8 7 20 20 C 1.53001 * 109.46853 * 297.96324 * 19 9 8 21 21 N 1.30249 * 108.76138 * 359.63523 * 6 5 4 22 22 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47520 * 300.00171 * 1 2 3 24 24 H 1.09003 * 109.47222 * 60.00376 * 1 2 3 25 25 H 1.08999 * 109.47046 * 239.99702 * 2 1 3 26 26 H 1.09000 * 109.46883 * 120.00000 * 2 1 3 27 27 H 1.08003 * 126.44373 * 0.04561 * 4 3 2 28 28 H 1.09006 * 109.46762 * 149.69530 * 7 6 5 29 29 H 1.08996 * 109.47764 * 29.69725 * 7 6 5 30 30 H 1.00899 * 110.99771 * 298.89709 * 8 7 6 31 31 H 0.96999 * 119.99754 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.47309 * 177.96484 * 19 9 8 33 33 H 1.09001 * 109.47304 * 57.96379 * 19 9 8 34 34 H 1.09004 * 109.47083 * 174.45352 * 20 19 9 35 35 H 1.08998 * 109.47400 * 54.45175 * 20 19 9 36 36 H 1.08997 * 109.47358 * 294.45313 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8828 1.9608 0.8885 5 8 3.0729 3.2446 0.5257 6 6 2.3345 3.4735 -0.5685 7 6 2.2469 4.7825 -1.3100 8 7 1.1482 5.5858 -0.7572 9 6 1.1078 6.9182 -1.3745 10 1 1.4241 6.8463 -2.4151 11 6 -0.2978 7.4580 -1.3129 12 1 -1.0828 6.8699 -0.8608 13 6 -0.5819 8.7023 -1.8346 14 7 0.3739 9.4182 -2.3856 15 14 -2.3245 9.3711 -1.7589 16 1 -3.2069 8.3791 -1.0938 17 1 -2.3348 10.6389 -0.9858 18 1 -2.8167 9.6272 -3.1363 19 6 2.0489 7.8588 -0.6193 20 6 1.5753 7.9996 0.8287 21 7 1.7095 2.3767 -0.8891 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.3329 1.4593 1.7325 28 1 2.0601 4.5898 -2.3665 29 1 3.1853 5.3260 -1.2002 30 1 0.2642 5.1111 -0.8635 31 1 0.1739 10.2933 -2.7529 32 1 2.0465 8.8375 -1.0991 33 1 3.0593 7.4500 -0.6330 34 1 2.2987 8.5893 1.3919 35 1 1.4834 7.0111 1.2787 36 1 0.6065 8.4986 0.8473 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:15 Heat of formation + Delta-G solvation = 7.005371 kcal Electronic energy + Delta-G solvation = -16885.530005 eV Core-core repulsion = 14177.924001 eV Total energy + Delta-G solvation = -2707.606004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.05131 -36.47025 -35.42590 -33.38307 -32.28094 -30.86122 -29.19665 -26.84859 -24.76123 -23.78712 -23.14693 -21.03601 -20.66463 -19.08851 -17.05645 -16.35011 -16.31318 -15.10173 -14.78946 -14.48451 -14.10232 -13.78107 -13.55192 -13.46145 -12.80091 -12.36862 -12.18252 -11.88590 -11.56401 -11.42049 -11.26181 -10.95683 -10.81168 -10.63577 -10.41383 -10.24308 -10.12496 -9.82811 -9.41150 -8.84722 -8.56672 -8.48811 -7.41859 -6.05201 -4.10399 1.69800 2.86353 3.05934 3.28041 3.36450 3.40734 4.19440 4.39920 4.77478 4.96129 5.21614 5.25982 5.33922 5.44340 5.49852 5.75451 5.78701 5.84531 5.99155 6.13709 6.16175 6.26324 6.48024 6.55411 6.68594 6.82298 7.18328 7.21430 7.44054 7.69543 7.73719 7.79262 8.02144 8.17838 8.27823 8.54622 8.96485 9.54377 11.01028 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031580 B = 0.005486 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.435495 B = 5102.748524 C = 5621.305746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.015 4.015 4 C -0.092 4.092 5 O -0.195 6.195 6 C 0.223 3.777 7 C 0.149 3.851 8 N -0.680 5.680 9 C 0.217 3.783 10 H 0.006 0.994 11 C -0.513 4.513 12 H 0.060 0.940 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.103 4.103 20 C -0.120 4.120 21 N -0.486 5.486 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.208 0.792 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.340 0.660 31 H 0.261 0.739 32 H 0.088 0.912 33 H 0.011 0.989 34 H 0.014 0.986 35 H 0.046 0.954 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 -13.742 4.660 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.135 4.135 4 C -0.163 4.163 5 O -0.081 6.081 6 C 0.016 3.984 7 C 0.019 3.981 8 N -0.314 5.314 9 C 0.110 3.890 10 H 0.024 0.976 11 C -0.551 4.551 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.142 4.142 20 C -0.177 4.177 21 N -0.216 5.216 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.224 0.776 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.158 0.842 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.065 0.935 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.233 -13.353 4.609 14.747 hybrid contribution -0.741 0.208 -0.133 0.782 sum 3.491 -13.145 4.476 14.318 Atomic orbital electron populations 1.21672 0.94348 1.01309 1.02939 1.19825 0.96642 0.88675 1.02446 1.21749 0.99905 0.97662 0.94219 1.24662 1.05222 0.82761 1.03611 1.84486 1.55934 1.28446 1.39211 1.26647 0.89455 0.97184 0.85148 1.20333 0.99484 0.84500 0.93818 1.60701 1.05416 1.04721 1.60530 1.19187 0.96075 0.82363 0.91348 0.97607 1.21170 0.93333 1.02303 1.38337 0.92134 1.24866 0.97141 0.96712 0.95011 1.69890 1.31691 1.12039 1.39045 0.86494 0.84669 0.78957 0.77643 1.19758 1.20983 1.21089 1.21458 0.94734 1.02116 0.95891 1.21443 0.99701 0.99841 0.96746 1.70336 1.24162 0.99337 1.27789 0.92566 0.92770 0.91671 0.90582 0.90689 0.77553 0.91544 0.88876 0.84250 0.92936 0.89380 0.97002 0.96735 0.93508 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.88 37.16 0.37 -1.20 16 2 C -0.04 -0.40 6.50 -27.88 -0.18 -0.59 16 3 C -0.02 -0.22 6.37 -82.81 -0.53 -0.75 16 4 C -0.09 -1.23 12.06 29.35 0.35 -0.87 16 5 O -0.20 -3.27 10.78 5.34 0.06 -3.21 16 6 C 0.22 3.95 7.90 -12.95 -0.10 3.84 16 7 C 0.15 2.72 6.08 -4.98 -0.03 2.69 16 8 N -0.68 -14.34 5.50 -109.23 -0.60 -14.94 16 9 C 0.22 5.26 2.30 -68.87 -0.16 5.10 16 10 H 0.01 0.16 7.84 -51.93 -0.41 -0.24 16 11 C -0.51 -13.55 7.34 -34.44 -0.25 -13.80 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -24.61 11.34 55.43 0.63 -23.98 16 15 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.10 -2.45 5.58 -26.73 -0.15 -2.60 16 20 C -0.12 -2.69 9.46 37.16 0.35 -2.34 16 21 N -0.49 -8.45 11.28 -7.36 -0.08 -8.54 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.60 8.11 -51.93 -0.42 0.17 16 27 H 0.21 1.82 8.06 -52.48 -0.42 1.39 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.09 1.63 7.40 -51.93 -0.38 1.25 16 30 H 0.34 7.28 8.24 -39.29 -0.32 6.96 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.09 2.31 6.13 -51.93 -0.32 1.99 16 33 H 0.01 0.25 7.43 -51.93 -0.39 -0.13 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 36 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 LS Contribution 301.35 15.07 4.54 4.54 Total: -1.00 -28.81 301.35 -6.41 -35.21 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.51 Total: 3.84 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.42 Total: -8.88 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.05 Total: -47.46 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.06 Total: -3.21 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.81 -6.41 -35.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.218 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds