Wall clock time and date at job start Sun Mar 29 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47196 * 2 1 4 4 C 1.34329 * 126.16299 * 124.98766 * 3 2 1 5 5 O 1.34754 * 107.11101 * 179.81186 * 4 3 2 6 6 C 1.33972 * 107.75313 * 0.35509 * 5 4 3 7 7 C 1.50698 * 125.61377 * 179.89956 * 6 5 4 8 8 N 1.46896 * 109.47416 * 269.69010 * 7 6 5 9 9 C 1.46896 * 111.00580 * 174.94013 * 8 7 6 10 10 H 1.09000 * 109.47011 * 33.74788 * 9 8 7 11 11 C 1.50694 * 109.47500 * 153.75031 * 9 8 7 12 12 H 1.08002 * 120.00221 * 359.97438 * 11 9 8 13 13 C 1.37885 * 119.99942 * 180.02562 * 11 9 8 14 14 N 1.31513 * 119.99975 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99710 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47256 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46631 * 120.00133 * 15 13 11 18 18 H 1.48497 * 109.47313 * 239.99874 * 15 13 11 19 19 C 1.52997 * 109.47080 * 273.75366 * 9 8 7 20 20 C 1.53001 * 109.46853 * 297.96324 * 19 9 8 21 21 N 1.30249 * 108.76138 * 359.63523 * 6 5 4 22 22 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47520 * 300.00171 * 1 2 3 24 24 H 1.09003 * 109.47222 * 60.00376 * 1 2 3 25 25 H 1.08999 * 109.47046 * 239.99702 * 2 1 3 26 26 H 1.09000 * 109.46883 * 120.00000 * 2 1 3 27 27 H 1.08003 * 126.44373 * 0.04561 * 4 3 2 28 28 H 1.09006 * 109.46762 * 149.69530 * 7 6 5 29 29 H 1.08996 * 109.47764 * 29.69725 * 7 6 5 30 30 H 1.00899 * 110.99771 * 298.89709 * 8 7 6 31 31 H 0.96999 * 119.99754 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.47309 * 177.96484 * 19 9 8 33 33 H 1.09001 * 109.47304 * 57.96379 * 19 9 8 34 34 H 1.09004 * 109.47083 * 174.45352 * 20 19 9 35 35 H 1.08998 * 109.47400 * 54.45175 * 20 19 9 36 36 H 1.08997 * 109.47358 * 294.45313 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8828 1.9608 0.8885 5 8 3.0729 3.2446 0.5257 6 6 2.3345 3.4735 -0.5685 7 6 2.2469 4.7825 -1.3100 8 7 1.1482 5.5858 -0.7572 9 6 1.1078 6.9182 -1.3745 10 1 1.4241 6.8463 -2.4151 11 6 -0.2978 7.4580 -1.3129 12 1 -1.0828 6.8699 -0.8608 13 6 -0.5819 8.7023 -1.8346 14 7 0.3739 9.4182 -2.3856 15 14 -2.3245 9.3711 -1.7589 16 1 -3.2069 8.3791 -1.0938 17 1 -2.3348 10.6389 -0.9858 18 1 -2.8167 9.6272 -3.1363 19 6 2.0489 7.8588 -0.6193 20 6 1.5753 7.9996 0.8287 21 7 1.7095 2.3767 -0.8891 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.3329 1.4593 1.7325 28 1 2.0601 4.5898 -2.3665 29 1 3.1853 5.3260 -1.2002 30 1 0.2642 5.1111 -0.8635 31 1 0.1739 10.2933 -2.7529 32 1 2.0465 8.8375 -1.0991 33 1 3.0593 7.4500 -0.6330 34 1 2.2987 8.5893 1.3919 35 1 1.4834 7.0111 1.2787 36 1 0.6065 8.4986 0.8473 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:15 Heat of formation + Delta-G solvation = -13.234454 kcal Electronic energy + Delta-G solvation = -16886.407670 eV Core-core repulsion = 14177.924001 eV Total energy + Delta-G solvation = -2708.483669 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.25170 -38.26071 -36.51486 -35.01133 -33.67750 -32.60544 -30.51575 -28.54869 -26.42223 -25.07107 -24.72646 -22.34270 -21.78342 -20.96683 -18.63538 -17.82653 -17.59360 -16.92516 -16.21089 -15.76547 -15.57777 -15.20875 -15.03722 -14.56851 -14.47575 -13.99237 -13.70683 -13.28247 -13.11991 -12.83095 -12.66888 -12.42532 -12.35575 -12.23272 -11.97933 -11.77345 -11.69251 -11.41528 -11.32949 -10.81723 -10.55394 -9.68913 -9.16843 -8.10349 -6.21690 0.51635 1.41466 1.44559 1.54763 1.67041 1.88663 2.43463 3.03512 3.19244 3.69604 3.83385 4.00071 4.27159 4.40631 4.44968 4.56440 4.62517 4.68410 4.79694 4.87552 4.94129 4.97496 5.06454 5.21778 5.28102 5.33083 5.36054 5.46957 5.54119 5.70616 5.79098 5.86477 6.25095 6.36986 6.65423 6.83306 6.95164 7.46411 8.95136 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031580 B = 0.005486 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.435495 B = 5102.748524 C = 5621.305746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.037 4.037 4 C -0.076 4.076 5 O -0.209 6.209 6 C 0.198 3.802 7 C 0.156 3.844 8 N -0.677 5.677 9 C 0.223 3.777 10 H -0.021 1.021 11 C -0.525 4.525 12 H 0.054 0.946 13 C 0.022 3.978 14 N -0.913 5.913 15 Si 0.953 3.047 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.100 4.100 20 C -0.108 4.108 21 N -0.503 5.503 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.256 0.744 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.335 0.665 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.036 0.964 35 H 0.049 0.951 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -15.314 6.072 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.157 4.157 4 C -0.146 4.146 5 O -0.094 6.094 6 C -0.009 4.009 7 C 0.026 3.974 8 N -0.309 5.309 9 C 0.115 3.885 10 H -0.004 1.004 11 C -0.563 4.563 12 H 0.072 0.928 13 C -0.178 4.178 14 N -0.552 5.552 15 Si 0.779 3.221 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.138 4.138 20 C -0.166 4.166 21 N -0.235 5.235 22 H 0.100 0.900 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.129 0.871 27 H 0.272 0.728 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.153 0.847 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.434 -14.937 6.028 16.706 hybrid contribution -0.759 0.575 -0.545 1.097 sum 3.675 -14.362 5.483 15.806 Atomic orbital electron populations 1.21652 0.94818 1.02436 1.01176 1.19998 0.96159 0.86720 1.04462 1.22416 1.00517 0.98814 0.93927 1.25644 1.03818 0.81313 1.03826 1.84470 1.55860 1.30212 1.38856 1.26235 0.91299 0.97035 0.86376 1.20181 0.98432 0.84915 0.93914 1.60604 1.06027 1.03954 1.60307 1.18979 0.95221 0.84127 0.90141 1.00388 1.21399 0.94242 1.02498 1.38176 0.92766 1.25551 1.00470 0.97019 0.94775 1.70003 1.33285 1.12283 1.39652 0.85576 0.80629 0.78248 0.77599 1.19467 1.20669 1.20771 1.21343 0.95513 1.00603 0.96365 1.21308 0.99094 1.00079 0.96091 1.70305 1.24172 1.00078 1.28953 0.90001 0.93536 0.94388 0.90028 0.87136 0.72842 0.91677 0.88396 0.84748 0.92894 0.91969 0.95457 0.94512 0.93231 0.94971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.88 71.98 0.71 -2.13 16 2 C -0.04 -0.66 6.50 29.85 0.19 -0.46 16 3 C -0.04 -0.99 6.37 41.26 0.26 -0.72 16 4 C -0.08 -1.81 12.06 66.93 0.81 -1.01 16 5 O -0.21 -6.65 10.78 -3.79 -0.04 -6.69 16 6 C 0.20 6.91 7.90 88.34 0.70 7.61 16 7 C 0.16 5.74 6.08 85.56 0.52 6.26 16 8 N -0.68 -28.86 5.50 -499.50 -2.75 -31.60 16 9 C 0.22 11.02 2.30 44.17 0.10 11.12 16 10 H -0.02 -1.16 7.84 -2.39 -0.02 -1.18 16 11 C -0.52 -28.12 7.34 25.60 0.19 -27.93 16 12 H 0.05 2.92 7.60 -2.91 -0.02 2.89 16 13 C 0.02 1.16 5.30 84.66 0.45 1.61 16 14 N -0.91 -51.33 11.34 21.45 0.24 -51.09 16 15 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 C -0.10 -4.75 5.58 30.59 0.17 -4.58 16 20 C -0.11 -4.80 9.46 71.98 0.68 -4.12 16 21 N -0.50 -17.27 11.28 -291.99 -3.29 -20.56 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.11 1.25 8.11 -2.39 -0.02 1.23 16 27 H 0.26 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.10 3.45 7.40 -2.39 -0.02 3.43 16 30 H 0.34 14.67 8.24 -89.69 -0.74 13.93 16 31 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.06 3.31 6.13 -2.39 -0.01 3.30 16 33 H 0.03 1.18 7.43 -2.39 -0.02 1.16 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 2.14 7.50 -2.39 -0.02 2.12 16 36 H 0.03 1.52 7.37 -2.39 -0.02 1.51 16 Total: -1.00 -62.31 301.35 1.30 -61.01 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.33 Total: 18.01 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.78 Total: -14.35 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -5.80 Total: -103.25 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.04 Total: -6.69 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -62.31 1.30 -61.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.778 kcal (2) G-P(sol) polarization free energy of solvation -62.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds