Wall clock time and date at job start Sun Mar 29 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47415 * 2 1 4 4 H 1.09002 * 109.47402 * 56.26784 * 3 2 1 5 5 C 1.50701 * 109.47147 * 176.26489 * 3 2 1 6 6 H 1.08001 * 120.00396 * 119.99904 * 5 3 2 7 7 C 1.37886 * 120.00156 * 299.99879 * 5 3 2 8 8 N 1.31504 * 120.00016 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99655 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47331 * 89.99671 * 9 7 5 11 11 H 1.48499 * 109.46786 * 210.00053 * 9 7 5 12 12 H 1.48505 * 109.47109 * 329.99612 * 9 7 5 13 13 N 1.46895 * 109.47037 * 296.26102 * 3 2 1 14 14 C 1.46907 * 110.99776 * 148.18469 * 13 3 2 15 15 C 1.47202 * 109.54039 * 54.59023 * 14 13 3 16 16 N 5.02347 * 113.32332 * 0.60883 * 2 1 3 17 17 C 1.53170 * 109.54647 * 294.41395 * 14 13 3 18 18 C 1.53101 * 109.15773 * 183.24312 * 17 14 13 19 19 O 1.42901 * 109.48962 * 57.47192 * 18 17 14 20 20 C 1.42901 * 114.09814 * 298.88790 * 19 18 17 21 21 C 1.53092 * 109.41118 * 61.15852 * 20 19 18 22 22 H 1.08999 * 109.46855 * 295.31924 * 1 2 3 23 23 H 1.09004 * 109.46457 * 55.31123 * 1 2 3 24 24 H 1.08994 * 109.47587 * 175.31387 * 1 2 3 25 25 H 1.09000 * 109.46746 * 120.00257 * 2 1 3 26 26 H 1.09003 * 109.47157 * 239.99661 * 2 1 3 27 27 H 0.97008 * 119.99732 * 180.02562 * 8 7 5 28 28 H 1.00902 * 111.00305 * 272.13691 * 13 3 2 29 29 H 1.09000 * 109.52118 * 303.05795 * 17 14 13 30 30 H 1.08998 * 109.52325 * 63.24432 * 17 14 13 31 31 H 1.09002 * 109.40668 * 297.48813 * 18 17 14 32 32 H 1.09007 * 109.49153 * 177.50697 * 18 17 14 33 33 H 1.08994 * 109.48248 * 301.17756 * 20 19 18 34 34 H 1.08996 * 109.49065 * 181.14170 * 20 19 18 35 35 H 1.09006 * 109.51992 * 182.48579 * 21 20 19 36 36 H 1.08997 * 109.57876 * 62.32866 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6232 1.9753 0.8546 5 6 3.5442 1.4434 0.0926 6 1 4.1333 1.8936 -0.6927 7 6 4.1684 0.8694 1.1798 8 7 5.4810 0.8697 1.2603 9 14 3.1495 0.0899 2.5377 10 1 2.9221 -1.3438 2.2251 11 1 3.8738 0.2063 3.8288 12 1 1.8426 0.7879 2.6386 13 7 1.6255 2.1083 -1.2420 14 6 1.3941 3.5418 -1.0188 15 6 2.5933 4.1462 -0.4161 16 7 3.5189 4.6127 0.0490 17 6 0.1991 3.7276 -0.0788 18 6 -0.0848 5.2233 0.0833 19 8 -0.3270 5.8044 -1.1995 20 6 0.7749 5.7027 -2.1036 21 6 1.0919 4.2263 -2.3554 22 1 -0.3633 0.4395 0.9289 23 1 -0.3632 0.5849 -0.8451 24 1 -0.3634 -1.0241 -0.0840 25 1 1.8932 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 5.9201 0.4656 2.0251 28 1 2.3034 1.9614 -1.9748 29 1 -0.6769 3.2357 -0.5016 30 1 0.4291 3.2916 0.8934 31 1 0.7759 5.7074 0.5450 32 1 -0.9617 5.3606 0.7161 33 1 1.6468 6.1929 -1.6707 34 1 0.5174 6.1851 -3.0465 35 1 1.9599 4.1466 -3.0099 36 1 0.2352 3.7439 -2.8261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:10 Heat of formation + Delta-G solvation = -16.630512 kcal Electronic energy + Delta-G solvation = -18088.775534 eV Core-core repulsion = 15380.144601 eV Total energy + Delta-G solvation = -2708.630933 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87895 -36.99589 -35.10600 -33.52742 -31.96103 -31.11197 -30.08168 -26.93092 -24.09914 -23.73004 -22.42900 -21.38297 -19.89042 -17.31456 -16.62668 -16.10443 -15.91730 -15.22994 -14.87571 -14.32749 -13.93693 -13.44741 -13.23126 -12.93484 -12.53139 -12.38970 -12.14712 -11.93455 -11.88507 -11.66816 -11.49756 -11.17981 -11.05966 -10.79282 -10.54214 -10.32686 -10.24946 -9.81451 -9.61178 -9.51022 -9.21983 -8.63112 -7.87715 -6.16704 -4.18637 3.20105 3.29572 3.32705 3.50094 3.59850 3.91363 4.30876 4.38241 4.69372 4.90354 5.00076 5.05817 5.18407 5.32830 5.51198 5.66916 5.68694 5.72837 5.91530 5.94851 5.99575 6.10094 6.18505 6.22755 6.31412 6.55970 6.65204 6.85619 6.95914 7.14705 7.21549 7.40997 7.71788 8.07771 8.35414 8.36587 8.83563 9.44649 10.96145 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.009433 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.918052 B = 2967.554617 C = 3353.744180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.176 3.824 4 H 0.036 0.964 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.298 1.298 12 H -0.265 1.265 13 N -0.653 5.653 14 C 0.219 3.781 15 C 0.180 3.820 16 N -0.418 5.418 17 C -0.139 4.139 18 C 0.058 3.942 19 O -0.381 6.381 20 C 0.060 3.940 21 C -0.141 4.141 22 H 0.038 0.962 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.264 0.736 28 H 0.345 0.655 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.894 4.767 -5.278 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C 0.068 3.932 4 H 0.054 0.946 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.282 5.282 14 C 0.124 3.876 15 C -0.141 4.141 16 N -0.093 5.093 17 C -0.178 4.178 18 C -0.019 4.019 19 O -0.299 6.299 20 C -0.018 4.018 21 C -0.180 4.180 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.164 5.306 -4.451 13.998 hybrid contribution 0.758 -0.751 0.930 1.415 sum -11.407 4.556 -3.521 12.778 Atomic orbital electron populations 1.21770 0.97405 0.99806 1.01335 1.21798 0.93939 0.98828 1.00662 1.19733 0.94806 0.90958 0.87722 0.94600 1.21559 0.89711 1.39220 1.07953 0.90960 1.24955 0.94692 0.95214 0.97749 1.69906 1.08202 1.44175 1.30391 0.86875 0.80370 0.79966 0.81165 1.20292 1.22573 1.19038 1.61126 1.51356 1.04834 1.10927 1.18542 0.86279 0.89079 0.93744 1.30152 0.95559 0.93728 0.94624 1.81055 1.10336 1.10367 1.07585 1.22315 0.97742 0.97013 1.00680 1.22658 1.01649 0.92388 0.85214 1.87893 1.38860 1.79283 1.23884 1.22603 0.89833 0.95359 0.93969 1.22277 1.03774 0.96155 0.95783 0.94305 0.91526 0.94655 0.93669 0.92105 0.92599 0.83575 0.88602 0.89806 0.93399 0.88343 0.93384 0.88364 0.90277 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.85 37.16 0.37 -2.04 16 2 C -0.11 -2.32 5.12 -26.73 -0.14 -2.45 16 3 C 0.18 3.80 1.03 -68.87 -0.07 3.73 16 4 H 0.04 0.82 4.77 -51.93 -0.25 0.57 16 5 C -0.55 -14.56 7.59 -34.44 -0.26 -14.82 16 6 H 0.07 2.14 7.69 -52.49 -0.40 1.74 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -27.31 13.96 55.43 0.77 -26.54 16 9 Si 0.89 21.81 24.40 -169.99 -4.15 17.66 16 10 H -0.28 -6.58 6.84 56.52 0.39 -6.19 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 13 N -0.65 -11.50 5.25 -96.90 -0.51 -12.01 16 14 C 0.22 3.51 0.67 -134.20 -0.09 3.42 16 15 C 0.18 3.61 9.38 -20.76 -0.19 3.42 16 16 N -0.42 -9.71 18.51 42.16 0.78 -8.93 16 17 C -0.14 -1.99 4.81 -26.59 -0.13 -2.12 16 18 C 0.06 0.76 6.61 37.21 0.25 1.00 16 19 O -0.38 -5.04 10.77 -35.23 -0.38 -5.42 16 20 C 0.06 0.72 6.61 37.21 0.25 0.96 16 21 C -0.14 -1.76 5.10 -26.59 -0.14 -1.90 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.02 7.58 -51.93 -0.39 0.62 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 1.00 3.22 -51.93 -0.17 0.83 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 28 H 0.35 6.19 8.18 -39.29 -0.32 5.87 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.33 6.36 -51.93 -0.33 1.00 16 31 H 0.05 0.69 7.39 -51.93 -0.38 0.30 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.64 7.38 -51.93 -0.38 0.25 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 281.62 15.07 4.24 4.24 Total: -1.00 -31.31 281.62 -4.69 -36.00 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.20 Total: 3.67 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.26 Total: -8.68 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 1.04 Total: -47.47 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.38 Total: -5.42 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.15 Total: 17.66 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.31 -4.69 -36.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.373 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds